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Review

The more, the merrier

Cytokinin signaling beyond Arabidopsis

Pages 1384-1390 | Received 26 Jul 2010, Accepted 27 Jul 2010, Published online: 01 Nov 2010

Abstract

The phytohormone cytokinin is a key player in many developmental processes and in the response of plants to biotic and abiotic stress. The cytokinin signal is perceived and transduced via a multistep variant of the bacterial two-component signaling system. Most of the research on cytokinin signaling has been done in the model plant Arabidopsis thaliana. Research on cytokinin signaling has expanded to a much broader range of plants species in recent years. This is due to the natural limitation of Arabidopsis as a model species for the investigation of processes like nodulation or wood formation. The rapidly increasing number of sequenced plant genomes also facilitates the use of other species in this line of research. This review summarizes what is known about the cytokinin signaling in the different organisms and highlights differences to Arabidopsis.

Phytohormones are well known regulators of plant development.Citation1 In addition, they also play an important role in mediating the response of plants to biotic and abiotic factors in the environment. Cytokinins, N6-substituted adenine derivates, are one class of phytohormones.Citation2 The cytokinin signal is perceived and transduced via a multi-step variant of the two-component system (TCS). While the TCS is the principal signaling system in bacteria, among higher eukaryotes it is found only in plants.Citation3

The current model of cytokinin signaling predicts that cytokinin is perceived by a membrane bound hybrid histidine kinase receptor (HK). The binding of the ligand leads to an autophosphorylation of the receptor and is followed by an intramolecular transfer of the phosphoryl residue to the receiver domain of the receptor. Subsequently, the phosphate is transferred to a histidine phosphotransfer protein (HPt), which translocates to the nucleus where it activates type-B response regulators (type-B RRs). This class of response regulators are Myb-type transcription factors and among their target genes are the type-A response regulators (type-A RRs). The type-A RRs act as negative feedback regulators of the cytokinin signaling pathway.Citation4

Recently, phylogenetic analysis aimed at unraveling the origin of this signaling pathway identified the moss Physcomitrella patens as the most early diverging organism examined to encode members of all four protein families in its genome. While the analysis of the also investigated algal species revealed the presence of genes for HPts and type-B RRs, no sequences encoding for putative cytokinin receptors or type-A RRs were detected.Citation5

Most of the research on cytokinin signaling to date has been carried out in the model plant Arabidopsis thaliana. However, studies in other plants have not only contributed to the elucidation of this pathway but also highlighted the cross-talk between cytokinin signaling and other non-hormone signaling pathways, i.e., signaling pathways regulating nitrogen and sulfur metabolism,Citation6Citation9 nodulation,Citation10Citation14 pathogen defense,Citation15 heavy metal responseCitation16 and drought stress.Citation17,Citation18

The function of cytokinin signaling genes are investigated in two types of experiments. Single genes of the cytokinin signaling pathway were identified in screens connecting cytokinin signaling to the respective stimuli. Systematic approaches characterizing all family members of the cytokinin signaling pathway in a given species were conducted in species with completely sequenced genomes. Examples for such methodical experiments can be found in rice, poplar, lotus and grape.Citation7,Citation19Citation24 With the rapidly increasing number of completely sequenced plant genomes and the new possibilities offered by the arrival of the next generation sequencing techniques for transcriptome analysis, the opportunity for a larger number of targeted analysis in plant species other than Arabidopsis thaliana is growing dramatically. This is not only welcome, but also necessary as the influence or crosstalk of cytokinin in many biological processes, such as nodulation, wood formation and pathogen response to species not affecting Arabidopsis cannot at all or can only rudimentarily be investigated in Arabidopsis. Thus cytokinin research is bound to profit greatly from a broadening in focus to include diverse plant species.

The aim of this review is to summarize the current state of knowledge about cytokinin signaling in different plant species beyond Arabidopsis thaliana (for a comprehensive overview see Sup. Table 1). In the following sections we will review what is known for members of each of the four protein families involved in the cytokinin signaling pathway. For a detailed description of cytokinin signaling in Arabidopsis see recent reviews.Citation25Citation27

Cytokinin Receptors

One of the processes where cytokinin plays a crucial role but cannot be investigated in Arabidopsis is root nodule formation. Three publications describe the role of a cytokinin receptor from lotus, Lotus Histidine Kinase 1 (LHK1), in this symbiotic process.Citation10,Citation12,Citation14 Receptor loss-of-function mutants failed to respond to the rhizobial signal and did not perform the first step of nodule formation—the division of cortical cells.Citation12 In contrast, a constitutively active mutant displayed spontaneous development of nodules even in the absence of the symbiotic rhizobial bacteria or their signaling molecules.Citation14 This spontaneous nodulation can be suppressed by addition of abscisic acid (ABA).Citation10 Expression analysis detected receptor transcripts in uninfected root tissues as well as in nodules. Heterologous complementation of bacterial and yeast mutants further confirmed LHK1 function as a cytokinin receptor.Citation12,Citation14 Medicago truncatula is also a root nodule forming species containing three cytokinin receptors. An RNAi approach indicated that at least one of the putative cytokinin receptors also acts in nodule formation.Citation11 Experimental data showing expression of the histidine kinase genes in newly formed nodules supported this assessment.Citation28,Citation29 Further expression analysis indicated that at least two of the cytokinin receptors in Medicago might play a role in abiotic stress response as well.Citation30

Another aspect of plant biology where Arabidopsis cannot serve as a model is wood formation and the influence that cytokinin has on this developmental process. With the completed genomic sequence at hand, poplar is often used as a model organism for tree biology. As cambium is the tissue which gives rise to wood and cytokinin plays a decisive role in cambium development,Citation31 putative cytokinin receptors of poplar have been investigated in this context.Citation32 For four of the five putative cytokinin receptors of poplar, expression was detected in the cambium. The same group investigated the expression pattern of a putative cytokinin receptor from birch and found expression in the cambial zone as well. Several experiments including analysis of grafts, callus formation and stem diameter using cytokinin deficient transgenic poplar plants clearly demonstrated the role of cytokinin as a major regulator of cambium development.Citation32

Other functional studies of cytokinin receptors have been focused on their core role in cytokinin signaling itself. In 2004, Yonekura-Sakakibara and colleagues investigated the expression patterns of three cytokinin receptors of corn in various tissues and while they found large overlaps in the temporal and spatial expression patterns of the three receptors, they also detected tissue specificity of the receptor transcripts.Citation33,Citation34 The cytokinin binding of the maize receptors revealed specificities similar to those detected in the respective homologs in Arabidopsis.Citation35,Citation36 Data describing putative cytokinin receptors in other plant species are limited to transcriptome analysis. Experiments in rice detected transcripts of putative cytokinin receptors in all tissues investigated.Citation19,Citation21,Citation37 At least in one case the transcription level of the receptors increased in response to salt stress and dehydration, indicating a role for cytokinin in response to abiotic stress.Citation17,Citation18 Northern blot analysis in Catharanthus roseus showed a strong expression of a putative cytokinin receptor into several organs, but mainly in the flower.Citation38 Expression of homologs of the Arabidopsis cytokinin receptors were also detected in lupine,Citation39 tomato,Citation40 potatoCitation15 and in grape.Citation7 The main features of the cytokinin receptors across the different species have been compiled in .

Histidine Phosphotransfer Proteins

For most HPt proteins the focus of research has been on their role within the cytokinin signaling pathway. Several lines of evidence suggest a conserved role of HPts in maize and Arabidopsis. Transiently expressed ZmHP1-GFP localized to both the cytosol and the nucleus, as one would predict from the current model for cytokinin signaling.Citation41 Phosphorelay and yeast two-hybrid experiments showed that at least ZmHP1, ZmHP2 and ZmHP3 are interacting with ZmRRs of both type-A and type-B families and that this interaction mediates a phosphotransfer.Citation41 In addition, the maize ZmHP2 is the only full-length protein of the cytokinin signaling pathway in any species for which the three dimensional structure has been solved. This structure revealed that all the amino acids, which are conserved in plant HPts, surround the canonical histidine residue—probably forming a docking interface for the receiver domain of the receptors and response regulators.Citation42 For ZmHP1, crystals and preliminary X-ray spectra were also reported, but thus far no crystal structure has been published.Citation43

Functional analysis of HPts was also carried out in Catharanthus roseus. In cell-lines transformed with a CrHP1 RNAi construct induction of the type-A RR CrRR1 transcript was reduced, while the expression of the type-B RR CrRR5 remained unchanged by cytokinin treatment.Citation13 The expression of CrHP1 itself in wild-type cell culture lines was not responsive to cytokinin. However, the addition of jasmonic acid or auxin led to an increase in CrHP1 expression, indicating a regulatory crosstalk between the signaling pathways of these phytohormones.Citation13

In Medicago one of the HPts, MtHP2, was found to be upregulated upon salt stress, further corroborating the link between cytokinin and abiotic stress signaling detected in Arabidopsis.Citation44,Citation45 Transcripts of the HPt genes were detected in additional species, namely in orange,Citation46 rice,Citation18,Citation19,Citation21,Citation37 poplar,Citation47 wheatCitation48 and in grape.Citation7 The main features of the histidine phosphotransfer proteins across the different species have been compiled in .

Type-B Response Regulators

In Medicago truncatula not only the cytokinin receptors were indicated in the nodule formation as described above, but also one of the three type-B RRs, MtRR1. This type-B RR was strongly induced in the earlier stages of nodule formation. However, MtRR1 RNAi plants did not display an altered nodulation phenotype and further research is needed to clarify the role of MtRR1 in this process.Citation11

One of the poplar type-B RRs, PtRR13, was identified in a microarray experiment to be involved in adventitious root development. This finding was later confirmed by the phenotypes displayed by PtRR13 RNAi and transgenic dominant negative (ΔDDKPtRR13) plants, which showed defects in this process.Citation24 Analysis of the expression patterns of all type-B RRs from poplar showed for at least three of the eleven type-B RRs a clear induction of gene expression after cytokinin treatment.Citation23 This is surprising as according to the current model of cytokinin signaling, the type-A RRs are the only component of the pathway being transcriptionally regulated by cytokinin treatment and numerous microarray experiments from Arabidopsis confirmed this hypothesis.Citation26,Citation49,Citation50

In maize, Asakura and colleagues showed that the three analyzed type-B RRs, ZmRR8, ZmRR9 and ZmRR10 can interact with the three ZmHPs in a yeast two-hybrid assay. These interactions were also verified in phosphorelay experiments for ZmRR8 and ZmRR9.Citation41 Subcellular localization showed ZmRR8 to be located in the nucleus. The expression of all three type-B ZmRRs was not affected by cytokinin treatment.Citation41

Taking advantage of the complete genome sequence, two groups analyzed the expression patterns of various TCS components in rice and could show differential expression patterns for the type-B OsRRs in various tissues, developmental stages and in response to abiotic stresses.Citation17,Citation19 The main features of the type-B RRs across the different species have been compiled in .

Type-A Response Regulators

Research on type-A RRs in maize points to roles in phyllotaxis and seed development. Aberrant phyllotaxy1 (abphyl1; also Zmrr3) was shown to be a regulator of embryo morphogenesis and shoot phyllotaxis.Citation51 The ABPHYL1 expression was localized to the embryo and shoot apex.Citation52 Detailed analysis of the mutant concluded that the phenotype was caused by reduced auxin levels leading to a larger shoot apical meristem, a delayed leaf initiation and altered leaf phyllotaxy.Citation53 The type-A RRs ZmTcRR1 and ZmTcRR2 were reported to be specifically expressed in the transfer cell layer of developing maize kernels; however, so far no specific function was assigned to these genes.Citation33,Citation54 Other members of type-A RRs of maize were characterized for their role in cytokinin signaling. On the protein level, type-A RRs were shown to interact with ZmHPs in yeast two-hybrid and phosphorelay experiments. These in vitro experiments showed also that type-A ZmRRs auto-dephoshorylated much faster than type-B ZmRRs,Citation41 which might be an important trait for their function as negative regulators of the cytokinin signaling pathway. Three type-A RRs, ZmRR1, ZmRR2 and ZmRR3, were shown to localize to the cytosol and the nucleus, while ZmRR4, ZmRR5 and ZmRR6 were found exclusively in the nucleus of transiently transformed onion epidermis cells.Citation41 The transcription of all type-A ZmRRs expressed in the leaf blade was shown to be strongly induced by cytokinin.Citation6,Citation41,Citation55 ZmRR1 and ZmRR2 were found to be involved in the nitrogen signal transduction,Citation8,Citation9,Citation56,Citation57 a node of crosstalk which has also been discovered in Arabidopsis.Citation58

Experimental characterization of the type-A RRs of rice further emphasized the role of this protein family in plant development. Calli overexpressing OsRR6 were severely retarded in shoot regeneration and transgenic plants displayed a general dwarf phenotype with a poorly developed root system—consistent with a role of OsRR6 as a negative regulator of cytokinin signaling.Citation59 Rice plants overexpressing either OsRR3 or OsRR5 exhibited a lower cytokinin sensitivity in root elongation and callus growth assays. Furthermore, in these transgenic plants other type-A RRs such as OsRR1, OsRR7, OsRR14 and OsRR15 were downregulated, while other members of the same gene family showed a higher level of transcription than in the wild type control.Citation60 Also type-A RRs from other species were implicated in plant development. A recent study hints at a role for type-A RR, PipiRR1, during caulogenic induction in Pinus pinea. The respective transcript was detected in the cotyledons and increased after treatment with cytokinin in a dose-dependent manner.Citation61

Type-A RRs of other species were shown to react to abiotic stimuli. The transcript level of PvRR1 of Phaseolus vulgaris increased during starvation experiments related to macronutrients such as phosphorus, potassium and nitrogen as well as upon addition of cytokinin, while it decreased after resupply of the nutrients.Citation62 Two type-A RRs of Medicago, MtRR4 and MtRR5, were upregulated in response to salt stress, but also during nodulation.Citation30 In contrast, the three type-A RRs of Catharanthus roseus seemed to be specifically induced by cytokinin.Citation13,Citation63,Citation64

Systematic expression studies for all type-A RRs of a given species have been done in rice, lotus and poplar. The extensive analysis of the complete set of type-A RRs in rice revealed different temporal and spatial expression patterns of this class of OsRRs. The transcript level of most type-A OsRRs increased upon cytokinin treatment.Citation19,Citation21,Citation22 Under different abiotic stress treatments, the expression of the type-A OsRRs was specifically and differentially up or downregulated.Citation17 In Lotus japonicus, the expression of six of the seven tested type-A RRs was induced by cytokinin. For the seventh gene no transcript could be detected and the authors suspected it to be a non-functional gene as parts of the C-terminus are missing.Citation20 In a similar experiment, investigating the members of this gene family in poplar, seven of the eleven type-A PtRRs were found to be induced by cytokinin.Citation23 For PtRR7, a strong expression was found in the cambium. In plants with a lower cytokinin status due to the ectopic expression of AtCKX2, the expression level of PtRR7 was clearly reduced.Citation32 The main features of the type-A RRs across the different species have been compiled in .

Conclusions

In this review we summarized the state of the art in the field of cytokinin signaling beyond Arabidopsis. Some of the signaling components were identified in genetic screens while others were analyzed in systematic approaches following the sequencing of the respective genomes. Many studies link cytokinin to development, crosstalk with other hormones and also to other processes such as abiotic stress or nutrients deficiency response—just as has been shown for Arabidopsis. However, new aspects of cytokinin action that cannot be investigated in Arabidopsis were also discovered, clearly highlighting the necessity to look beyond a single model plant to understand the full spectra of cytokinin-regulated processes. Thus the benefits of cytokinin research in different plant species include: (i) examination of proteins or even whole protein families of the cytokinin signaling pathway that might behave differently than those in Arabidopsis—e.g., cytokinin inducible HPts and type-B RRs; (ii) indentifying the role of cytokinin in other pathways, morphological structures and developmental processes not present in Arabidopsis and (iii) using the wealth of information on the different signaling components to understand the evolution and the evolutionary trajectories of the cytokinin signaling pathway.

Currently experimental data concerning cytokinin signaling derive almost exclusively from angiosperm species (). A deeper insight into the evolution of this pathway requires the inclusion of more early-diverging plant species into this analysis. The rapidly increasing number of sequenced genomes combined with the already established tools of cytokinin research will enhance our understanding of this fascinating plant hormone. The future of cytokinin research is very bright, indeed.

Abbreviations

TCS=

two-component system

HK=

histidine kinase

HPt=

histidine phosphotransfer protein

RR=

response regulator

Figures and Tables

Figure 1 Phylogenetic relation of plant species used in cytokinin signaling research. Species written in grey were used in bioinformatic analysis.Citation5 Black font marks species in which experimental data for cytokinin signaling components have been obtained on the RNA level. In species shaded in grey functional assays have been performed for members of the cytokinin signaling pathway (tree based on Sitte et al. 2002).Citation65

Figure 1 Phylogenetic relation of plant species used in cytokinin signaling research. Species written in grey were used in bioinformatic analysis.Citation5 Black font marks species in which experimental data for cytokinin signaling components have been obtained on the RNA level. In species shaded in grey functional assays have been performed for members of the cytokinin signaling pathway (tree based on Sitte et al. 2002).Citation65

Table 1 Compilation of the function associated with cytokinin receptors from different species

Table 2 Compilation of the function associated with phosphotransfer proteins from different species

Table 3 Compilation of the function associated with type-B response regtulators from different species

Table 4 Compilation of the function associated with type-A response regulators from different species

Supplemental material

Additional material

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Acknowledgements

This work was supported by a Elsa Neumann stipend to E.H., by a stipend from the Volkswagen Foundation to N.G. and support of the Dahlem Centre of Plant Science to A.H.. We are also very grateful to Anahid E. Powell for critically reading the manuscript.

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