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Review

Lifetime risk estimators in epidemiological studies of Krabbe Disease

Review and Monte Carlo comparison

, &
Article: e25212 | Received 03 Mar 2013, Accepted 29 May 2013, Published online: 30 May 2013

Abstract

This review addresses difficulties arising in estimating epidemiological parameters of leukodystrophies and lysosomal storage disorders, with special focus on Krabbe disease. Although multiple epidemiological studies of Krabbe disease have been published, these studies are difficult to reconcile since they have used different study populations and varying methods of calculation. Confusion exists regarding which epidemiological parameters have been estimated; the current review shows that most previous estimates can be properly interpreted as lifetime risk at birth. One of the most common estimation methods is shown to be inaccurate, while two other methods are shown to be approximately accurate. Based on the results of the current paper, recommendations are made that are expected to improve the quality of future studies of Krabbe disease. It is anticipated that these recommendations will be applicable to epidemiological studies of other lysosomal storage disorders, as well as any other rare diseases diagnosed with enzymatic screening.

Introduction

Krabbe disease (OMIM # 245200) arises as a result of deficient galactosylceramidase (GALC; E.C. 3.2.1.46) activity, which is caused by a mutated GALC gene. GALC is a degradative lysosomal enzyme, and thus Krabbe disease is classified as a lysosomal storage disorderCitation1,Citation2 in addition to its classification as a leukodystrophy. Since the GALC gene was cloned,Citation3 about 100 mutations to the GALC gene have been identified.Citation4 Some mutations are associated with well-specified phenotypes. For example, individuals homozygous for the 30-kb deletion (OMIM # 606890.0002) generally develop the early infantile form of the disease. Other mutations, however, lead to substantial phenotypic variability, both intrafamiliar and otherwise.Citation5

Krabbe disease is relatively difficult to diagnose due to its rarity and phenotypic heterogeneity. Primary care physicians may never see a case in their career. The proportion of Krabbe patients that never receive a correct diagnosis is unknown. Diagnostic accuracy is likely to vary drastically based on a family’s access to adequate medical care and physician experience. In an international survey of 334 families self-reported to have a member suffering from Krabbe disease, 103 reported the length of time between initial symptom onset and correct diagnosis. Mean time to diagnosis was 5.3 mo,Citation6 suggesting a substantial difficulty in the diagnosis of Krabbe disease. It has been suggested that individuals with adolescent and adult forms are particularly susceptible to misdiagnosis due to reduced awareness of later-onset subtypes.Citation6,Citation7 While symptom onset during infancy is generally associated with a more predictable and fulminant clinical course, the course of patients with later onset is quite variable,Citation6,Citation8,Citation9 and this variability is likely to contribute to diagnostic challenges facing practitioners.

Enzymatic screening and mutation analysis have improved antemortem diagnostic capabilities, offering good sensitivity in individuals with putative symptoms of Krabbe disease. As might be expected, challenges arise when these methods are applied to a large population of asymptomatic individuals. In 2006, New York State began screening all newborns for Krabbe disease, and by 2008 roughly 550,000 newborns had been screened. Four newborns were placed in the high-risk category based on GALC activity below 0.15 nmol/h/mg; two of these newborns received a positive diagnosis based on subsequent mutation analysis and abnormal neurodiagnostic studies. The other two had negative neurodiagnostic studies and remained asymptomatic at follow-up at 8 and 16 mo of age. Six were placed in the moderate-risk category (GALC between 0.16–0.29 nmol/h/mg protein) and 15 were placed in the low-risk category (0.3–0.5 nmol/h/mg protein). All moderate- and low-risk children were asymptomatic at follow-up.Citation5 Presently, only subsequent follow-up will be able to determine whether these asymptomatic at-risk children will develop symptoms at a later date, whether they are carriers of the disease or whether they simply harbor non-pathogenic GALC-lowering polymorphisms.Citation9

Epidemiological analysis must also consider missed diagnoses due to censored cases: individuals who would have developed symptoms of Krabbe disease but died of unrelated causes before symptom onset. The impact of censoring on measures of lifetime risk at birth will be quantified in subsequent sections of the current paper.

Previous Epidemiological Studies of Krabbe Disease

The literature on the epidemiology of Krabbe disease was surveyed, and any article that reported an estimated rate of disease (prevalence, incidence, birth prevalence, etc.) was considered for review.Citation33-Citation36 These previous epidemiological studies of Krabbe disease are summarized in . There are numerous published studies that reported raw numbers of patients suffering from Krabbe disease in a given population.Citation10-Citation15 Since these studies did not estimate disease rates or proportions relative to a reference population, they will not be reviewed in the current paper. Seven studies aimed to estimate the proportion of individuals who will eventually be diagnosed with the disease in a given birth cohort,Citation7,Citation16-Citation21 which, as shown below, is best referred to as lifetime risk at birth. Three studies estimated lifetime risk for other disease categories, but also provided sufficient information to estimate it for Krabbe disease.Citation22-Citation24 Three studies estimated this proportion for isolated sub-populations within Israel and will not be reviewed further.Citation25-Citation27 Several book chapters provided epidemiological estimates without describing the methods used for estimation.Citation28-Citation31

Table 1. Previous studies of Krabbe epidemiology. As discussed in the current paper, many of these estimates are inaccurate or uninterpretable

The studies reporting the proportion of individuals affected by Krabbe disease all generally sought to approximate the same quantity: the proportion of newborns that will develop the disease at any point in their life. It will be asserted below that this quantity corresponds best to lifetime risk at birth. Reported calculations typically involved dividing the number of diagnoses in a given time period by the number of births within a corresponding time period. A broad and often conflicting variety of terms were used to describe this quantity in the literature. Terms used include incidence (e.g., ref. Citation16), prevalence (e.g., ref. Citation18) and birth prevalence (e.g., ref. Citation20). Meikle et al.Citation18 used the term prevalence to denote calculations including pre- and postnatal diagnoses and incidence to denote calculations that include only postnatal cases.

The usage of the terms above to describe the proportion in question does not match formal definitions in epidemiological publications. This misuse of terminology in the literature presents two problems that will subsequently be addressed: first, identifying what parameter these studies intended to estimate and second, evaluating the accuracy of those estimations.

What parameters are estimated?

Given common incorrect use of terms used to describe these epidemiological quantities, the correct interpretations of reported rates in the seven studies listed aboveCitation7,Citation16-Citation21 must be inferred from their stated methods. The proportion of newborns that are, or will be, affected by a disease is best described as birth prevalence or lifetime risk at birth, depending on the nature of the disease being studied. For conditions that are exclusively incident at or near birth, such as cleft palate, they are equivalent, since the number of affected newborns is equal to the number of individuals who will develop the disease at any point in their lives. For conditions with a variable age of onset, however, birth prevalence refers only to those who have the disease at birth. Since the majority of studies included juvenile or adult onset Krabbe cases,Citation7,Citation17-Citation20,Citation22-Citation24 birth prevalence does not adequately describe the estimates in question. It is conceivable that the studies could be describing the birth prevalence of necessary and sufficient factors for developing the disease later in life, but it is not fully known what these factors are (as illustrated above by the challenges of newborn screening and unknown predictive validity of many pathogenic alleles). We propose that lifetime risk at birth describes the desired proportion more effectively. Lifetime risk is a special case of cumulative incidence (which we distinguish from incidence rate) in which the period of time studied is the entire remaining lifetime. Lifetime risk can be estimated conditional on disease-free survival up to a specified age, and thus lifetime risk at birth should be specified as such. For discussions of all the above epidemiological terms, readers are referred to several resources listed in the bibliography.Citation32-Citation37

The seven studies listed above do not capture information regarding which age groups are at greater risk of death due to Krabbe disease. Only one studyCitation38 aimed to measure age-specific mortality rates. Using national and state death certificates in the United States, the number of deaths of individuals with Krabbe disease was estimated for the years 1999–2004. Mortality rates were estimated separately for children less than five years of age and compared with mortality rates of individuals greater than or equal to five. It was found that mortality in children less than five years of age (0.994 deaths per year per million children) was greater than mortality in older individuals (0.007 deaths per year per million individuals). Barczykowski et al.Citation38 also showed that the yearly mortality rate in children less than 5 y of age due to Krabbe disease is a good approximation to the incidence rate of the early infantile form of Krabbe disease.

It is not possible to evaluate the estimates provided in any available book chapters,Citation28-Citation31 since the methods used were not described. These estimates are referred to as incidence, although estimates are not given in units involving time, so they cannot be incidence rates. It is presumed that these estimates correspond to lifetime risk at birth, as described above, but without a description of the calculations used this cannot be determined.

How accurate are the estimates?

Although it can be assumed that the seven studies in questionCitation7,Citation16-Citation21 produced ratios that can be interpreted as estimates of lifetime risk from birth, it is not immediately clear that they succeeded in measuring this quantity accurately. These studies did not follow cohorts longitudinally, but rather obtained the dates of all Krabbe diagnoses in a given time period (hereafter referred to as diagnosis period). Two distinct methods were used to calculate the denominator of the ratios reported in these papers. As will be shown below, one method is flawed, while the other yields approximately accurate estimates of lifetime risk.

Meikle et al.Citation18 estimated lifetime risk at birth using a method referred to in the current study as the “Dx” method (see ). In this study, it was explicitly assumed that the number of diagnoses in the diagnosis period was equal to the number of affected births within that same diagnosis period (affected births referring to any individual who would ever develop symptoms) and that the appropriate denominator must be the number of births occurring in the diagnosis period. Assuming that the effect of censoring is minimal, a constant birth rate, a constant diagnosis rate and that all affected individuals receive a diagnosis, this equivalence must hold true, as shown in Figure S1. Therefore, given these assumptions, the Dx method appears to be an approximately accurate means of estimating the lifetime risk of the disease.

Table 2. Definitions of key terms and the three estimation methods evaluated in the Monte Carlo (MC) simulations

Four studiesCitation7,Citation17,Citation19,Citation20 estimated lifetime risk at birth using a method referred to in the current study as the “DOB” method (see ). In these studies, the earliest and latest birth date of cases diagnosed in the diagnosis period was determined. The total number of births in the population within this birth range was used as the denominator. While this method ensures that all potentially relevant births are reflected in the denominator, it introduces a serious source of error. Any case of Krabbe disease that was born within the birth range and died before the beginning of the diagnosis period remains uncounted in the numerator, resulting in underestimated lifetime risk. Furthermore, the beginning and end of the birth period is determined by the two most extreme birthdates. Since the sample range of birthdates increases with increasing sample size, the severity of this error increases with increased sample size. This source of error was recognized by some study authors, who removed cases that they believed would excessively inflate the denominator.Citation7,Citation17,Citation20 None of these authors reported a quantitative method of selecting cases for removal, and thus their method is not reproducible by a third party. It appears that most of the cases were removed due to an early birth year, which, had they not been removed, would have greatly increased the number of births included in the denominator.

The accuracy of the Dx and DOB methods, and the influence of censored cases on the Dx method, is further analyzed in a Monte Carlo simulation study that is described in the next section of the current paper.

Ozkara and TopcuCitation21 studied the occurrence of Krabbe disease in children 0–5 y of age during the five year period from 1997–2002 in Turkey. They included for analysis all Krabbe patients both born and diagnosed within 1997–2002 and divided this number by the number of total births observed within 1997–2002. This method is not accurate, as the birth cohorts in the study period are not followed for equal amounts of time.

Hagberg et al.Citation16 studied cases of Krabbe disease that had been born from 1953–1967. They divided the total number of affected cases born during this time period by the total number of births during this time period. In this particular sample, however, the patients with the earliest and latest birthdates died in the same year they were born. In this special case, the method used by Hagberg et al.Citation16 is equivalent to the Dx method; thus, the conclusions reported herein regarding the Dx method are applicable to Hagberg’s method.

Case ascertainment

In addition to the various ratios that have been reported and the various calculations used to approximate lifetime risk at birth, varying methods of case ascertainment have been used in the epidemiological studies reviewed above. These methodological differences are large enough to render direct comparisons across studies difficult, if not impossible. Most studies included patients of any age, while others included restricted age ranges.Citation23,Citation24 Some studies included fetuses diagnosed prenatally in the analysis (e.g., ref. Citation19), whereas others do not appear to have done so (e.g., ref. Citation16). Studies report different coverage of the observed population; e.g., Heim et al.Citation17 reported a response rate less than 80% in the queried medical institutions, whereas Hagberg et al.Citation16 reported a 100% response rate). Additionally, there is likely to be a non-negligible number of undiagnosed patients with Krabbe disease in any population; the rate of undiagnosed cases is likely to vary with access to adequate primary health care providers, access to specialists in pediatric neurology and physician experience. Within any study, these factors are largely unknown, rendering corrections for these sources of error impossible. Naturally, the measured proportions are also affected by the true disease proportion in the study population. Unfortunately, it is impossible to separate these last two sources of between-study variability, and it remains possible that country-level differences are merely attributable to country-specific rates of missed diagnoses of Krabbe disease.

Monte Carlo Evaluation of Methods for Lifetime Risk Estimation

A Monte Carlo (MC) simulation study was implemented to further evaluate the accuracy of two methods commonly used to estimate lifetime risk at birth of Krabbe disease: the Dx method and the DOB method (see ). A third method which we shall refer to as the life-table (LT) methodCitation32 was also evaluated. The latter method has the advantage of correcting for error due to censored cases and yielded the most accurate estimates. Although the LT method is often not practical for studies of Krabbe disease due to the extensive data required, we have included it in the simulation to serve as a reference to which the other methods can be compared.

A MC study is a computer simulation in which random samples are repeatedly generated in order to study a phenomenon of interest.Citation39 MC simulations have been used to investigate difficult problems across a broad range of disciplines, e.g., evolutionary biology,Citation40 radiology,Citation41 and finance.Citation42 In the current study, samples of populations with a known lifetime risk at birth of Krabbe disease were generated. Since the lifetime risk was known, the accuracy of the estimation methods could be calculated directly. Because the accuracy of the estimation methods were affected by fixed population parameters, these parameters were systematically varied to simulate the range of populations studied in previous studies of Krabbe epidemiology. All simulations were implemented using the R programming language.Citation43

Parameters and distributional assumptions of MC simulation

The four input parameters to the (MC) study were: T, the length of the diagnosis window in which cases could be registered; N, the constant number of total births each year (both Krabbe and non-Krabbe cases); LR, the true lifetime risk at birth of the disease; and A, the average age at diagnosis of the disease. It was assumed that the birth, diagnosis and age-specific death rates did not change with calendar time and that there was no migration into or out of the observed population. It is important to note that a constant birth rate guarantees that the Dx method performs optimally; any violation of this assumption would result in biased estimates. All settings of the parameters are listed in . 500 MC samples were generated for each of 4320 unique combinations of parameters.

Table 3. Parameter settings used during the Monte Carlo (MC) simulation. A series of MC simulation studies were conducted in which the total number of births per year, along with the birth dates and diagnosis dates of individuals with Krabbe disease, were simulated. Each MC simulation study was conducted using a distinct combination of parameter settings; the range of values used for each parameter is listed here. The range for each parameter was chosen to reflect the range of values observed in published studies of Krabbe disease

The birthdate and diagnosis date for each individual with Krabbe disease were simulated independently as the dates of randomly generated events in Poisson processes. Birth events were simulated by generating inter-arrival times between successive affected births independently drawn from an exponential distribution with rate parameter equal to N times LR until the diagnosis window was exceeded (note that the number of affected births simulated was always much less than N). Starting with the birthdate, each date of diagnosis was determined by drawing a corresponding age from an independent exponential distribution with rate parameter equal to 1 ÷ A. In order to ensure that every single affected individual that could have survived into the diagnosis period was considered, birth and diagnosis dates were generated for the 110 y prior to the start of the diagnosis period.

For each affected birth, the probability of censoring was determined based on all-cause mortality rates in the US in 2009.Citation44 See Supplementary Methods for a detailed description of censoring calculations.

Lifetime risk calculations and criteria for comparison

Lifetime risk was estimated using the Dx, DOB and LT methods. The numerator of both the Dx method and the DOB method used the number of uncensored diagnoses observed in the diagnosis period. The Dx method divided this number by the total number of births (affected and unaffected) occurring within the diagnosis period (i.e., N × T). The DOB method, on the other hand, first required ascertainment of the earliest and latest birthdates of the diagnosed cases. The time between the earliest and latest birthdates is hereafter referred to as the “birth period.” The number of total births occurring within the birth period (i.e., N × length of birth period) was divided into the number of observed diagnoses. The LT method is more intricate than the Dx and DOB methods and is described in detail elsewhere.Citation32 In addition to the information required by the Dx and DOB methods, the LT method requires the number of total deaths (due to all causes) per year and age at death for each member of the entire study population. The LT method uses this all-cause mortality data to estimate the number of censored cases.

Percent bias was calculated for each of the three estimation methods. Percent bias gives the percent over- or underestimation of a method as a percent of the true parameter value. Regression analysis was used to assess the associations between censoring, parameter settings and bias. The average percent bias of each method across all parameter settings was used to draw conclusions about the accuracy of each method.

MC results

The average percent bias scores for each method are listed in , and the results of the regression analyses can be found in . On average, the DOB method underestimates true lifetime risk at birth by 24.9%, although this fluctuates dramatically based on the parameter settings used (significant associations between percent bias and each parameter setting, all p < 0.001). The Dx method underestimates by an average of 0.5%, with a significant association between censoring and percent bias (p < 0.001). The LT method is the most accurate, with an average underestimation of 0.1%, with a significant association between censoring and percent bias (p < 0.05) and between expected age at diagnosis and percent bias (p < 0.001).

Table 4. Results of the Monte Carlo (MC) Study: Accuracy of three estimation methods. Percent bias describes the percent over- or underestimation of the true value, in this case the true lifetime risk at birth of Krabbe disease. Since the accuracy of an estimation method is influenced by factors that vary from study to study, many studies were simulated. How well each estimation method performed across all 2,160,000 simulated studies is described here. On average, the DOB method was significantly more inaccurate than either the Dx or LT method; and the Dx method was significantly more inaccurate than the LT method (p < 0.01 for all three comparisons, using paired t-tests and the Sidak correction for multiple comparisons)

Table 5. Regression results for bias analysis. Percent bias scores were analyzed separately for each estimation method (DOB, Dx, LT)

Discussion and Recommendations for Future Research

Epidemiological measures are an important source of information for monitoring the morbidity and mortality of diseases in a population. They are also critical outcome measures for public health interventions. See the report of Macarov et al.Citation27 for an example in which epidemiological measures are used to document the success of a screening program for Krabbe disease implemented in a community in Israel. In the current review, we describe various problems that limit the utility of many other previously published epidemiological estimates of Krabbe disease rates in larger populations.

As described above, extant studies suffer from inappropriate terminology applied to epidemiological measures of Krabbe disease; in the current review, we show that nearly all previous estimates can be correctly interpreted as lifetime risk at birth. Previous studies often employ flawed methods to estimate lifetime risk at birth. In the current review, the DOB method was shown to be substantially inaccurate, while the Dx method and the LT method suffered from minimal error that was primarily attributable to censoring. The LT method was more accurate than the Dx method, as it is able to correct for most of the error introduced by censored cases. However, the difference in percent bias between the Dx and LT methods was small (less than one percentage point).

Due to the methodological issues discussed above, and given the Monte Carlo study results above, we recommend use of the LT method, when possible, to estimate the lifetime risk of Krabbe disease. In many cases, however, since the data required by the LT method is difficult to obtain in studies of Krabbe disease, the Dx method is an acceptable substitute as long as the population studied has a constant birth rate and diagnosis rate. The DOB method is inaccurate and should not be used. Aside from being the most accurate method, the LT method is superior for at least four other reasons: (1) it can yield estimates of remaining lifetime risk at ages other than birth; (2) it can be used to calculate estimates of standard error; (3) unlike the Dx method, the LT method is accurate whether or not the number of births per year remains constant; and (4) it is less affected by censoring. Since the association between censoring and bias is greater when the disease of interest arises later in life, the LT method is the only reasonable choice if the disease has a later onset.

As mentioned above, the between-study differences in case ascertainment, statistical methodology, and diagnostic capabilities are large enough that comparison of rates across studies is highly questionable. Future studies should pay special attention to case ascertainment, especially for older individuals with Krabbe disease who are more likely to be missed. If possible, unborn cases that have been diagnosed prenatally should be included in the estimated rate.

Age-specific mortality rates have been published for the United States,Citation38 but have not been published for any other country. Although not treated at length in the current paper, mortality rates provide useful information and should be similarly estimated and published for countries outside of the United States.

The results and conclusions of the current study are directly applicable to many disorders besides Krabbe disease. The DOB and Dx methods reviewed above have been applied in previous studies to various leukodystrophies,Citation17 sphingolipidoses,Citation21 lysosomal storage disorders,Citation7,Citation18-Citation20 and inborn errors of metabolism,Citation22,Citation23 and all of the recommendations in the current paper are relevant to these disease categories as well.

Abbreviations:
GALC=

galactosylceramidase

nmol/h/mg=

nanomol per hour per milligram protein

Dx method=

method of calculating lifetime risk defined in Table 2

DOB method=

method of calculating lifetime risk defined in Table 2

LT method=

method of calculating lifetime risk defined in Table 2

MC=

Monte Carlo

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Disclosure of Potential Conflicts of Interest

No potential conflict of interest was disclosed.

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