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Mitochondrial DNA Part A
DNA Mapping, Sequencing, and Analysis
Volume 27, 2016 - Issue 6
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Mitogenome Announcement

The complete chloroplast genome of Lilium distichum Nakai (Liliaceae)

Yoon-Jung HwangDepartment of Life Science, Sahmyook University, Seoul, Republic of Korea;
,
Sang-Choon LeeDepartment of Plant Science, Plant Genomics and Breeding Institute, and Research Institute of Agriculture and Life Sciences, College of Agriculture and Life Sciences, Seoul National University, Seoul, Republic of Korea;
,
Kyunghee KimDepartment of Plant Science, Plant Genomics and Breeding Institute, and Research Institute of Agriculture and Life Sciences, College of Agriculture and Life Sciences, Seoul National University, Seoul, Republic of Korea; ;Phyzen Genomics Institute, Seoul, Republic of Korea;
,
Beom-Soon ChoiPhyzen Genomics Institute, Seoul, Republic of Korea;
,
Jee Young ParkDepartment of Plant Science, Plant Genomics and Breeding Institute, and Research Institute of Agriculture and Life Sciences, College of Agriculture and Life Sciences, Seoul National University, Seoul, Republic of Korea;
,
Tae-Jin YangDepartment of Plant Science, Plant Genomics and Breeding Institute, and Research Institute of Agriculture and Life Sciences, College of Agriculture and Life Sciences, Seoul National University, Seoul, Republic of Korea; Correspondence[email protected]
&
Ki-Byung LimDepartment of Horticultural Science, Kyungpook National University, Daegu, Republic of KoreaCorrespondence[email protected]
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Pages 4633-4634 | Received 25 Sep 2015, Accepted 26 Sep 2015, Published online: 09 Feb 2016
 
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Abstract

Lilium distichum is a native lily species in Korea, northeastern China and far eastern Russia. The complete chloroplast genome sequence of L. distichum was generated by de novo assembly using whole genome next generation sequences. The chloroplast genome of L. distichum was 152 598 bp in length and divided into four distinct regions, such as large single copy region (82 031 bp), small single copy region (17 487 bp) and a pair of inverted repeat regions (26 540 bp). The genome annotation predicted a total of 112 genes, including 78 protein-coding genes, 30 tRNA genes,and 4 rRNA genes. Phylogenetic analysis with the reported chloroplast genomes revealed that L. distichum is most closely related to L. superbum (Turk’s-cap lily).

Disclosure statement

This work was carried out with the supports of “Cooperative Research Program for Agriculture Science & Technology Development (Project no. PJ01109702)”, Regional Subgenebank Support Program of Rural Development Administration, Republic of Korea and the Bio & Medical Technology Development Program of the NRF funded by the Korean government, MSIP (NRF-2015M3A9A5030733).

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