References
- Machiulskiene V, Campus G, Carvalho JC, et al. Terminology of dental caries and dental caries management: consensus report of a workshop organized by ORCA and cariology research group of IADR. Caries Res. 2020;54(1):7–14.
- Tanner ACR, Kressirer CA, Rothmiller S, et al. The caries microbiome: implications for reversing dysbiosis. Adv Dent Res. 2018;29(1):78–85.
- Aas JA, Griffen AL, Dardis SR, et al. Bacteria of dental caries in primary and permanent teeth in children and young adults. J Clin Microbiol. 2008;46(4):1407–1417.
- Xu H, Hao W, Zhou Q, et al. Plaque bacterial microbiome diversity in children younger than 30 months with or without caries prior to eruption of second primary molars. PLOS One. 2014;9(2):e89269.
- Rôças IN, Alves FR, Rachid CT, et al. Microbiome of deep dentinal caries lesions in teeth with symptomatic irreversible pulpitis. PLOS One. 2016;11(5):e0154653.
- Kazemtabrizi A, Haddadi A, Shavandi M, et al. Metagenomic investigation of bacteria associated with dental lesions: a cross-sectional study. Med Oral Patol Oral Cir Bucal. 2020;25(2):e240–e251.
- Cogulu D, Uzel A, Oncag O, et al. PCR-based identification of selected pathogens associated with endodontic infections in deciduous and permanent teeth. Oral Surg Oral Med Oral Pathol Oral Radiol Endod. 2008;106(3):443–449.
- Cancio V, Carvalho Ferreira DD, Cavalcante FS, et al. Can the Enterococcus faecalis identified in the root canals of primary teeth be a cause of failure of endodontic treatment? Acta Odontol Scand. 2017;75(6):423–428.
- Kouidhi B, Zmantar T, Mahdouani K, et al. Antibiotic resistance and adhesion properties of oral Enterococci associated to dental caries. BMC Microbiol. 2011;11(1):155.
- Petersen PE, Baez RJ, World Health Organization. Oral health surveys: basic methods. 5th ed. Geneva: WHO Library Cataloguing-in-Publication Data; 2013. Chapter 3.2, Post-survey assistance; p. 73–76.
- Kidd EAM, Joyston-Bechal S, Beighton D. Microbiological validation of assessments of caries activity during cavity preparation. Caries Res. 1993;27(5):402–408.
- Ornellas PO, Antunes LS, Motta PC, et al. Antimicrobial photodynamic therapy as an adjunct for clinical partial removal of deciduous carious tissue: a minimally invasive approach. Photochem Photobiol. 2018;94(6):1240–1248.
- MacFaddin JF. Biochemical tests for identification of medical bacteria. Philadelphia (PA): Williams and Wilkins; 1977.
- Siqueira JF Jr., Rôças IN. Polymerase chain reaction-based analysis of microorganisms associated with failed endodontic treatment. Oral Surg Oral Med Oral Pathol Oral Radiol Endod. 2004;97(1):85–94.
- Dec M, Puchalski A, Urban-Chmiel R, et al. 16S-ARDRA and MALDI-TOF mass spectrometry as tools for identification of Lactobacillus bacteria isolated from poultry. BMC Microbiol. 2016;16(1):105.
- Valdez RMA, Dos Santos VR, Caiaffa KS, et al. Comparative in vitro investigation of the cariogenic potential of bifidobacteria. Arch Oral Biol. 2016;71:97–103.
- Stepanović S, Vuković D, Dakić I, et al. A modified microtiter-plate test for quantification of staphylococcal biofilm formation. J Microbiol Methods. 2000;40(2):175–179.
- Murchison H, Larrimore S, Curtiss R. Isolation and characterization of Streptococcus mutans mutants defective in adherence and aggregation. Infect Immun. 1981;34(3):1044–1055.
- Coburn PS, Baghdayan AS, Dolan GT, et al. An AraC-type transcriptional regulator encoded on the Enterococcus faecalis pathogenicity island contributes to pathogenesis and intracellular macrophage survival. Infect Immun. 2008;76(12):5668–5676.
- Preza D, Olsen I, Aas JA, et al. Bacterial profiles of root caries in elderly patients. J Clin Microbiol. 2008;46(6):2015–2021.
- Eriksson L, Holgerson PL, Johansson I. Saliva and tooth biofilm bacterial microbiota in adolescents in a low caries community. Sci Rep. 2017;7(1):1–12.
- Hurley E, Barrett MP, Kinirons M, et al. Comparison of the salivary and dentinal microbiome of children with severe-early childhood caries to the salivary microbiome of caries-free children. BMC Oral Health. 2019;19(1):13.
- Hu PL, Yuan YH, Yue TL, et al. A new method for the in vitro determination of the bile tolerance of potentially probiotic lactobacilli. Appl Microbiol Biotechnol. 2018;102(4):1903–1910.
- Schleifer KH, Kilpper-Bälz R. Transfer of Streptococcus faecalis and Streptococcus faecium to the genus Enterococcus nom. rev. as Enterococcus faecalis comb. nov. and Enterococcus faecium comb. nov. Int J Syst Evol Microbiol. 1984;34(1):31–34.
- Goldstein EJ, Tyrrell KL, Citron DM. Lactobacillus species: taxonomic complexity and controversial susceptibilities. Clin Infect Dis. 2015;60(Suppl. 2):S98–S107.
- Antony SJ, Stratton CW, Dummer JS. Lactobacillus bacteremia: description of the clinical course in adult patients without endocarditis. Clin Infect Dis. 1996;23(4):773–778.
- Murad CF, Sassone LM, Faveri M, et al. Microbial diversity in persistent root canal infections investigated by checkerboard DNA–DNA hybridization. J Endod. 2014;40(7):899–906.
- Tzanetakis GN, Azcarate-Peril MA, Zachaki S, et al. Comparison of bacterial community composition of primary and persistent endodontic infections using pyrosequencing. J Endod. 2015;41(8):1226–1233.
- Persoon IF, Buijs MJ, Özok AR, et al. The mycobiome of root canal infections is correlated to the bacteriome. Clin Oral Investig. 2017;21(5):1871–1881.
- Rôças IN, Jung IY, Lee CY, et al. Polymerase chain reaction identification of microorganisms in previously root-filled teeth in a South Korean population. J Endod. 2004;30(7):504–508.
- da Silva CC, Chaves Júnior SP, Pereira GL, et al. Antimicrobial photodynamic therapy associated with conventional endodontic treatment: a clinical and molecular microbiological study. Photochem Photobiol. 2018;94(2):351–356.
- Florio W, Cappellini S, Giordano C, et al. A new culture-based method for rapid identification of microorganisms in polymicrobial blood cultures by MALDI-TOF MS. BMC Microbiol. 2019;19(1):1–7.
- O’Connell LM, Santos R, Springer G, et al. Site-specific profiling of the dental mycobiome reveals strong taxonomic shifts during progression of early-childhood caries. Appl Environ Microbiol. 2020;86(7):1–16.
- Bowen WH. Dental caries – not just holes in teeth! A perspective. Mol Oral Microbiol. 2016;31(3):228–233.
- Kim AR, Ahn KB, Yun CH, et al. Lactobacillus plantarum lipoteichoic acid inhibits oral multispecies biofilm. J Endod. 2019;45(3):310–315.
- Twetman S. Are we ready for caries prevention through bacteriotherapy? Braz Oral Res. 2012;26(SPE1):64–70.
- Nadelman P, Magno MB, Masterson D, et al. Are dairy products containing probiotics beneficial for oral health? A systematic review and meta-analysis. Clin Oral Invest. 2018;22(8):2763–2785.
- Tahmourespour A, Kasra-Kermanshahi R, Salehi R. Lactobacillus rhamnosus biosurfactant inhibits biofilm formation and gene expression of caries-inducing Streptococcus mutans. Dent Res J. 2019;16(2):87–94.
- Schwendicke F, Dörfer C, Kneist S, et al. Cariogenic effects of probiotic Lactobacillus rhamnosus GG in a dental biofilm model. Caries Res. 2014;48(3):186–192.
- Dos Santos CS, Dos Santos LS, De Souza MC, et al. Non-opsonic phagocytosis of homologous non-toxigenic and toxigenic Corynebacterium diphtheriae strains by human U-937 macrophages. Microbiol Immunol. 2010;54(1):1–10.
- Cannon JP, Lee TA, Bolanos JT, et al. Pathogenic relevance of Lactobacillus: a retrospective review of over 200 cases. Eur J Clin Microbiol Infect Dis. 2005;24(1):31–40.
- Ikeda T, Yasui C, Hoshino K, et al. Influence of lactic acid bacteria on longevity of Caenorhabditis elegans and host defense against Salmonella enterica serovar Enteritidis. Appl Environ Microbiol. 2007;73(20):6404–6409.
- Fasseas MK, Fasseas C, Mountzouris KC, et al. Effects of Lactobacillus salivarius, Lactobacillus reuteri, and Pediococcus acidilactici on the nematode Caenorhabditis elegans include possible antitumor activity. Appl Microbiol Biotechnol. 2013;97(5):2109–2118.
- Lapirattanakul J, Nomura R, Okawa R, et al. Oral lactobacilli related to caries status of children with primary dentition. Caries Res. 2020;54(2):194–204.
- Klein MI, Flório FM, Pereira AC, et al. Longitudinal study of transmission, diversity, and stability of Streptococcus mutans and Streptococcus sobrinus genotypes in Brazilian nursery children. J Clin Microbiol. 2004;42(10):4620–4626.