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Original Articles

Hidden diversity in the non‐caryophyllaceous plant‐parasitic members of Microbotryum (Pucciniomycotina: Microbotryales)

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Pages 297-306 | Received 01 Aug 2007, Accepted 01 Mar 2009, Published online: 11 Mar 2010

References

  • Antonovics , A. , Hood , M.E. and Partain , J.L. 2002 . The ecology and genetics of a host shift: Microbotryum as a model system . American Naturalist , 160 : S40 – S53 .
  • Bailey , J.P. and Stace , C.A. 1992 . Chromosome number, morphology, pairing, and DNA values of species and hybrids in the genus Fallopia (Polygonaceae) . Plant Systematics and Evolution , 180 : 29 – 52 .
  • Bauer , R. , Begerow , D. , Sampaio , J.P. , Weiss , M. and Oberwinkler , F. 2006 . The simple‐septate basidiomycetes: a synopsis . Mycolo‐gical Progress , 5 : 41 – 66 .
  • Begerow , D. , Lutz , M. and Oberwinkler , F. 2002 . Implications of molecular characters for the phylogeny of the genus Entyloma . Mycological Research , 106 : 1392 – 1399 .
  • Begon , M. , Townsend , C.R. and Harper , J.L. 2006 . Ecology ‐ From Individuals to Ecosystems. , Fourth Edition , Malden : Blackwell Publishing .
  • Bucheli , E. , Gautschi , B. and Shykoff , J.A. 2000 . Host‐specific differentiation in the anther smut fungus Microbotryum violaceum as revealed by microsatellites . Journal of Evolutionary Biology , 13 : 188 – 198 .
  • Bucheli , E. , Gautschi , B. and Shykoff , J.A. 2001 . Differences in population structure of the anther smut fungus Microbotryum violaceum on two closely related host species, Silene latifolia and S. dioica . Molecular Ecology , 10 : 285 – 294 .
  • Ciferri , R. 1931 . Quinta contribuzione allo studio degli Ustilaginales . Annals of Mycology , 29 : 1 – 74 .
  • Farris , J.S. 1989 . The retention index and the rescaled consistency index . Cladistics , 5 : 417 – 419 .
  • Felsenstein , J. 1981 . Evolutionary trees from DNA sequences: a maximum likelihood approach . Journal of Molecular Evolution , 17 : 368 – 376 .
  • Felsenstein , J. 1985 . Confidence limits on phylogenies: an approach using the bootstrap . Evolution , 39 : 783 – 791 .
  • Ferraris , T. 1902 . Primo elenco di Funghi del Piemonte . Annuario Reale Istituto Botanico di Roma , 9 : 187 – 220 .
  • Fernandez , C.C. , Shevock , J.R. , Glazer , A.N. and Thompson , J.N. 2006 . Cryptic species within the cosmopolitan desiccation‐tolerant moss Grimmia laevigata . Proceedings of the National Academy of Sciences USA , 103 : 637 – 642 .
  • Fitch , W.M. 1971 . Towards defining the course of evolution : minimal change for a specified tree topology . Systematic Zoology , 20 : 406 – 416 .
  • Gascuel , O. 1997 . BIONJ, an improved version of the NJ algorithm based on a simple model of sequence data . Molecular Biology and Evolution , 14 : 685 – 695 .
  • Gatesy , J. , Desalle , R. and Wheeler , W. 1993 . Alignment‐ambiguous nucleotide sites and the exclusion of systematic data . Molecular Phylogenetics and Evolution , 2 : 152 – 157 .
  • Gardes , M. and Bruns , T.D. 1993 . ITS primers with enhanced specificity for basidiomycetes ‐ application to the identification of mycorrhizae and rusts . Molecular Ecology , 2 : 113 – 118 .
  • Giribet , G. and Wheeler , W.C. 1999 . On gaps . Molecular Phylogenetics and Evolution , 13 : 132 – 143 .
  • Göker , M. , Voglmayr , H. , Riethmüller , A. and Oberwinkler , F. 2007 . How do obligate parasites evolve? A multi‐gene phylogenetic analysis of downy mildews . Fungal Genetics and Biology , 44 : 105 – 122 .
  • Göker , M. , Voglmayr , H. , García‐Blázquez , G. and Oberwinkler , F. 2009 . Species delimitation in downy mildews: the case of Hyaloperonospora in the light of nuclear ribosomal internal transcribed spacer and large subunit sequences . Mycological Research , 113 : 308 – 325 .
  • Jousson , O. , Bartoli , P. and Pawlowski , J. 2000 . Cryptic speciation among intestinal parasites (Trematoda: Digenea) infecting sympatric host fishes (Sparidae) . Journal of Evolutionary Biology , 13 : 778 – 785 .
  • Katoh , K. , Misawa , K. , Kuma , K. and Miyata , T. 2002 . MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform . Nucleic Acids Research , 30 : 3059 – 3066 .
  • Katoh , K. , Kuma , K. , Toh , H. and Miyata , T. 2005 . MAFFT version 5 : improvement in accuracy of multiple sequence alignment . Nucleic Acids Research , 33 : 511 – 518 .
  • Kemler , M. , Göker , M. , Oberwinkler , F. and Begerow , D. 2006 . Implications of molecular characters for the phylogeny of the Mi‐crobotryaceae (Basidiomycota: Urediniomycetes) . BMC Evolutionary Biology , 6 : 35
  • Kirchner , O. 1923 . Der Antherenbrand von Salvia, Ustilago betonicae Beck . Zeitschrift fur Pflanzenkrankheiten , 33 : 97 – 104 .
  • Le Gac , M. , Hood , M.E. , Fournier , E. and Giraud , T. 2007 . Phylogenetic evidence of host‐specific cryptic species in the anther smut fungus . Evolution , 61 : 15 – 26 .
  • Lee , M.S.Y. 2001 . Unalignable sequences and molecular evolution . Trends in Ecology and Evolution , 16 : 681 – 685 .
  • Lee , C. , Grasso , C. and Sharlow , M.F. 2002 . Multiple sequence alignment using partial order graphs . Bioinformatics , 18 : 452 – 464 .
  • Lindeberg , B. 1959 . Ustilaginales of Sweden . Symbolae Botanicae Upsalienses , 16 : 1 – 175 .
  • Liro , J.I. 1924 . Die Ustilagineen Finnlands I . Annales Academiae Scientiarum Fennicae, Series A , 17 : 1 – 636 .
  • Lopez‐Villavicencio , M. , Enjalbert , J. , Hood , M.E. , Shykoff , J.A. , RAQUIN , C. and GIRAUD , T. 2005 . The anther smut disease on Gypsophila repens: a case of parasite sub‐optimal performance following a recent host shift? . Journal of Evolutionary Biology , 18 : 1293 – 1303 .
  • Lutz , M. , Göker , M. , Piatek , M. , Kemler , M. , Begerow , D. and Oberwinkler , F. 2005 . Anther smuts of Caryophyllaceae: Molecular characters indicate host‐dependent species delimitation . Mycological Progress , 4 : 225 – 238 .
  • Lutz , M. , Piatek , M. , Kemler , M. , Chlebicki , A. and Oberwinkler , F. 2008 . Anther smuts of Caryophyllaceae: Molecular analyses reveal further new species . Mycological Research , 112 : 1280 – 1296 .
  • O'Donnell , K.L. 1992 . Ribosomal DNA internal transcribed spacers are highly divergent in the phytopathogenic ascomycete Fusarium sambucinum (Gibberella pulicaris) . Current Genetics , 22 : 213 – 220 .
  • O'Donnell , K.L. 1993 . “ Fusarium and its near relatives ” . In The Fungal Holomorph: Mitotic, Meiotic and Pleomorphic Speciation in Fungal Syste‐matics , Edited by: Reynolds , D.R. and Taylor , J.W. 225 – 233 . Wallingford : CAB International .
  • Pei , J. , Sadreyev , R. and Grishin , N.V. 2003 . PCMA: fast and accurate multiple sequence alignment based on profile consistency . Bioinformatics , 19 : 427 – 428 .
  • Piepenbring , M. 2002 . Morphology of Liroa emodensis (Micro‐botryales, Basidiomycota) on Polygonum chinense . Fungal Science , 17 : 55 – 64 .
  • Posada , D. and Crandall , K.A. 1998 . Modeltest: testing the model of DNA substitution . Bioinformatics , 14 : 817 – 818 .
  • Robba , L. , Russell , S.J. , Barker , G.L. and Brodie , J. 2006 . Assessing the use of the mitochondrial cox1 marker for use in DNA barcoding of red algae (Rhodophyta) . American Journal of Botany , 93 : 1101 – 1108 .
  • Rodr´iguez , F. , Oliver , J.L. , Mar´In , A. and Medina , J.R. 1990 . The general stochastic model of nucleotide substitution . Journal of Theoretical Biology , 142 : 485 – 501 .
  • Sebald , O. , Seybold , S. and Philippi , G. 1993 . Die Farn‐ und Blutenpflanzen Baden‐W¨urttembergs¨ , Stuttgart : Eugen Ulmer GmbH & Co. . Band 1
  • Shykoff , J.A. , Meyhofer , A. and Bucheli , E. 1999 . Genetic isolation among host races of the anther smut fungus Microbotryum violaceum on three host plant species . International Journal of Plant Sciences , 160 : 907 – 916 .
  • Sloan , D.B. , Giraud , T. and Hood , M.E. 2008 . Maximized virulence in a sterilizing pathogen: the anther‐smut fungus and its co‐evolved hosts . Journal of Evolutionary Biology , 21 : 1544 – 1554 .
  • Smith , M.A. , Woodley , N.E. , Janzen , D.H. , Hallwachs , W. and HEBERT , P.D. 2006 . DNA barcodes reveal cryptic host‐specificity within the presumed polyphagous members of a genus of parasitoid flies (Diptera: Tachinidae) . Proceedings of the National Academy of Sciences USA , 103 : 3657 – 3662 .
  • Stamatakis , A. 2006a . RAxML‐VI‐HPC: maximum likelihood‐based phylogenetic analyses with thousands of taxa and mixed models . Bioinformatics , 22 : 2688 – 2690 .
  • Stamatakis , A. 2006b . “ Phylogenetic models of rate heterogeneity: A high performance computing perspective ” . In Proceedings of IPDP2006 Rhodos, , Greece
  • Stoll , M. , Begerow , D. and Oberwinkler , F. 2005 . Molecular phylogeny of Ustilago, Sporisorium, and related taxa based on combined analyses of rDNA sequences . Mycological Research , 109 : 342 – 356 .
  • Swofford , D.L. 2002 . PAUP*. Phylogenetic Analysis using Parsimony (*and other methods) , Sunderland : Sinauer Associates . Version 4
  • Thompson , J.N. 2005 . The Geographic Mosaic of Coevolution , Chicago : University of Chicago Press .
  • Tiebre , M.S. , Vanderhoeven , S. , Saad , L. and Mahy , G. 2007 . Hybridization and sexual reproduction in the invasive alien Fallopia (Polygonaceae) complex in Belgium . Annals of Botany , 99 : 193 – 203 .
  • Trontelj , P. and Fiser , C. 2009 . Cryptic species diversity should not be trivialised . Systematics and Biodiversity , 7 : 1 – 3 .
  • Vánky , K. 1994 . European Smut Fungi , Stuttgart : Gustav Fischer Verlag .
  • Vánky , K. 1998 . The genus Microbotryum (smut fungi) . Mycotaxon , 67 : 33 – 118 .
  • Wagstaff , S.J. and Olmstead , R.G. 1997 . Phylogeny of Labiatae and Verbenaceae inferred from rbcL sequences . Systematic Botany , 22 : 165 – 179 .
  • White , T.J. , Bruns , T.D. , Lee , S. and Taylor , J.W. 1990 . “ Amplification and Direct Sequencing of Fungal Ribosomal RNA Genes for Phylogenetics ” . In PCR Protocols, a Guide to Methods and Applications , Edited by: Innis , M.A. , Gelfand , D.H. , Sninsky , J.J. and White , T.J. 315 – 322 . San Diego : Academic Press .
  • Zhou , D. and Hyde , K.D. 2001 . Host‐specificity, host‐exclusivity, and host‐recurrence in saprobic fungi . Mycological Research , 105 : 1449 – 1457 .
  • Corresponding author. Email: [email protected]

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