Abstract
The complete mitochondrial genome of the leafhopper Empoascanara sipra Dworakowska, 1980 was sequenced and annotated from this study. The circular molecule is 14,827 bp in length, including 13 protein-coding genes (PCGs), 22 tRNA genes, two rRNA genes, and one AT-rich region. The base composition of the genome is as follows: A (42.6%), T (33.9%), G (10.0%), and C (13.4%). 11 PCGs have ATN as the start codon, except for atp8 and nad5 genes have TTG. The conventional termination codons (TAA or TAG) occur in 11 PCGs, whereas cox2 and nad2 use incomplete codon (T––) as termination codon. Phylogenetic analysis using 13 PCGs showed that E. sipra was clustered with two Typhlocybinae species, which was consistent with the conventional classification.
Currently, Typhlocybinae comprises almost 5000 described species worldwide, making it the second largest leafhopper subfamily, after deltocephalinae (Dietrich and Dmitriev Citation2006). The typhlocybine leafhopper species Empoascanara sipra belongs to the tribe Erythroneurini with Empoascanara prima Distant, 1918 as its type species (Dworakowska Citation1980; Song and Li Citation2013). Many leafhopper species in this subfamily are harmful to woody and herbaceous plants through sucking, ovipositing, and virus transmission (Mckamey Citation2002; Du et al. Citation2017). In this study, all examined samples were collected from Fanjing Mountain in Guizhou Province of China (N27°52′, E108°47′). The whole body specimen was preserved in ethanol and stored in the insect specimen room of Guizhou Normal University with an accession number GZNU-ELS-2019002.
The circular mitochondrial genome of E. sipra is 14,827 bp in size. This mitochondrial genome was submitted to GenBank database under accession Number. MN604278. The circular mitogenome contains 13 protein-coding genes (PCGs), 22 transfer RNA genes (tRNAs), two ribosomal RNA genes (rrnL and rrnS), and one AT-rich region. The gene order and orientation of E. sipra were identical with other Hemiptera species (Mao et al. Citation2017). The base composition values for E. sipra mitogenome were 42.6, 13.4, 10.0, and 33.9% for A, C, G, and T, respectively, with an overall A + T content of 76.5%. The AT-skew and GC-skew of this mitogenome were 0.113 and −0.146. Twenty-four genes were oriented on the majority strand (N-strand), whereas the others were transcribed onthe minority strand (J-strand). The E. sipra mitogenome has a total of 66 bp intergenic spacer sequences, which is made up of 10 regions in the range from 1 to 26 bp. The largest intergenic spacer sequence of 26 bp is located between nad5 and trnH. Gene overlaps were found at eleven gene junctions and involved a total of 40 bp, the longest 10 bp overlapping located between trnS2 and nad1.
Eleven PCGs have ATN as the start codon, except for atp8 and nad5 genes have TTG. The conventional termination codons (TAA or TAG) occur in 11 PCGs, whereas cox2 and nad2 use incomplete codon (T––) as termination codon. The shortest PCG is atp8 gene (153 bp) and the longest one is nad5 gene (1645 bp). The mitogenome harbors the complete set of 22 tRNA genes, ranging from 62 bp (trnC and trnG) to 71 bp (trnK). The rrnL gene is located between trnL1 and trnV, with length of 1187 bp and A + T content of 81.63%. The rrnS gene is located between trnV and control region, with a length of 725 bp and A + T content of 80.41%. The control region is located between rrnS and trnI genes, which is 527 bp in length with an A + T content of 82.92%.
Phylogenetic relationship was constructed on nucleotides sequences of 13 PCGs among E. sipra and 13 reference species from four different subfamilies in family Cicadellidae. The result showed that E. sipra was clustered with two typhlocybine species (), which was consistent with the conventional classification.
Figure 1. Phylogenetic tree showing the relationship between E. sipra and 13 other leafhoppers in inner group based on neighbour-joining method. Ascalohybris subjacens was used as an outgroup. GenBank accession numbers of each species were listed in the tree.
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The authors report no conflicts of interests. The authors alone are responsible for the content and writing of the paper.
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References
- Dietrich CH, Dmitriev DA. 2006. Review of the New World genera of the leafhopper tribe Erythroneurini (Hemiptera: Cicadellidae: Typhlocycbinae). Illinois Nat Hist Sur-Vey Bull. 37(5):119–190.
- Du YM, Dai W, Dietrich CH. 2017. Mitochondrial genomic variation and phylogenetic relationships of three groups in the genus Scaphoideus (Hemiptera: Cicadellidae: Deltocephalinae). Sci Rep. 7(1):1–10.
- Dworakowska I. 1980. On some species of the genus Empoascanara Dist. (Homoptera, Auchenorrhyncha, Cicadellidae, Typhlocybinae). Reichenbachia. 18(26):173–188.
- Mao M, Yang XS, Bennett G. 2017. The complete mitochondrial genome of Macrosteles quadrilineatus (Hemiptera: Cicadellidae). Mitochondrial DNA B. 2(1):173–175.
- Mckamey SH. 2002. The distribution of leafhopper pests in relation to other leafhoppers (Hemiptera; Cicadellidae). Denisia. 176:357–378.
- Song Y. H, Li Z. Z. 2013. Two new species of Empoascanara Distant (Hemiptera: Cicadellidae: Typhlocybinae) from Yunnan Province, China. Zootaxa. 3637(1):89–093.