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Emerging Microbes & Infections Volume 5, 2016 - Issue 1
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Original Articles

Fecal bacterial microbiome diversity in chronic HIV-infected patients in China

Yang SunDepartment of Infectious Diseases, Shanghai Public Health Clinical Center, Fudan University, Shanghai201508, China;Department of Laboratory Medicine, Shanghai Guanhua Hospital, Shanghai200065, China;Shanghai TargetDrug Ltd., Shanghai201202, China;These authors contributed equally to this work.
,
Yingfei MaCenter for Synthetic Biology Engineering Research, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen518055, China;Department of Laboratory Medicine, Shanghai Guanhua Hospital, Shanghai200065, China;These authors contributed equally to this work.
,
Ping LinClinical Laboratory, Shanghai Mental Health Center, Shanghai Jiao Tong University School of Medicine, Shanghai200065, China;Shanghai TargetDrug Ltd., Shanghai201202, China;These authors contributed equally to this work.
,
Yi-Wei TangClinical Microbiology Service, Department of Laboratory Medicine, Memorial Sloan-Kettering Cancer Center, New York, NY10065, USA
,
Liying YangDepartments of Pathology and Medicine, New York University School of Medicine, New York, NY10016, USA;The Department of Veterans Affairs New York Harbor Healthcare System, New York, NY10010, USA
,
Yinzhong ShenDepartment of Infectious Diseases, Shanghai Public Health Clinical Center, Fudan University, Shanghai201508, China
,
Renfan ZhangDepartment of Infectious Diseases, Shanghai Public Health Clinical Center, Fudan University, Shanghai201508, China
,
Li LiuDepartment of Infectious Diseases, Shanghai Public Health Clinical Center, Fudan University, Shanghai201508, China
,
Jun ChengDepartment of Infectious Diseases, Shanghai Public Health Clinical Center, Fudan University, Shanghai201508, China
,
Jiashen ShaoDepartment of Infectious Diseases, Shanghai Public Health Clinical Center, Fudan University, Shanghai201508, China
,
Tangkai QiDepartment of Infectious Diseases, Shanghai Public Health Clinical Center, Fudan University, Shanghai201508, China
,
Yan TangDepartment of Infectious Diseases, Shanghai Public Health Clinical Center, Fudan University, Shanghai201508, China
,
Rentian CaiDepartment of Infectious Diseases, Shanghai Public Health Clinical Center, Fudan University, Shanghai201508, China
,
Liqian GuanDepartment of Infectious Diseases, Shanghai Public Health Clinical Center, Fudan University, Shanghai201508, China
,
Bin LuoDepartment of Infectious Diseases, Shanghai Public Health Clinical Center, Fudan University, Shanghai201508, China
,
Meiyan SunDepartment of Infectious Diseases, Shanghai Public Health Clinical Center, Fudan University, Shanghai201508, China
,
Ben LiShanghai TargetDrug Ltd., Shanghai201202, ChinaCorrespondence[email protected]
,
Zhiheng PeiDepartments of Pathology and Medicine, New York University School of Medicine, New York, NY10016, USA;The Department of Veterans Affairs New York Harbor Healthcare System, New York, NY10010, USA
&
Hongzhou LuDepartment of Infectious Diseases, Shanghai Public Health Clinical Center, Fudan University, Shanghai201508, ChinaCorrespondence[email protected]
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Pages 1-7 | Received 06 Jul 2015, Accepted 23 Dec 2015, Published online: 25 Jan 2019

  • BengmarkS.Ecological control of the gastrointestinal tract. The role of probiotic flora.Gut1998; 42:2–7.
  • O’KeefeSJ.Nutrition and colonic health: The critical role of the microbiota.Curr Opin Gastroenterol2008; 24:51–58.
  • ZhaoL,ShenJ.Whole-body systems approaches for gut microbiota-targeted, preventive healthcare.J Biotechnol2010; 149:183–190.
  • QinJ,LiR,RaesJet al.A human gut microbial gene catalogue established by metagenomic sequencing.Nature2010; 464:59–65.
  • LozuponeCA,StombaughJI,GordonJIet al.Diversity, stability and resilience of the human gut microbiota.Nature2012; 489:220–230.
  • NamY-D,JungM-J,RohSWet al.Comparative analysis of Korean human gut microbiota by barcoded pyrosequencing.PLoS One2011; 6:e22109.
  • MaccaferriS,BiagiE,BrigidiP.Metagenomics: Key to human gut microbiota.Dig Dis2011; 29:525–530.
  • ZoetendalEG,Rajilic-StojanovicM,de VosWM.High-throughput diversity and functionality analysis of the gastrointestinal tract microbiota.Gut2008; 57:1605–1615.
  • Rajilić-StojanovićM,SmidtH,de VosWM.Diversity of the human gastrointestinal tract microbiota revisited.Environ Microbiol2007; 9:2125–2136.
  • LuHZ.The rule of conventional diagnosis and treatment for HIV/AIDS and its related diseases.Shanghai: The press of Shanghai science and technology,2009:1–61.
  • Le NguyenH,PitakpolratP,SirivichayakulSet al.Minority HIV-1 resistant variants in recent infection and in patients who failed first-line antiretroviral therapy with no detectable resistance-associated mutations in Thailand.J Med Virol2012; 84:713–720.
  • MutluEA,KeshavarzianA,LosurdoJet al.A compositional look at the human gastrointestinal microbiome and immune activation parameters in HIV infected subjects.PloS Pathog2014; 10:e1003829.
  • ParkSY,GoekenN,LeeHJet al.Developing high-throughput HIV incidence assay with pyrosequencing platform.J Virol2014; 88:2977–2990.
  • BellecaveP,Recordon-PinsonP,PapuchonJet al.Detection of low-frequency HIV type 1 reverse transcriptase drug resistance mutations by ultradeep sequencing in naive HIV type 1-infected individuals.AIDS Res Hum Retroviruses2014; 30:170–173.
  • ChakravortyS,HelbD,BurdayMet al.A detailed analysis of 16S ribosomal RNA gene segments for the diagnosis of pathogenic bacteria.J Microbiol Methods2007; 69:330–339.
  • HaasBJ,GeversD,EarlAMet al.Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons.Genome Res2011; 21:494–504.
  • NossaCW,OberdorfWE,YangLet al.Design of 16S rRNA gene primers for 454 pyrosequencing of the human foregut microbiome.World J Gastroenterol2010; 16:4135–4144.
  • SakamotoM,UmedaM,IshikawaIet al.Comparison of the oral bacterial flora in saliva from a healthy subject and two periodontitis patients by sequence analysis of 16S rDNA libraries.Microbiol Immunol2000; 44:643–652.
  • CaporasoJG,KuczynskiJ,StombaughJet al.QIIME allows analysis of high-throughput community sequencing data.Nat Methods2010; 7:335–336.
  • SegataN,IzardJ,WaldronLet al.Metagenomic biomarker discovery and explanation.Genome Biol2011; 12:R60.
  • DinhDM,VolpeGE,DuffaloCet al.The intestinal microbiota, microbial translocation, and systemic inflammation in chronic HIV infection.J Infect Dis2015; 211:19–27.
  • LozuponeCA,LiM,CampbellTBet al.Alterations in the gut microbiota associated with HIV-1 infection.Cell Host Microbe2013; 14:329–339.
  • VolpeGE,WardH,MwamburiMet al.Associations of cocaine use and HIV infection with the intestinal microbiota, microbial translocation and inflammation.J Stud Alcohol Drugs2014; 75:347–357.
  • KelderT,StroeveJH,BijlsmaSet al.Correlation network analysis reveals relationships between diet-induced changes in human gut microbiota and metabolic health.Nutr Diabetes2014; 4:e122.
  • NwosuFC,AvershinaE,WilsonRet al.Gut microbiota in HIV infection: implication for disease progression and management.Gastroenterol Res Pract2014; 2014:803185.
  • GoriA,TincatiC,RizzardiniGet al.Early impairment of gut function and gut flora supporting a role for alteration of gastrointestinal mucosa in human immunodeficiency virus pathogenesis.J Clin Microbiol2008; 46:757–758.
  • EllisCL,MaZ-M,MannSKet al.Molecular characterization of stool microbiota in HIV-infected subjects by panbacterial and order-level 16S ribosomal DNA (rDNA) quantification and correlations with immune activation.J Acquir Immune Defic Syndr2011; 57:363–370.
  • MarnieP,JanetteB,DouglasB.Kell,EtheresiaPretorius.The dormant blood microbiome in chronic inflammatory diseases.FEMS Microbiol Rev2015; 39:567–591.

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