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Original Articles

Polyphyletic origin of MERS coronaviruses and isolation of a novel clade A strain from dromedary camels in the United Arab Emirates

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Pages 1-9 | Received 28 Jun 2016, Accepted 10 Oct 2016, Published online: 25 Jan 2019

  • ChanJF,LauSK,ToKKet al.Middle East respiratory syndrome coronavirus: another zoonotic betacoronavirus causing SARS-like disease.Clin Microbiol Rev2015; 28:465–522.
  • van BoheemenS,de GraafM,LauberCet al.Genomic characterization of a newly discovered coronavirus associated with acute respiratory distress syndrome in humans.mBio2012; 3:e00473–e00412.
  • ZakiAM,van BoheemenS,BestebroerTMet al.Isolation of a novel coronavirus from a man with pneumonia in Saudi Arabia.N Engl J Med2012; 367:1814–1820.
  • PereraRA,WangP,GomaaMRet al.Seroepidemiology for MERS coronavirus using microneutralisation and pseudoparticle virus neutralisation assays reveal a high prevalence of antibody in dromedary camels in Egypt.Euro Surveill2013; 18:20574.
  • ReuskenCB,HaagmansBL,MullerMAet al.Middle East respiratory syndrome coronavirus neutralising serum antibodies in dromedary camels: a comparative serological study.Lancet Infect Dis2013; 13:859–866.
  • WooPC,LauSK,WerneryUet al.Novel betacoronavirus in dromedaries of the Middle East, 2013.Emerg Infect Dis2014; 20:560–572.
  • WooPC,WangM,LauSKet al.Comparative analysis of twelve genomes of three novel group 2c and group 2d coronaviruses reveals unique group and subgroup features.J Virol2007; 81:1574–1585.
  • LauSK,LiKS,TsangAKet al.Genetic characterization of Betacoronavirus lineage C viruses in bats reveals marked sequence divergence in the spike protein of Pipistrellus bat coronavirus HKU5 in Japanese Pipistrelle: implications for the origin of the novel Middle East respiratory syndrome coronavirus.J Virol2013; 87:8638–8650.
  • MemishZA,MishraN,OlivalKJet al.Middle East respiratory syndrome coronavirus in bats, Saudi Arabia.Emerg Infect Dis2013; 19:1819–1823.
  • CormanVM,KalliesR,PhilippsHet al.Characterization of a novel betacoronavirus related to Middle East respiratory syndrome coronavirus in European hedgehogs.J Virol2014; 88:717–724.
  • WangQ,QiJ,YuanYet al.Bat origins of MERS-CoV supported by bat coronavirus HKU4 usage of human receptor CD26.Cell Host Microbe2014; 16:328–337.
  • YangY,DuL,LiuCet al.Receptor usage and cell entry of bat coronavirus HKU4 provide insight into bat-to-human transmission of MERS coronavirus.Proc Natl Acad Sci USA2014; 111:12516–12521.
  • SabirJS,LamTT,AhmedMMet al.Co-circulation of three camel coronavirus species and recombination of MERS-CoVs in Saudi Arabia.Science2016; 351:81–84.
  • WerneryU,CormanVM,WongEYet al.Acute Middle East respiratory syndrome coronavirus infection in livestock dromedaries, Dubai, 2014.Emerg Infect Dis2015; 21:1019–1022.
  • WerneryU,RasoulIE,WongEYet al.A phylogenetically distinct Middle East respiratory syndrome coronavirus detected in a dromedary calf from a closed dairy herd in Dubai with rising seroprevalence with age.Emerg Microbes Infect2015; 4:e74.
  • CottenM,WatsonSJ,KellamPet al.Transmission and evolution of the Middle East respiratory syndrome coronavirus in Saudi Arabia: a descriptive genomic study.Lancet2013; 382:1993–2002.
  • HaagmansBL,Al DhahirySH,ReuskenCBet al.Middle East respiratory syndrome coronavirus in dromedary camels: an outbreak investigation.Lancet Infect Dis2014; 14:140–145.
  • CowlingBJ,ParkM,FangVJet al.Preliminary epidemiological assessment of MERS-CoV outbreak in South Korea, May to June 2015.Euro Surveill2015; 20:7–13.
  • WooPC,LauSK,ChuCMet al.Characterization and complete genome sequence of a novel coronavirus, coronavirus HKU1, from patients with pneumonia.J Virol2005; 79:884–895.
  • WooPC,LauSK,YipCCet al.Comparative analysis of 22 coronavirus HKU1 genomes reveals a novel genotype and evidence of natural recombination in coronavirus HKU1.J Virol2006; 80:7136–7145.
  • LauSK,LeeP,TsangAKet al.Molecular epidemiology of human coronavirus OC43 reveals evolution of different genotypes over time and recent emergence of a novel genotype due to natural recombination.J Virol2011; 85:11325–11337.
  • DrummondAJ,RambautA.BEAST: Bayesian evolutionary analysis by sampling trees.BMC Evol Biol2007; 7:214.
  • LauSK,WooPC,LiKSet al.Discovery of a novel coronavirus, China Rattus coronavirus HKU24, from Norway rats supports the murine origin of Betacoronavirus 1 and has implications for the ancestor of Betacoronavirus lineage A.J Virol2015; 89:3076–3092.
  • KilianskiA,MielechAM,DengXet al.Assessing activity and inhibition of Middle East respiratory syndrome coronavirus papain-like and 3C-like proteases using luciferase-based biosensors.J Virol2013; 87:11955–11962.
  • ForniD,CaglianiR,MozziAet al.Extensive positive selection drives the evolution of nonstructural proteins in lineage C betacoronaviruses.J Virol2016; 90:3627–3639.
  • ForniD,FilippiG,CaglianiRet al.The heptad repeat region is a major selection target in MERS-CoV and related coronaviruses.Sci Rep2015; 5:14480.
  • HunterJC,NguyenD,AdenBet al.Transmission of Middle East respiratory syndrome coronavirus infections in healthcare settings, Abu Dhabi.Emerg Infect Dis2016; 22:647–656.
  • LauSK,WooPC,LiKSet al.Severe acute respiratory syndrome coronavirus-like virus in Chinese horseshoe bats.Proc Natl Acad Sci USA2005; 102:14040–14045.
  • WooPC,LauSK,LiKSet al.Molecular diversity of coronaviruses in bats.Virology2006; 351:180–187.
  • AzharEI,El-KafrawySA,FarrajSAet al.Evidence for camel-to-human transmission of MERS coronavirus.N Engl J Med2014; 370:2499–2505.
  • MemishZA,CottenM,MeyerBet al.Human infection with MERS coronavirus after exposure to infected camels, Saudi Arabia, 2013.Emerg Infect Dis2014; 20:1012–1015.
  • GuanY,ZhengBJ,HeYQet al.Isolation and characterization of viruses related to the SARS coronavirus from animals in southern China.Science2003; 302:276–278.
  • LiW,ShiZ,YuMet al.Bats are natural reservoirs of SARS-like coronaviruses.Science2005; 310:676–679.
  • CormanVM,EckerleI,MemishZAet al.Link of a ubiquitous human coronavirus to dromedary camels.Proc Natl Acad Sci USA2016; 113:9864–9869.
  • ChuDK,PoonLL,GomaaMMet al.MERS coronaviruses in dromedary camels, Egypt.Emerg Infect Dis2014; 20:1049–1053.
  • ChuDK,OladipoJO,PereraRAet al.Middle East respiratory syndrome coronavirus (MERS-CoV) in dromedary camels in Nigeria.2015Euro Surveill2015; 20.
  • LauSK,PoonRW,WongBHet al.Coexistence of different genotypes in the same bat and serological characterization of Rousettus bat coronavirus HKU9 belonging to a novel betacoronavirus subgroup.J Virol2010; 84:11385–11394.
  • LauSK,FengY,ChenHet al.Severe Acute Respiratory Syndrome (SARS) Coronavirus ORF8 protein is acquired from SARS-related coronavirus from greater horseshoe bats through recombination.J Virol2015; 89:10532–10547.
  • HerreweghAA,SmeenkI,HorzinekMCet al.Feline coronavirus type II strains 79-1683 and 79-1146 originate from a double recombination between feline coronavirus type I and canine coronavirus.J Virol1998; 72:4508–4514.
  • WangY,LiuD,ShiWet al.Origin and possible genetic recombination of the Middle East respiratory syndrome coronavirus from the first imported case in China: phylogenetics and coalescence analysis.mBio2015; 6:e01280–e01215.