References
- LindquistLVapalahtiOTick-borne encephalitisLancet2008371 1861 187110.1016/S0140-6736(08)60800-4
- GritsunTSLashkevichVAGouldEATick-borne encephalitisAntivir. Res.20035712914610.1016/S0166-3542(02)00206-1
- BogovicPStrleFTick-borne encephalitis: a review of epidemiology, clinical characteristics, and managementWorld J. Clin. Cases2015343044110.12998/wjcc.v3.i5.4304419106
- ChambersTJFlavivirus genome organization, expression, and replicationAnnu. Rev. Microbiol.19904464968810.1146/annurev.mi.44.100190.003245
- EckerMSequence analysis and genetic classification of tick-borne encephalitis viruses from Europe and AsiaJ. Gen. Virol.19998017918510.1099/0022-1317-80-1-179
- GrardGGenetic characterization of tick-borne flaviviruses: new insights into evolution, pathogenetic determinants and taxonomyVirology2007361809210.1016/j.virol.2006.09.015
- KovalevSYMukhachevaTAReconsidering the classification of tick-borne encephalitis virus within the Siberian subtype gives new insights into its evolutionary historyInfect. Genet. Evol.20175515916510.1016/j.meegid.2017.09.014
- DeminaTVGenotyping and characterization of the geographical distribution of tick-borne encephalitis virus variants with a set of molecular probesJ. Med. Virol.20108296597610.1002/jmv.21765
- LiuYJEpidemiological characteristics of tick borne encephalitis natural foci in JilinBull. Acad. Mil. Med. Sci. [Zhongguo Ren. Min. Jie Fang. Jun. Jun. Shi Yi Xue Ke Xue Yuan Yuan Kan.]19793109120
- YinDMLiuRZReview on the control of forest encephalitis in the forest areas of north-east ChinaChin. J. Epidemiol. [Zhonghua Liu Xing Bing. Xue Za Zhi]200021387389
- LuZBrokerMLiangGTick-borne encephalitis in mainland ChinaVector Borne Zoonotic Dis.2008871372010.1089/vbz.2008.0028
- SunRXMapping the distribution of tick-borne encephalitis in mainland ChinaTicks Tick Borne Dis.2017863163910.1016/j.ttbdis.2017.04.009
- LiuRDetection of the Siberian Tick-borne Encephalitis Virus in the Xinjiang Uygur Autonomous Region, northwestern ChinaChin. J. Virol. [Bing. du xue bao]2016322631
- ZhangGLInvestigation on the endemic foci of new emerged tick-borne encephalitis in Charles Hilary, XinjiangChin. J. Epidemiol. [Zhonghua liu xing Bing. xue za zhi]201334438442
- HeinzFXEmergence of tick-borne encephalitis in new endemic areas in Austria: 42 years of surveillanceEur. Surveill.20152091610.2807/1560-7917.ES2015.20.13.21077
- YuJMA novel hepatovirus identified in wild woodchuck Marmota himalayanaSci. Rep.2016610.1038/srep223614770319
- GritsunTSHolmesECGouldEAAnalysis of flavivirus envelope proteins reveals variable domains that reflect their antigenicity and may determine their pathogenesisVirus Res.19953530732110.1016/0168-1702(94)00090-Y
- ReyFAThe envelope glycoprotein from tick-borne encephalitis virus at 2 A resolutionNature199537529129810.1038/375291a0
- MandlCWAdaptation of tick-borne encephalitis virus to BHK-21 cells results in the formation of multiple heparan sulfate binding sites in the envelope protein and attenuation in vivoJ. Virol.2001755627563710.1128/JVI.75.12.5627-5637.2001114275
- BelikovSIThe relationship between the structure of the tick-borne encephalitis virus strains and their pathogenic propertiesPLoS One20149e9494610.1371/journal.pone.00949463989262
- LeonovaGNComprehensive assessment of the genetics and virulence of tick-borne encephalitis virus strains isolated from patients with inapparent and clinical forms of the infection in the Russian Far EastVirology2013443899810.1016/j.virol.2013.04.029
- ChuMCO’RourkeEJTrentDWGenetic relatedness among structural protein genes of dengue 1 virus strainsJ. Gen. Virol.1989701701171210.1099/0022-1317-70-7-1701
- NiHBarrettADNucleotide and deduced amino acid sequence of the structural protein genes of Japanese encephalitis viruses from different geographical locationsJ. Gen. Virol.19957640140710.1099/0022-1317-76-2-401
- LepiniecLGeographic distribution and evolution of yellow fever viruses based on direct sequencing of genomic cDNA fragmentsJ. Gen. Virol.19947541742310.1099/0022-1317-75-2-417
- LewisJAPhylogenetic relationships of dengue-2 virusesVirology199319721622410.1006/viro.1993.1582
- HeinzeDMGouldEAForresterNLRevisiting the clinal concept of evolution and dispersal for the tick-borne flaviviruses by using phylogenetic and biogeographic analysesJ. Virol.2012868663867110.1128/JVI.01013-123421761
- QianQMapping risk of plague in Qinghai-Tibetan Plateau, ChinaBmc Infect. Dis.20141410.1186/1471-2334-14-3824227279
- YangYSInvestigation on kinds and nature geographic distribution of ticks in Qinghai provinceChin. J. Hyg. Equip. [Zhonghua Wei Sheng Sha Chong Yao Xie]200814201203
- GrabherrMGFull-length transcriptome assembly from RNA-Seq data without a reference genomeNat. Biotechnol.20112964465210.1038/nbt.18833571712
- LiCXUnprecedented genomic diversity of RNA viruses in arthropods reveals the ancestry of negative-sense RNA viruseseLife20154e053784384744
- DrummondAJRambautABEAST: Bayesian evolutionary analysis by sampling treesBmc Evol. Biol.2007721410.1186/1471-2148-7-2142247476
- PosadaDjModelTest: phylogenetic model averagingMol. Biol. Evol.2008251253125610.1093/molbev/msn083