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Emerging Microbes & Infections Volume 7, 2018 - Issue 1
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Original Articles

The molecular basis of antigenic variation among A(H9N2) avian influenza viruses

Thomas P. PeacockAvian Influenza GroupThe Pirbright Institute, PirbrightGU24 0NFWokingUK;Department of VirologyImperial CollegeW2 1NYLondonUKORCID Iconhttp://orcid.org/0000-0001-7077-2928
ORCID Icon,
William T. HarveyBoyd Orr Centre for Population and Ecosystem Health, Institute of Biodiversity, Animal Health and Comparative Medicine, College of MedicalVeterinary and Life Sciences, University of GlasgowG12 8QQGlasgowUK
,
Jean-Remy SadeyenAvian Influenza GroupThe Pirbright Institute, PirbrightGU24 0NFWokingUK
,
Richard ReeveBoyd Orr Centre for Population and Ecosystem Health, Institute of Biodiversity, Animal Health and Comparative Medicine, College of MedicalVeterinary and Life Sciences, University of GlasgowG12 8QQGlasgowUKCorrespondence[email protected]
ORCID Iconhttp://orcid.org/0000-0003-2589-8091
ORCID Icon &
Munir IqbalAvian Influenza GroupThe Pirbright Institute, PirbrightGU24 0NFWokingUK
Pages 1-12 | Received 02 Jul 2018, Accepted 08 Oct 2018, Published online: 07 Nov 2018

References

  • JakhesaraSJBhattVDPatelNVPrajapatiKSJoshiCGIsolation and characterization of H9N2 influenza virus isolates from poultry respiratory disease outbreak+201434004788
  • LeeYNIsolation and characterization of a novel H9N2 influenza virus in Korean native chicken farmAvian Dis.201155 724 72710.1637/9774-050911-Case.1
  • PuJEvolution of the H9N2 influenza genotype that facilitated the genesis of the novel H7N9 virusProc. Natl. Acad. Sci. USA201511254855310.1073/pnas.1422456112
  • ZecchinBiancaMinoungouGermaineFusaroAliceMoctarSidiOuedraogo-KaboréAnneSchivoAlessiaSalviatoAnnalisaMarcianoSabrinaMonneIsabellaInfluenza A(H9N2) Virus, Burkina FasoEmerging Infectious Diseases201723122118211910.3201/eid2312.171294
  • ProMED-mail. PRO/AH/EDR > Avian influenza (58): Ghana (BA) poultry, HPAI H9N2 not, LPAI H9N2, OIE ProMED-mail. Archive Number: 20180411.5739806 (2018).
  • Vorotnikov, V. Low-pathogenic AI strikes Russian Far East. Global Meat News.com.<https://www.globalmeatnews.com/Article/2018/05/25/Russia-to-cull-chickens-to-prevent-avian-flu-spreading> (2018).
  • News Desk. Ministry, FAO warn farmers of bird flu. The Jakarta Post.<http://www.thejakartapost.com/news/2018/07/06/ministry-fao-warn-farmers-of-bird-flu.html> (2018).
  • SorrellEMWanHArayaYSongHPerezDRMinimal molecular constraints for respiratory droplet transmission of an avian-human H9N2 influenza A virusProc. Natl. Acad. Sci. USA20091067565757010.1073/pnas.0900877106
  • LiXGenetics, receptor binding property, and transmissibility in mammals of naturally isolated H9N2 Avian Influenza virusesPLoS. Pathog.201410e100450810.1371/journal.ppat.1004508
  • PeirisMHuman infection with influenza H9N2Lancet199935491691710.1016/S0140-6736(99)03311-5
  • ShenYong-YiKeChang-WenLiQianYuanRun-YuXiangDanJiaWei-XinYuYun-DiLiuLuHuangCanQiWen-BaoSikkemaReinaWuJieKoopmansMarionLiaoMingNovel Reassortant Avian Influenza A(H5N6) Viruses in Humans, Guangdong, China, 2015Emerging Infectious Diseases20162281507150910.3201/eid2208.160146
  • ZhangPCharacterization of H9N2 influenza viruses isolated from vaccinated flocks in an integrated broiler chicken operation in eastern China during a 5 year period (1998-2002)J. Gen. Virol.2008893102311210.1099/vir.0.2008/005652-0
  • Banet-NoachCH9N2 influenza viruses from Israeli poultry: a five-year outbreakAvian Dis.20075129029610.1637/7590-040206R1.1
  • ParkKJRapid evolution of low-pathogenic H9N2 avian influenza viruses following poultry vaccination programmesJ. Gen. Virol.201192365010.1099/vir.0.024992-0
  • WeiYAntigenic evolution of H9N2 chicken influenza viruses isolated in China during 2009-2013 and selection of a candidate vaccine strain with broad cross-reactivityVet. Microbiol.20161821710.1016/j.vetmic.2015.10.031
  • ChambersTMKawaokaYWebsterRGProtection of chickens from lethal influenza infection by vaccinia-expressed hemagglutininVirology198816741442110.1016/S0042-6822(88)90103-1
  • HarveyWTIdentification of low- and high-impact hemagglutinin amino acid substitutions that drive antigenic drift of influenza A(H1N1) virusesPLoS. Pathog.201612e100552610.1371/journal.ppat.1005526
  • KoelBFSubstitutions near the receptor binding site determine major antigenic change during influenza virus evolutionScience201334297697910.1126/science.1244730
  • HensleySEHemagglutinin receptor binding avidity drives influenza A virus antigenic driftScience200932673473610.1126/science.1178258
  • AbeYEffect of the addition of oligosaccharides on the biological activities and antigenicity of influenza A/H3N2 virus hemagglutininJ. Virol.2004789605961110.1128/JVI.78.18.9605-9611.2004
  • DasSRFitness costs limit influenza A virus hemagglutinin glycosylation as an immune evasion strategyProc. Natl. Acad. Sci. USA2011108E1417E142210.1073/pnas.1108754108
  • LindermanSLPotential antigenic explanation for atypical H1N1 infections among middle-aged adults during the 2013-2014 influenza seasonProc. Natl. Acad. Sci. USA2014111157981580310.1073/pnas.1409171111
  • KosikIInfluenza A virus hemagglutinin glycosylation compensates for antibody escape fitness costsPLoS. Pathog.201814e100679610.1371/journal.ppat.1006796
  • LiYSingle hemagglutinin mutations that alter both antigenicity and receptor binding avidity influence influenza virus antigenic clusteringJ. Virol.2013879904991010.1128/JVI.01023-13
  • PeacockTAntigenic mapping of an H9N2 avian influenza virus reveals two discrete antigenic sites and a novel mechanism of immune escapeSci. Rep.2016610.1038/srep18745
  • OkamatsuMSakodaYKishidaNIsodaNKidaHAntigenic structure of the hemagglutinin of H9N2 influenza virusesArch. Virol.20081532189219510.1007/s00705-008-0243-2
  • KaverinNVStructural differences among hemagglutinins of influenza A virus subtypes are reflected in their antigenic architecture: analysis of H9 escape mutantsJ. Virol.20047824024910.1128/JVI.78.1.240-249.2004
  • WanZAntigenic mapping of the hemagglutinin of an H9N2 avian influenza virus reveals novel critical amino acid positions in antigenic sitesJ. Virol.2014883898390110.1128/JVI.03440-13
  • ZhuYIdentification and characterization of a novel antigenic epitope in the hemagglutinin of the escape mutants of H9N2 avian influenza virusesVet. Microbiol.201517814414910.1016/j.vetmic.2015.04.012
  • PingJSingle-amino-acid mutation in the HA alters the recognition of H9N2 influenza virus by a monoclonal antibodyBiochem. Biophys. Res. Commun.200837116817110.1016/j.bbrc.2008.04.045
  • WanHPerezDRAmino acid 226 in the hemagglutinin of H9N2 influenza viruses determines cell tropism and replication in human airway epithelial cellsJ. Virol.2007815181519110.1128/JVI.02827-06
  • PeacockTPVariability in H9N2 haemagglutinin receptor-binding preference and the pH of fusionEmerg. Microbes Infect.20176e1110.1038/emi.2016.139
  • SangXAdaptation of H9N2 AIV in guinea pigs enables efficient transmission by direct contact and inefficient transmission by respiratory dropletsSci. Rep.2015510.1038/srep15928
  • SpiegelhalterDJBestNGCarlinBPVan Der LindeABayesian measures of model complexity and fitJ. R. Stat. Soc. Ser. B (Stat. Methodol.)20026458363910.1111/1467-9868.00353
  • TengQiaoyangXuDaweiShenWeixiaLiuQinfangRongGuangyuLiXuesongYanLipingYangJianmeiChenHongjunYuHaiMaWenjunLiZejunA Single Mutation at Position 190 in Hemagglutinin Enhances Binding Affinity for Human Type Sialic Acid Receptor and Replication of H9N2 Avian Influenza Virus in MiceJournal of Virology201690219806982510.1128/JVI.01141-16
  • ReeveRTracking the antigenic evolution of foot-and-mouth disease virusPLoS ONE201611e015936010.1371/journal.pone.0159360
  • HoffmannENeumannGKawaokaYHobomGWebsterRGA DNA transfection system for generation of influenza A virus from eight plasmidsProc. Natl. Acad. Sci. USA2000976108611310.1073/pnas.100133697
  • Peacock, T. P. et al. Immune escape variants of H9N2 influenza viruses containing deletions at the haemagglutinin receptor binding site retain fitness in vivo and display enhanced zoonotic characteristics. J. Virol. JVI.00218-17 (2017).
  • Webster, R., Cox, N. & Stöhr, K. WHO Manual on Animal Influenza Diagnosis and Surveillance. WHO Global Influenza Programme (2002).
  • Just Another Gibbs Sampler v3.3.0 (JAGS): a program for analysis of Bayesian graphical models using Gibbs sampling. (2012).
  • DenwoodMrunjags: Interface utilities, model templates, parallel computing methods and additional distributions for MCMC models in JAGSJ. Stat. Softw.20167112510.18637/jss.v071.i09
  • DrummondAJSuchardMAXieDRambautABayesian phylogenetics with BEAUti and the BEAST 1.7Mol. Biol. Evol.2012291969197310.1093/molbev/mss075
  • SuchardMAWeissRESinsheimerJSBayesian selection of continuous-time Markov chain evolutionary modelsMol. Biol. Evol.2001181001101310.1093/oxfordjournals.molbev.a003872
  • DrummondAJHoSYPhillipsMJRambautARelaxed phylogenetics and dating with confidencePLoS Biol.20064e8810.1371/journal.pbio.0040088
  • DrummondAJRambautAShapiroBPybusOGBayesian coalescent inference of past population dynamics from molecular sequencesMol. Biol. Evol.2005221185119210.1093/molbev/msi103
  • YuGSmithDKZhuHGuanYLamTTYggtree: an r package for visualization and annotation of phylogenetic trees with their covariates and other associated dataMethods Ecol. Evol.20178283610.1111/2041-210X.12628
  • lme4: linear mixed-effects models using ‘Eigen’ and S4. (2016).
  • R: a language and environment for statistical computing. Foundation for Statistical Computing (Vienna, Austria, 2016).
  • ReeveRSequence-based prediction for vaccine strain selection and identification of antigenic variability in foot-and-mouth disease virusPLoS. Comput. Biol.20106e100102710.1371/journal.pcbi.1001027
  • Russell, S. & Norvig, P. in Artificial intelligence: A modern approach. (Pearson Education Limited, 1995).
  • HolmSA simple sequentially rejective multiple test procedureScand. J. Stat.197966570
  • The PyMOL Molecular Graphics System, Version 1.3r1 (2010).
  • HaYStevensDJSkehelJJWileyDCX-ray structures of H5 avian and H9 swine influenza virus hemagglutinins bound to avian and human receptor analogsProc. Natl. Acad. Sci. USA200198111811118610.1073/pnas.201401198

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