References
- J.ChoiB.BatchelorC.WonJ.ChungNitrate reduction by green rusts modified with trace metalsChemosphere862012860865
- V.ReE.SacchiE.AllaisThe use of nitrate isotopes to identify contamination sources in the Bou-Areg aquifer (Morocco)Proc. Earth Plan. Sci.72013729732
- T.Y.K.ChanVegetable-borne nitrate and nitrite and the risk of methaemoglobinaemiaToxicol. Lett.2002011107108
- O.S.G.P.SoaresJ.J.M.ÓrfãoM.F.R.PereiraNitrate reduction in water catalysed by Pd–Cu on different supportsDesalination2792011367374
- M.ShrimaliK.P.SinghNew methods for nitrate removal from waterEnviron. Pollut.1122001351359
- K.A.KaranasiosI.A.VasiliadouS.PavlouD.V.VayenasHydrogenotrophic denitrification of potable water: a reviewJ. Hazard. Mater.18020102037
- M.A.GomezJ.Gonzalez-LopezE.Hontoria-GarcıaInfluence of carbon source on nitrate removal of contaminated groundwater in a denitrifying submerged filterJ. Hazard. Mater.8020006980
- B.MorenoM.A.GomezA.RamosJ.Gonzalez-LopezE.HontoriaInfluence of inocula over start up of a denitrifying submerged filter applied to nitrate contaminated ground water treatmentJ. Hazard. Mater.1272005180186
- H.YanW.HuangC.YanX.GongS.JiangY.ZhaoJ.WangY.ShiStructure and mechanism of a nitrate transporterCell Rep.32013716723
- Y.PanL.YeB.NiZ.YuanEffect of pH on N2O reduction and accumulation during denitrification by methanol utilizing denitrifiersWater Res.46201248324840
- S.NajmudinJ.Pablo GonzalezC.TrincaoA.CoelhoM.F.S.A.MukhopadhyayC.Nuno CerqueiraI.Carlos RomaoJ.G.MouraD.Jose MouraC.BrondinoJ.Maria RomaoPeriplasmic nitrate reductase revisited: a sulfur atom completes the sixth coordination of the catalytic molybdenumJ. Biol. Inorg. Chem.132008737753
- O.EinsleStructure and function of formate-dependent cytochrome C nitrite reductase NrfAMethods Enzym.496201110.1016/B978-0-12-386489-5.00016-6
- S.GavanjiH.A.AzizB.LarkiA.MojiriBioinformatics prediction of interaction of silver nitrate and nano silver on catalase and nitrate reductaseInt. J. Sci. Res. Environ. Sci.1220132635
- J.GeorrgeV.UmraniaIn silico identification of putative drug targets in Klebsiella pneumonia MGH78578Indian J. Biotechnol.102011432439
- http://www.sbg.bio.ic.ac.uk/phyre2/html/page.cgi?id=index
- http://raptorx.uchicago.edu/
- http://manaslu.aecom.yu.edu/M4T/
- http://toolkit.tuebingen.mpg.de/hhpred
- http://swissmodel.expasy.org/
- http://modbase.compbio.ucsf.edu/ModWeb20-html/modweb.html
- R.A.LaskowaskiM.W.MacarthurD.S.MossJ.M.ThorntonProcheck-a program to check the stereochemical quality of protein structuresJ. Appl. Crystallogr.261993283291
- R.LuthyJ.U.BowieD.EisenbergAssessment of protein models with 3-dimensional profilesNature35619928385
- G.M.MorrisD.S.GoodsellR.S.HallidayR.HueyW.E.HartR.K.BelewA.J.OlsonAutomated docking using a Lamarckian genetic algorithm and an empirical binding free energy functionJ. Comput. Chem.19199816391640
- http://www.ncbi.nlm.nih.gov/BLAST
- R.G.BodadeS.D.BeedkarA.V.ManwarC.N.KhobragadeInt. J. Biol. Macromol.472010298303
- http://swissmodel.expasy.org/workspace
- N.GuexM.C.PeitschSWISS-MODEL and the SwissPdb Viewer: an environment for comparative protein modelingElectrophoresis1815199727142723
- R.SanchezA.SaliLarge-scale protein structure modeling of the Saccharomyces cerevisiae genomeProc. Natl. Acad. Sci. U.S.A.9519981359713602
- W.R.PearsonFlexible sequence similarity searching with the FASTA3 program packageMethods Mol. Biol.1322000185219
- H.M.BermanT.BattistuzT.N.BhatW.F.BluhmP.E.BourneK.BurkhardtZ.FengG.L.GillilandL.IypeS.Jainet al.The Protein Data BankActa Crystallogr. D: Biol. Crystallogr.582002899907
- B.BoeckmannA.BairochR.ApweilerM.C.BlatterA.EstreicherE.GasteigerM.J.MartinK.MichoudC.O’DonovanI.Phanet al.The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003Nucleic Acids Res.312003365370
- A.Sali100,000 protein structures for the biologistNat. Struct. Biol.5199810291032
- D.VitkupE.MelamudJ.MoultC.SanderCompleteness in structural genomicsNat. Struct. Biol.82001559566
- S.F.AltschulT.L.MaddenA.A.SchafferJ.ZhangZ.ZhangW.MillerD.J.LipmanGapped BLAST and PSI-BLAST: a new generation of protein database search programsNucleic Acid Res.25199733893402
- S.R.EddyProfile hidden Markov modelsBioinformatics141998755763
- J.PengJ.XuRaptorX: exploiting structure information for protein alignment by statistical inferenceProteins792011161171
- J.SodingProtein homology detection by HMM-HMM comparisonBioinformatics2172005951960
- L.A.KelleyM.J.SternbergProtein structure prediction on the Web: a case study using the Phyre serverNat. Protoc.432009363371
- I.A.MalikS.SharifF.MalikA.HakimaliW.A.KhanS.H.BadruddinNutritional aspects of mammary carcinogenesis: a case–control studyJ. Pak. Med. Assoc.4361993118120
- B.K.RaiA.FiserMultiple mapping method: a novel approach to the sequence to structure alignment problem in comparative protein structure modelingProteins632006644661
- A.SaliT.L.BlundellComparative protein modelling by satisfaction of spatial restraintsJ. Mol. Biol.2341993779
- M.YadavA.SinghS.RathaurE.LiebauJ. Mol. Graph. Model.282010435445
- http://mordred.bioc.cam.ac.uk/∼rapper/rampage.php
- F.MusatA.GalushkoJ.JacobF.WiddelM.KubeR.ReinhardtAnaerobic degradation of naphthalene and 2-methylnaphthalene by strains of marine sulfate-reducing bacteriaEnviron. Microbiol.112009209219
- F.WiddelK.KnittelA.GalushkoAnaerobic hydrocarbon-degrading microorganisms: an overviewK.N.TimmisHandbook of Hydrocarbon and Lipid Microbiology2010SpringerBerlin Heidelberg, Germany19982021
- D.XuJ.C.CotePhylogenetic relationships between Bacillus species and related genera inferred from comparison of 39 end 16S rDNA and 59 end 16S–23S ITS nucleotide sequencesInt. J. Syst. Evol. Microbiol.532003695704
- S.R.PauletaS.Dell AcquaI.MouraNitrous oxide reductaseCoord. Chem. Rev.201010.1016/j.ccr.2012.05.026
- SuhartiS.de VriesBiochem. Soc. Trans.332005130
- I.VerbaendertN.BoonP.De VosK.HeylenSyst. Appl. Microbiol.342011385
- http://www.uniprot.org/uniprot/?query=organism:272620±keyword:181
- R.SeenivasaganR.KasimaniM.ParthibanR.KalidossP.ShanmughavelComparative modeling of viral protein R (VpR) from human immunodeficiency virus 1 (HIV1)J. Proteomics Bioinform.12008073076
- D.SeeligerB.L.de GrootLigand docking and binding site analysis with PyMOL and Autodock/VinaJ. Comput. Aided Mol. Des.242010417422