Advanced search
Publication Cover
Emerging Microbes & Infections Volume 7, 2018 - Issue 1
Submit an article Journal homepage
2,080
Views
21
CrossRef citations to date
0
Altmetric
Original Articles

Genomic analysis of a large set of currently—and historically—important human adenovirus pathogens

Ashrafali M. IsmailDepartment of Ophthalmology, Howe Laboratory, Massachusetts Eye and Ear InfirmaryHarvard Medical School02114BostonMAUSA
,
Tiange CuiBioinformatics and Computational Biology Program, School of Systems BiologyGeorge Mason University20110ManassasVAUSA
,
Kalpana DommarajuBioinformatics and Computational Biology Program, School of Systems BiologyGeorge Mason University20110ManassasVAUSA
,
Gurdeep SinghDepartment of Ophthalmology, Howe Laboratory, Massachusetts Eye and Ear InfirmaryHarvard Medical School02114BostonMAUSA
,
Shoaleh DehghanBioinformatics and Computational Biology Program, School of Systems BiologyGeorge Mason University20110ManassasVAUSA;Chemistry DepartmentAmerican University20016WashingtonDCUSA
,
Jason SetoBioinformatics and Computational Biology Program, School of Systems BiologyGeorge Mason University20110ManassasVAUSA
,
Susmita ShrivastavaJ. Craig Venter Institute20850RockvilleMDUSA
,
Nadia B. FedorovaJ. Craig Venter Institute20850RockvilleMDUSA
,
Neha GuptaJ. Craig Venter Institute20850RockvilleMDUSA
,
Timothy B. StockwellJ. Craig Venter Institute20850RockvilleMDUSA
,
Ramana MadupuJ. Craig Venter Institute20850RockvilleMDUSA
,
Albert HeimInstitut für Virologie, Medizinische Hochschule Hannover30625HannoverGermany
,
Adriana E. KajonLovelace Respiratory Research Institute87108AlbuquerqueNMUSA
,
Eric G. RomanowskiCharles T. Campbell Ophthalmic Microbiology Laboratory, Ear and Eye Institute, School of MedicineUniversity of Pittsburgh15213PittsburghPAUSA
,
Regis P. KowalskiCharles T. Campbell Ophthalmic Microbiology Laboratory, Ear and Eye Institute, School of MedicineUniversity of Pittsburgh15213PittsburghPAUSA
,
Jambulingam MalathiL & T Microbiology Research Center, Kamalnayan Bajaj Research Center, Sankara Nethralaya No. 41 College Road 600006ChennaiTamil NaduIndia
,
Kuzhanthai L. ThereseL & T Microbiology Research Center, Kamalnayan Bajaj Research Center, Sankara Nethralaya No. 41 College Road 600006ChennaiTamil NaduIndia
,
Hajib Narahari MadhavanL & T Microbiology Research Center, Kamalnayan Bajaj Research Center, Sankara Nethralaya No. 41 College Road 600006ChennaiTamil NaduIndia
,
Qiwei ZhangBiosafety Level-3 Laboratory, School of Public HealthSouthern Medical University510515GuangzhouChina
,
Leonardo J. FerreyraInstitute of Virology “J. M. Vanella”, Enfermera Gordillo Gómez s/n, Agencia 4Ciudad UniversitariaCP 5016CórdobaArgentina
,
Morris S. JonesUniversity of California Berkeley, School of Public Health94704BerkeleyCAUSA
,
Jaya RajaiyaDepartment of Ophthalmology, Howe Laboratory, Massachusetts Eye and Ear InfirmaryHarvard Medical School02114BostonMAUSA
,
David W. DyerDepartment of Microbiology and ImmunologyUniversity of Oklahoma Health Sciences Center73104Oklahoma CityOKUSA
,
James ChodoshDepartment of Ophthalmology, Howe Laboratory, Massachusetts Eye and Ear InfirmaryHarvard Medical School02114BostonMAUSACorrespondence[email protected]
&
Donald SetoBioinformatics and Computational Biology Program, School of Systems BiologyGeorge Mason University20110ManassasVAUSACorrespondence[email protected]
 show all
Pages 1-22 | Received 30 Sep 2017, Accepted 18 Nov 2017, Published online: 08 Dec 2018

References

  • SharpPASplit genes and RNA splicingCell199477 805 81510.1016/0092-8674(94)90130-9
  • StillmanBWThe replication of adenovirus DNA with purified proteinsCell1983357910.1016/0092-8674(83)90201-5
  • BurgertHGKvistSAn adenovirus type 2 glycoprotein blocks cell surface expression of human histocompatibility class I antigensCell19854198799710.1016/S0092-8674(85)80079-9
  • ReddyVSNatchiarSKStewartPLNemerowGRCrystal structure of human adenovirus at 3.5 A resolutionScience20103291071107510.1126/science.11872922929978
  • GrahamFLPrevecLAdenovirus-based expression vectors and recombinant vaccinesBiotechnology199220363390
  • LarsonCOronskyBScicinskiJGoing viral: a review of replication-selective oncolytic adenovirusesOncotarget20156199761998910.18632/oncotarget.51164652981
  • LionTAdenovirus infections in immunocompetent and immunocompromised patientsClin. Microbiol. Rev.20142744146210.1128/CMR.00116-134135893
  • KuhlmannIAchtenSRudolphRDoerflerWTumor induction by human adenovirus type 12 in hamsters: loss of the viral genome from adenovirus type 12-induced tumor cells is compatible with tumor formationEMBO J.198217986552999
  • YabeYSamperLBryanETaylorGTrentinJJOncogenic effect of human adenovirus type 12, in miceScience1964143464710.1126/science.143.3601.46
  • KajonAELarranagaCSuarezMWadellGAvendanoLFGenome type analysis of Chilean adenovirus strains isolated in a children’s hospital between 1988 and 1990J. Med. Virol.199442162110.1002/jmv.1890420104
  • KajonAEA new genome type of adenovirus 3 associated with severe lower acute respiratory infection in childrenJ. Med. Virol.199030737610.1002/jmv.1890300116
  • NielCMoraesMTMistchenkoASLeiteJPGomesSARestriction site mapping of four genome types of adenovirus types 3 and 7 isolated in South AmericaJ. Med. Virol.19913312312710.1002/jmv.1890330211
  • De JongJCWermenbolAGVerweij-UijterwaalMWAdenoviruses from human immunodeficiency virus-infected individuals, including two strains that represent new candidate serotypes Ad50 and Ad51 of species B1 and D, respectivelyJ. Clin. Microbiol.1999373940394585850
  • HageEGerd LiebertUBergsSGanzenmuellerTHeimAHuman mastadenovirus type 70: a novel, multiple recombinant species D mastadenovirus isolated from diarrhoeal faeces of a haematopoietic stem cell transplantation recipientJ. Gen. Virol.2015962734274210.1099/vir.0.000196
  • LinBWangZVoraGJBroad-spectrum respiratory tract pathogen identification using resequencing DNA microarraysGenome Res.20061652753510.1101/gr.43372061457032
  • SetoDChodoshJBristerJRJonesMSMembers of the Adenovirus Research C. Using the whole-genome sequence to characterize and name human adenovirusesJ. Virol.2011855701570210.1128/JVI.00354-113094998
  • SetoDJonesMSDyerDWChodoshJCharacterizing, typing, and naming human adenovirus type 55 in the era of whole genome dataJ. Clin. Virol.20135874174210.1016/j.jcv.2013.09.025
  • RobinsonCMSinghGHenquellCComputational analysis and identification of an emergent human adenovirus pathogen implicated in a respiratory fatalityVirology201140914114710.1016/j.virol.2010.10.020
  • RobinsonCMSinghGLeeJYMolecular evolution of human adenovirusesSci. Rep.2013310.1038/srep018123648800
  • RobinsonCMZhouXRajaiyaJPredicting the next eye pathogen: analysis of a novel adenovirusMBio20134e005950051210.1128/mBio.00595-123622935
  • WalshMPChintakuntlawarARobinsonCMEvidence of molecular evolution driven by recombination events influencing tropism in a novel human adenovirus that causes epidemic keratoconjunctivitisPLoS ONE20094e563510.1371/journal.pone.00056352685984
  • WalshMPComputational analysis identifies human adenovirus type 55 as a re-emergent acute respiratory disease pathogenJ. Clin. Microbiol.20104899199310.1128/JCM.01694-09
  • ZhouXRobinsonCMRajaiyaJAnalysis of human adenovirus type 19 associated with epidemic keratoconjunctivitis and its reclassification as adenovirus type 64Invest. Ophthalmol. Vis. Sci.2012532804281110.1167/iovs.12-96563367469
  • YoshitomiHSeraNGonzalezGHanaokaNFujimotoTFirst isolation of a new type of human adenovirus (genotype 79), species Human mastadenovirus B (B2) from sewage water in JapanJ. Med. Virol.2017891192120010.1002/jmv.24749
  • DehghanSSimian adenovirus type 35 has a recombinant genome comprising human and simian adenovirus sequences, which predicts its potential emergence as a human respiratory pathogenVirology201344726527310.1016/j.virol.2013.09.0093904862
  • WigandRPitfalls in the identification of adenovirusesJ. Virol. Methods19871616116910.1016/0166-0934(87)90001-2
  • KajonAELamsonDShudtMIdentification of a novel intertypic recombinant species D human adenovirus in a pediatric stem cell transplant recipientJ. Clin. Virol.20146149650210.1016/j.jcv.2014.09.0094276453
  • ZhaoSWanCKeCRe-emergent human adenovirus genome type 7d caused an acute respiratory disease outbreak in Southern China after a twenty-one year absenceSci. Rep.2014410.1038/srep073654258649
  • DjikengAHalpinRKuzmickasRDepasseJFeldblyumJSengamalayNAfonsoCZhangXAndersonNGGhedinESpiroDJViral genome sequencing by random priming methodsVirol. J.200895
  • LiKShrivastavaSBrownleyAAutomated degenerate PCR primer design for high-throughput sequencing improves efficiency of viral sequencingVirol. J.2012926110.1186/1743-422X-9-2613548747
  • WangSSundaramJPStockwellTBVIGOR extended to annotate genomes for additional 12 different virusesNucl. Acids Res.201240W18619210.1093/nar/gks5283394299
  • MadischIHarsteGPommerHHeimAPhylogenetic analysis of the main neutralization and hemagglutination determinants of all human adenovirus prototypes as a basis for molecular classification and taxonomyJ. Virol.200579152651527610.1128/JVI.79.24.15265-15276.20051316018
  • LoleKSBollingerRCParanjapeRSFull-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombinationJ. Virol.199973152160103818
  • SimmondsPAdamsMJBenkoMConsensus statement: Virus taxonomy in the age of metagenomicsNat. Rev. Microbiol.20171516116810.1038/nrmicro.2016.177
  • SetoJWalshMPMetzgarDSetoDComputational analysis of adenovirus serotype 5 (HAdV-C5) from an HAdV coinfection shows genome stability after 45 years of circulationVirology201040418018610.1016/j.virol.2010.05.010
  • MahadevanPSetoJTibbettsCSetoDNatural variants of human adenovirus type 3 provide evidence for relative genome stability across time and geographic spaceVirology201039711311810.1016/j.virol.2009.10.052
  • Crawford-MikszaLSchnurrDPAnalysis of 15 adenovirus hexon proteins reveals the location and structure of seven hypervariable regions containing serotype-specific residuesJ. Virol.19967018361844190011
  • WalshMPSetoJLiuEBComputational analysis of two species C human adenoviruses provides evidence of a novel virusJ. Clin. Microbiol.2011493482349010.1128/JCM.00156-113187342
  • YuanXQuZWuXMolecular modeling and epitopes mapping of human adenovirus type 3 hexon proteinVaccine2009275103511010.1016/j.vaccine.2009.06.041
  • LordRParsonsMKirbyIAnalysis of the interaction between RGD-expressing adenovirus type 5 fiber knob domains and alphavbeta3 integrin reveals distinct binding profiles and intracellular traffickingJ. Gen. Virol.2006872497250510.1099/vir.0.81620-0
  • LiEStupackDKlemkeRChereshDANemerowGRAdenovirus endocytosis via alpha(v) integrins requires phosphoinositide-3-OH kinaseJ. Virol.19987220552061109499
  • IsmailAMSelection pressure in the human adenovirus fiber knob drives cell specificity in epidemic keratoconjunctivitisJ. Virol.2016909598960710.1128/JVI.01010-165068513
  • WigandRSehnNHierholzerJCde JongJCAdrianTImmunological and biochemical characterization of human adenoviruses from subgenus B. I. Antigenic relationshipsArch. Virol.198584637810.1007/BF01310554
  • EngelmannIMadischIPommerHHeimAAn outbreak of epidemic keratoconjunctivitis caused by a new intermediate adenovirus 22/H8 identified by molecular typingClin. Infect. Dis.200643e646610.1086/507533
  • BellSDJr.RotaTRMcCombDEAdenoviruses isolated from Saudi Arabia. III. Six new serotypesAm. J. Trop. Med. Hyg.1960952352610.4269/ajtmh.1960.9.523
  • KanekoHAokiKOhnoSComplete genome analysis of a novel intertypic recombinant human adenovirus causing epidemic keratoconjunctivitis in JapanJ. Clin. Microbiol.20114948449010.1128/JCM.01044-103043511
  • CarrMJKajonAELuXDeaths associated with human adenovirus-14p1 infections, Europe, 2009-2010Emerg. Infect. Dis.2011171402140810.3201/1708.1017603381588
  • KajonAELuXErdmanDDMolecular epidemiology and brief history of emerging adenovirus 14-associated respiratory disease in the United StatesJ. Infect. Dis.20102029310310.1086/653083
  • ZhangQGenome sequence of the first human adenovirus type 14 isolated in ChinaJ. Virol.2012867019702010.1128/JVI.00814-123393531
  • RobinsonCMRajaiyaJWalshMPComputational analysis of human adenovirus type 22 provides evidence for recombination among species D human adenoviruses in the penton base geneJ. Virol.2009838980898510.1128/JVI.00786-092738150
  • WuEFlexibility of the adenovirus fiber is required for efficient receptor interactionJ. Virol.2003777225723510.1128/JVI.77.13.7225-7235.2003164825
  • HuangSReddyVDasguptaNNemerowGRA single amino acid in the adenovirus type 37 fiber confers binding to human conjunctival cellsJ. Virol.19997327982802104037

Related research

People also read lists articles that other readers of this article have read.

Recommended articles lists articles that we recommend and is powered by our AI driven recommendation engine.

Cited by lists all citing articles based on Crossref citations.
Articles with the Crossref icon will open in a new tab.