Search in:

Emerging Microbes & Infections Volume 7, 2018 - Issue 1

Submit an article Journal homepage

Open access

1,120

Views

CrossRef citations to date

Altmetric

Original Articles

Discovery of Enterovirus A71-like nonstructural genomes in recent circulating viruses of the Enterovirus A species

Kuo-Ming LeeResearch Center for Emerging Viral Infections, College of MedicineChang Gung UniversityTaoyuanTaiwan

Yu-Nong GongResearch Center for Emerging Viral Infections, College of MedicineChang Gung UniversityTaoyuanTaiwan

Tzu-Hsuan HsiehDepartment of Medical Biotechnology and Laboratory Science, College of MedicineChang Gung UniversityTaoyuanTaiwan

Andrew WoodmanDepartment of Biochemistry and Molecular BiologyThe Pennsylvania State University16802University ParkPAUSA

http://orcid.org/0000-0001-7757-5492

Nynke H. DekkerDepartment of Bionanoscience, Kavli Institute of NanoscienceDelft University of Technology Van der Maasweg 9 2629 HZDelftThe Netherlands

Craig E. CameronDepartment of Biochemistry and Molecular BiologyThe Pennsylvania State University16802University ParkPAUSA

Shin-Ru ShihResearch Center for Emerging Viral Infections, College of MedicineChang Gung UniversityTaoyuanTaiwan;Department of Medical Biotechnology and Laboratory Science, College of MedicineChang Gung UniversityTaoyuanTaiwan;Department of Laboratory MedicineLinkou Chang Gung Memorial HospitalTaoyuanTaiwan;Research Center for Chinese Herbal Medicine, Research Center for Food and Cosmetic Safety, and Graduate Institute of Health Industry Technology, College of Human EcologyChang Gung University of Science and TechnologyTaoyuanTaiwanCorrespondence[email protected]

show all

Pages 1-14 | Received 13 Feb 2018, Accepted 29 Apr 2018, Published online: 21 Jun 2018

Cite this article
https://doi.org/10.1038/s41426-018-0107-0
CrossMark

Full Article
Figures & data
References
Supplemental
Citations
Metrics
Licensing
Reprints & Permissions
View PDF PDF

References

SolomonTVirology, epidemiology, pathogenesis, and control of enterovirus 71Lancet Infect. Dis.201010 778 79010.1016/S1473-3099(10)70194-8
PubMed Web of Science ®Google Scholar
HoMAn epidemic of enterovirus 71 infection in Taiwan. Taiwan Enterovirus Epidemic Working GroupN. Engl. J. Med.199934192993510.1056/NEJM199909233411301
PubMed Web of Science ®Google Scholar
ChangLYEnterovirus 71 in TaiwanPediatr. Neonatol.20084910311210.1016/S1875-9572(08)60023-6
PubMedGoogle Scholar
BessaudMMolecular comparison and evolutionary analyses of VP1 nucleotide sequences of new African human enterovirus 71 isolates reveal a wide genetic diversityPLoS ONE20149e9062410.1371/journal.pone.00906243944068
PubMed Web of Science ®Google Scholar
BrownBAObersteMSAlexanderJPJrKennettMLPallanschMAMolecular epidemiology and evolution of enterovirus 71 strains isolated from 1970 to 1998J. Virol.19997399699975113047
PubMed Web of Science ®Google Scholar
SaxenaVKSaneSNadkarniSSSharmaDKDeshpandeJMGenetic diversity of enterovirus A71, IndiaEmerg. Infect. Dis.20152112312610.3201/eid2101.1407434285237
PubMed Web of Science ®Google Scholar
TeeKKEvolutionary genetics of human enterovirus 71: origin, population dynamics, natural selection, and seasonal periodicity of the VP1 geneJ. Virol.2010843339335010.1128/JVI.01019-092838098
PubMed Web of Science ®Google Scholar
McMinnPCRecent advances in the molecular epidemiology and control of human enterovirus 71 infectionCurr. Opin. Virol.2012219920510.1016/j.coviro.2012.02.009
PubMed Web of Science ®Google Scholar
ChristianKAWhat we are watching–five top global infectious disease threats, 2012: a perspective from CDC’s Global Disease Detection Operations CenterEmerg. Health Threats J.201362063210.3402/ehtj.v6i0.20632
PubMedGoogle Scholar
ChenXAnalysis of recombination and natural selection in human enterovirus 71Virology201039825126110.1016/j.virol.2009.12.007
PubMed Web of Science ®Google Scholar
MaoQWangYBianLXuMLiangZEV-A71 vaccine licensure: a first step for multivalent enterovirus vaccine to control HFMD and other severe diseasesEmerg. Microbes Infect.2016510.1038/emi.2016.735141264
PubMed Web of Science ®Google Scholar
Wang, S. F. An epidemiological analysis of enterovirus 71: Taiwan, 1998–2004. Taiwan Epidemiol. Bull.21, 125–153 (2005).
Google Scholar
HuangSWReemergence of enterovirus 71 in 2008 in taiwan: dynamics of genetic and antigenic evolution from 1998 to 2008J. Clin. Microbiol.2009473653366210.1128/JCM.00630-092772620
PubMed Web of Science ®Google Scholar
YipCCEmergence of enterovirus 71 “double-recombinant” strains belonging to a novel genotype D originating from southern China: first evidence for combination of intratypic and intertypic recombination events in EV71Arch. Virol.20101551413142410.1007/s00705-010-0722-0
PubMed Web of Science ®Google Scholar
Simon-LoriereEHolmesECWhy do RNA viruses recombine?Nat. Rev. Microbiol.2011961762610.1038/nrmicro26143324781
PubMed Web of Science ®Google Scholar
KyriakopoulouZPliakaVAmoutziasGDMarkoulatosPRecombination among human non-polio enteroviruses: implications for epidemiology and evolutionVirus Genes20155017718810.1007/s11262-014-1152-y
PubMed Web of Science ®Google Scholar
PosadaDCrandallKAHolmesECRecombination in evolutionary genomicsAnnu. Rev. Genet.200236759710.1146/annurev.genet.36.040202.111115
PubMed Web of Science ®Google Scholar
Yoke-FunCAbuBakarSPhylogenetic evidence for inter-typic recombination in the emergence of human enterovirus 71 subgenotypesBMC Microbiol.200667410.1186/1471-2180-6-741569848
PubMed Web of Science ®Google Scholar
ChanYFComparative genetic analysis of VP4, VP1 and 3D gene regions of enterovirus 71 and coxsackievirus A16 circulating in Malaysia between 1997-2008Trop. Biomed.201229451466
PubMed Web of Science ®Google Scholar
BiekRPybusOGLloyd-SmithJODidelotXMeasurably evolving pathogens in the genomic eraTrends Ecol. Evol.20153030631310.1016/j.tree.2015.03.0094457702
PubMed Web of Science ®Google Scholar
ChanYFAbuBakarSHuman enterovirus 71 subgenotype B3 lacks coxsackievirus A16-like neurovirulence in mice infectionVirol. J.200527410.1186/1743-422X-2-741215528
PubMed Web of Science ®Google Scholar
SimmondsPWelchJFrequency and dynamics of recombination within different species of human enterovirusesJ. Virol.20068048349310.1128/JVI.80.1.483-493.20061317522
PubMed Web of Science ®Google Scholar
HuangSWMutations in the non-structural protein region contribute to intra-genotypic evolution of enterovirus 71J. Biomed. Sci.2014213310.1186/1423-0127-21-334021180
PubMed Web of Science ®Google Scholar
GuoWPFourteen types of co-circulating recombinant enterovirus were associated with hand, foot, and mouth disease in children from Wenzhou, ChinaJ. Clin. Virol.201570293810.1016/j.jcv.2015.06.093
PubMed Web of Science ®Google Scholar
BottcherSObermeierPENeubauerKDiedrichSLaboratory Network for Enterovirus, D.Recombinant enterovirus A71 subgenogroup C1 strains, Germany, 2015Emerg. Infect. Dis.2016221843184610.3201/eid2210.1603575038430
PubMed Web of Science ®Google Scholar
Midgley, S. E. et al. Co-circulation of multiple subtypes of enterovirus A71 (EV-A71) genotype C, including novel recombinants characterised by use of whole genome sequencing (WGS), Denmark 2016. Euro. Surveill. 22. 10.2807/1560-7917.ES.2017.22.26.30565 (2017).
Google Scholar
FischerTKEmergence of enterovirus 71 C4a in Denmark, 2009 to 2013Eur. Surveill.2014192091110.2807/1560-7917.ES2014.19.38.20911
PubMedGoogle Scholar
HuYFComplete genome analysis of coxsackievirus A2, A4, A5, and A10 strains isolated from hand, foot, and mouth disease patients in China revealing frequent recombination of human enterovirus AJ. Clin. Microbiol.2011492426243410.1128/JCM.00007-113147834
PubMed Web of Science ®Google Scholar
PaulAVWimmerEInitiation of protein-primed picornavirus RNA synthesisVirus Res.2015206122610.1016/j.virusres.2014.12.0284476921
PubMed Web of Science ®Google Scholar
CabrerizoMMolecular epidemiology of enterovirus 71, coxsackievirus A16 and A6 associated with hand, foot and mouth disease in SpainClin. Microbiol. Infect.201420O150O15610.1111/1469-0691.12361
PubMed Web of Science ®Google Scholar
ZhangYComplete genome analysis of the C4 subgenotype strains of enterovirus 71: predominant recombination C4 viruses persistently circulating in China for 14 yearsPLoS ONE20138e5634110.1371/journal.pone.00563413575343
PubMed Web of Science ®Google Scholar
GongYNA next-generation sequencing data analysis pipeline for detecting unknown pathogens from mixed clinical samples and revealing their genetic diversityPLoS ONE201611e015149510.1371/journal.pone.01514954795770
PubMed Web of Science ®Google Scholar
LoleKSFull-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombinationJ. Virol.199973152160103818
PubMed Web of Science ®Google Scholar
HasegawaMKishinoHYanoTDating of the human-ape splitting by a molecular clock of mitochondrial DNAJ. Mol. Evol.19852216017410.1007/BF02101694
PubMed Web of Science ®Google Scholar
KumarSStecherGTamuraKMEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for bigger datasetsMol. Biol. Evol.2016331870187410.1093/molbev/msw054
PubMed Web of Science ®Google Scholar
DrummondAJRambautABEAST: Bayesian evolutionary analysis by sampling treesBMC Evol. Biol.2007721410.1186/1471-2148-7-2142247476
PubMed Web of Science ®Google Scholar
SuchardMARambautAMany-core algorithms for statistical phylogeneticsBioinformatics2009251370137610.1093/bioinformatics/btp2442682525
PubMed Web of Science ®Google Scholar

Share icon
Back to Top

Related research

People also read lists articles that other readers of this article have read.

Recommended articles lists articles that we recommend and is powered by our AI driven recommendation engine.

Cited by lists all citing articles based on Crossref citations.
Articles with the Crossref icon will open in a new tab.

People also read
Recommended articles
Cited by

To cite this article:

Reference style: APA Chicago Harvard

Citation copied to clipboard

Reference styles above use APA (6th edition), Chicago (16th edition) & Harvard (10th edition)

Download citation

Download a citation file in RIS format that can be imported by citation management software including EndNote, ProCite, RefWorks and Reference Manager.

Choose format: RIS BibTex RefWorks Direct Export

Choose options: Citation Citation & abstract Citation & references

Discovery of Enterovirus A71-like nonstructural genomes in recent circulating viruses of the Enterovirus A species

References

Information for

Open access

Opportunities

Help and information

Your download is now in progress and you may close this window

Login or register to access this feature

Discovery of Enterovirus A71-like nonstructural genomes in recent circulating viruses of the Enterovirus A species

References

Related research

To cite this article:

Download citation

Information for

Open access

Opportunities

Help and information

Keep up to date