681
Views
20
CrossRef citations to date
0
Altmetric
ARTICLE

Occupancy Modeling and Estimation of the Holiday Darter Species Complex within the Etowah River System

, , &
Pages 34-45 | Received 05 Oct 2010, Accepted 19 Jun 2011, Published online: 04 Jan 2012

REFERENCES

  • Akaike , H. 1973 . “ Information theory as an extension of the maximum likelihood principle ” . In Second International Symposium on Information Theory , Edited by: Petrov , B. N. and Csaki , F. 267 – 281 . Budapest : Akademiai Kiado .
  • Akaike , H. 1978 . A Bayesian analysis of the minimum AIC procedure . Annals of the Institute of Statistical Mathematics , 30 : 9 – 14 .
  • Albanese , B. , Peterson , J. T. , Freeman , B. J. and Weiler , D. A. 2007 . Accounting for incomplete detection when estimating site occupancy of bluenose shiner (Pteronotropis welaka) in southwest Georgia . Southeastern Naturalist , 6 : 657 – 668 .
  • Angermeier , P. L. 1995 . Ecological attributes of extinction-prone species: loss of freshwater fishes of Virginia . Conservation Biology , 9 : 143 – 158 .
  • Bailey , L. L. , Simons , T. R. and Pollock , K. H. 2004 . Estimating site occupancy and species detection probability parameters for terrestrial salamanders . Ecological Applications , 14 : 692 – 702 .
  • Bradbury , R. B. , Kyrkos , A. , Morris , A. J. , Clark , S. C. , Perkins , A. J. and Wilson , J. D. 2000 . Habitat selection and breeding success of yellowhammers on lowland farmland . Journal of Applied Ecology , 37 : 789 – 805 .
  • Burdick , S. M. , Hendrixson , H. A. , Vanderkooi , S. P. and Scott , P. 2008 . Age-0 Lost River sucker and shortnose sucker nearshore habitat use in Upper Klamath Lake, Oregon: a patch occupancy approach . Transactions of the American Fisheries Society , 137 : 417 – 430 .
  • Burkhead , N. M. , Walsh , S. J. , Freeman , B. J. and Williams , J. D. 1997 . “ Status and restoration of the Etowah River, an imperiled southern Appalachian ecosystem ” . In Aquatic fauna in peril: the southeastern perspective , Edited by: Benz , G. W. and Collins , D. E. 375 – 444 . Georgia : Southeast Aquatic Research Institute, Special Publication 1, Decatur .
  • Burnham , K. P. and Anderson , D. R. 2002 . Model selection and multimodel inference: a practical information-theoretic approach , New York : Springer-Verlag .
  • Etowah HCP (Habitat Conservation Plan) Advisory Committee . 2007 . Draft Etowah aquatic habitat conservation plan. University of Georgia River Basin Center, Athens . Available: http://www.etowahhcp.org. (April 2011)
  • Freeman , E. A. and Moisen , G. G. 2008 . A comparison of the performance of threshold criteria for binary classification in terms of predicted prevalence and kappa . Ecological Modeling , 217 : 48 – 58 .
  • Freeman , M. C. , Irwin , E. R. , Burkhead , N. M. , Freeman , B. J. and Bart , H. L. Jr . 2005 . “ Status and conservation of the fish fauna of the Alabama River system ” . In Historical changes in large-river fish assemblages of the Americas , Edited by: Rinne , J. N. , Hughes , R. M. and Calamusso , R. 557 – 585 . Bethesda , Maryland : American Fisheries Society, Symposium 45 .
  • Gates , S. and Donald , P. F. 2000 . Local extinction of British farmland birds and prediction of further loss . Journal of Applied Ecology , 37 : 677 – 692 .
  • Gelman , A. and Hill , J. 2007 . Data analysis using regression and multilevel/hierarchical models , Cambridge , , UK : Cambridge University Press .
  • Guillera-Arroita , G. 2011 . Impact of sampling with replacement in occupancy studies with spatial replication . Methods in Ecology and Evolution 2 , DOI: 10.1111/j.2041-210X.2011.00089.x.
  • Guisan , A. and Thuiller , W. 2005 . Predicting species distribution: offering more than simple habitat models . Ecology Letters , 8 : 993 – 1009 .
  • Hines , J. E. , Nichols , J. D. , Royle , J. A. , MacKenzie , D. I. , Gopalaswamy , A. M. , Samba , N. Kumar and Karanth , K. U. 2010 . Tigers on trails: occupancy modeling for cluster sampling . Ecological Applications , 20 : 1456 – 1466 .
  • Homer , C. , Huang , C. , Yang , L. , Wylie , B. and Coan , M. 2004 . Development of a 2001 national land cover database for the United States . Photogrammetric Engineering and Remote Sensing , 70 : 829 – 840 .
  • Hurvich , C. M. and Tsai , C.-L. 1989 . Regression and time series model selection in small samples . Biometrika , 76 : 297 – 307 .
  • Jones , E. B. D. III , Helfman , G. S. , Harper , J. O. and Bolstad , P. V. 1999 . Effects of riparian forest removal on fish assemblages in southern Appalachian streams . Conservation Biology , 13 : 1454 – 1465 .
  • Kendall , W. L. and White , G. C. 2009 . A cautionary note on substituting spatial subunits for repeated temporal sampling in studies of site occupancy . Journal of Applied Ecology , 46 : 1182 – 1188 .
  • Laake , J. and Rexstad , E. 2008 . RMark: R code for MARK analysis . R package version 1.8.8
  • MacKenzie , D. I. , Bailey , L. L. and Nichols , J. D. 2004 . Investigating species co-occurrence patterns when species are detected imperfectly . Journal of Animal Ecology , 73 : 546 – 555 .
  • MacKenzie , D. I. , Nichols , J. D. , Lachman , G. B. , Droege , S. , Royle , J. A. and Langtimm , C. A. 2002 . Estimating site occupancy rates when detection probabilities are less than one . Ecology , 83 : 2248 – 2255 .
  • MacKenzie , D. I. , Nichols , J. D. , Royle , J. A. , Pollock , K. H. , Bailey , L. L. and Hines , J. E. 2006 . “ Occupancy estimation and modeling: inferring patterns and dynamics of species occurrence ” . Burlington , Massachusetts : Elsevier/Academic Press .
  • MacKenzie , D. I. and Royle , J. A. 2005 . Designing occupancy studies: general advice and allocating survey effort . Journal of Applied Ecology , 42 : 1105 – 1114 .
  • Manel , S. , Williams , H. C. and Ormerod , S. J. 2001 . Evaluating presence–absence models in ecology: the need to account for prevalence . Journal of Applied Ecology , 38 : 921 – 931 .
  • O’Connell , A. F. Jr. , Talaney , N. W. , Bailey , L. L. , Saver , J. R. , Cook , R. and Gilbert , A. T. 2006 . Estimating site occupancy and detection probability parameters for meso- and large mammals in a coastal ecosystem . Journal of Wildlife Management , 70 : 1625 – 1633 .
  • Osborne , L. L. and Wiley , M. J. 1992 . Influence of tributary spatial position on the structure of warmwater fish assemblages . Canadian Journal of Fisheries and Aquatic Sciences , 49 : 671 – 681 .
  • Pearce , J. and Lindenmayer , D. 1998 . Bioclimatic analysis to enhance reintroduction biology of the endangered helmet honeyeater (Lichenostomus melanopscassidix) in southeastern Australia . Restoration Ecology , 6 : 238 – 243 .
  • Pfad , M. F. and Witowski , E. T. F. 1997 . Use of geographical information systems in the search for additional populations, or sites suitable for reestablishment, of the endangered Northern Province–endemic Euphorbia civicola . South African Journal of Botany , 63 : 351 – 355 .
  • R Development Core Team . 2008 . “ R: a language and environment for statistical computing ” . Vienna , , Austria : R Foundation for Statistical Computing .
  • Roy , A. H. , Freeman , B. J. and Freeman , M. C. 2007 . Riparian influences on stream fish assemblage structure in urbanizing streams . Landscape Ecology , 22 : 385 – 402 .
  • Royle , J. A. and Dorazio , R. M. 2008 . Hierarchical modeling and inference in ecology , Amsterdam : Academic Press .
  • Royle , J. A. and Nichols , J. D. 2003 . Estimating abundance from repeated presence/absence data or point counts . Ecology , 84 : 777 – 790 .
  • Schlosser , I. J. 1987 . “ A conceptual framework for fish communities in small warmwater streams ” . In Community and evolutionary ecology of North American stream fishes , Edited by: Matthews , W. J. and Heins , D. C. 17 – 28 . Norman : University of Oklahoma Press .
  • Shreve , R. L. 1966 . Statistical law of stream numbers . Journal of Geology , 74 : 17 – 37 .
  • Smith , T. A. and Kraft , C. E. 2005 . Stream fish assemblages in relation to landscape position and local habitat variables . Transactions of the American Fisheries Society , 134 : 430 – 440 .
  • Storey , C. M. 2003 . Genetic population structure and life history aspects of the federally threatened Cherokee darter, Etheostoma scotti , Athens : Master's thesis. University of Georgia .
  • Suttkus , R. D. and Etnier , D. A. 1991 . Etheostoma tallapoosae and E. brevirostrum, two new darters, subgenus Ulocentra, from the Alabama River . Tulane Studies in Zoology and Botany , 28 : 1 – 24 .
  • Taylor , C. M. , Holder , T. L. , Fiorillo , R. A. , Williams , L. R. , Thomas , R. B. and Warren , M. L. Jr . 2006 . Distribution, abundance, and diversity of stream fishes under variable environmental conditions . Canadian Journal of Fisheries and Aquatic Science , 63 : 43 – 54 .
  • Tyre , A. J. , Tenhumberg , B. , Field , S. A. , Kiejalke , D. , Parris , K. and Possingham , H. P. 2003 . Improving precision and reducing bias in biological surveys: estimating false negative error rates . Ecological Applications , 13 : 1790 – 1801 .
  • Walters , D. M. , Leigh , D. S. and Bearden , A. B. 2003 . Urbanization, sedimentation, and the homogenization of fish assemblages in the Etowah River basin, USA . Hydrobiologia , 494 : 5 – 10 .
  • Wang , L. Z. , Lyons , J. and Kanehl , P. 2001 . Impacts of urbanization on stream habitat and fish across multiple spatial scales . Environmental Management , 28 : 255 – 266 .
  • Warren , M. L. Jr. , Angermeier , P. L. , Burr , B. M. and Haag , W. R. 1997 . “ Decline of a diverse fish fauna: patterns of imperilment and protection in the southeastern United States ” . In Aquatic fauna in peril: the southeastern perspective , Edited by: Benz , G. W. and Collins , D. E. 105 – 164 . Decatur , Georgia : Southeastern Aquatic Research Institute, Special Publication 1 .
  • Warren , M. L. Jr. , Burr , B. M. , Walsh , S. J. , Bart , H. L. , Cashner , R. C. , Etnier , D. A. , Freeman , B. J. , Kuhajda , B. R. , Mayden , R. L. , Robinson , H. W. , Ross , S. T. and Starnes , W. C. 2000 . Diversity, distribution, and conservation status of the native freshwater fishes of the southern United States . Fisheries , 25 ( 10 ) : 7 – 31 .
  • Wear , D. N., and Greis , J. G. 2002 . Southern forest resource assessment: summary report . U.S. Forest Service General Technical Report SRS-54
  • Wenger , S. J. , Peterson , J. T. , Freeman , M. C. , Freeman , B. J. and Homans , D. D. 2008 . Stream fish occurrence in response to impervious cover, historical land use, and hydrogeomorphic factors . Canadian Journal of Fisheries and Aquatic Sciences , 65 : 1250 – 1264 .
  • White , G. C. and Burnham , D. C. 1999 . Program MARK: survival estimation from populations of marked animals . Bird Studies , 46 ( Supplement ) : S120 – S139 .
  • Williams , B. K. , Nichols , J. D. and Conroy , M. J. 2002 . Analysis and management of animal populations , San Diego , California : Academic Press .
  • Wiser , S. , Peet , R. K. and White , P. S. 1998 . Prediction of rare plant occurrence: a southern Appalachian example . Ecological Applications , 8 : 909 – 920 .
  • Wood , R. M. and Mayden , R. L. 1993 . Systematics of the Etheostoma jordani species group (Teleostei: Percidae), with descriptions of three new species . Bulletin of the Alabama Museum of Natural History , 16 : 31 – 46 .
  • Yanez , M. and Floater , G. 2000 . Spatial distribution and habitat preference of the endangered tarantula Brachypelma klaasi (Araneae: Theraphosidae) in Mexico . Biodiversity and Conservation , 9 : 795 – 810 .

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.