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BIOANALYTICAL

A Parametric Study of Sample Lysis and DNA Purification Techniques for Use in Automated Devices

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Pages 1701-1719 | Received 11 Feb 2008, Accepted 03 Apr 2008, Published online: 16 Jun 2010

REFERENCES

  • Abolmaaty , A. , El-Shemy , M.G. , Khallaf , M.F. , and Levin , R.E. 1998 . Effect of lysing methods and their variables on the yield of Escherichia coli O157 : H7 DNA and its PCR amplification . Journal of Microbiological Methods , 34 : 133 – 141 .
  • Anderson , R.C. , Su , X. , Bogdan , G.J. , and Fenton , J. 2000. A miniature integrated device for automated multistep genetic assays. Nucleic Acids Research , 28: e60.
  • Baker , M.J. 2005 . Isolation of nucleic acids. US Patent 6,914,137 .
  • Belgrader , P. , Hansford , D. , Kovacs , G.T.A. , Venkateswaran , K. , Mariella , R. , Milanovich , F. , Nasarabadi , S. , Okuzumi , M. , Pourahmadi , F. , and Northrup , M.A. 1999 . A minisonicator to rapidly disrupt bacterial spores for DNA analysis . Analytical Chemistry , 71 : 4232 – 4236 .
  • Boom , R. , Sol , C.J.A. , Salimans , M.M.M. , Jansen , C.L. , Wertheim-van Dillen , P.M.E. , and van der Noordaa , J. 1990 . Rapid and simple method for purification of nucleic-acids . Journal of Clinical Microbiology , 28 : 495 – 503 .
  • Boom , W.R. , Adriaanse , H.M.A. , Kievits , T. , and Lens , P.F. 1993 . Process for isolating nucleic acid. US Patent 5,234,809 .
  • Bruckner-Lea , C.J. , Tsukuda , T. , Dockendorff , B. , Follansbee , J.C. , Kingsley , M.T. , Ocampo , C. , Stults , J.R. , and Chandler , D.P. 2002 . Renewable microcolumns for automated DNA purification and flow-through amplification: from sediment samples through polymerase chain reaction . Analytica Chimica Acta , 469 : 129 – 140 .
  • Cady , N.C. , Stelick , S. , and Batt , C.A. 2003 . Nucleic acid purification using microfabricated silicon structures . Biosensors and Bioelectronics , 19 : 59 – 66 .
  • Cheng , J. , Sheldon , E.L. , Wu , L. , Uribe , A. , Gerrue , L.O. , Carrino , J. , Heller , M.J. , and O'Connell , J.P. 1998 . Preparation and hybridization analysis of DNA/RNA from E-coli on microfabricated bioelectronic chips . Nature Biotechnology , 16 : 541 – 546 .
  • Colpan , M. , Schorr , J. , Herrmann , R. , and Feuser , P. 2002 . Chromatographic purification and separation process for mixtures of nucleic acids. U.S. Patent 6,383,393 .
  • Cras , J.J. , Rowe-Taitt , C.A. , Nivens , D.A. , and Ligler , F.S. 1999 . Comparison of chemical cleaning methods for glass in preparation for silanization . Biosensors and Bioelectronics , 14 : 683 – 688 .
  • Di Carlo , D. , Jeong , K.-H. , and Lee , L.P. 2003 . Reagentless mechanical cell lysis by nanoscale barbs in microchannels for sample preparation . Lab on a Chip , 3 : 287 – 291 .
  • Fykse , E.M. , Olsen , J.S. , and Skogan , G. 2003 . Application of sonication to release DNA from Bacillus cereus for quantitative detection by real-time PCR . Journal of Microbiological Methods , 55 : 1 – 10 .
  • Gonzalez , D. 1998 . Method for purifying nucleic acids from heterogenous mixtures. US Patent 5,783,686 .
  • Haj-Ahmad , Y. 2001 . Nucleic acid purification and process. US Patent 6,291,248 .
  • Hong , J.W. , Studer , V. , Hang , G. , Anderson , W.F. , and Quake , S.R. 2004 . A nanoliter-scale nucleic acid processor with parallel architecture . Nature Biotechnology , 22 : 435 – 439 .
  • Huang , Y. , Mather , E.L. , Bell , J.L. , and Madou , M. 2002 . MEMS-based sample preparation for molecular diagnostics . Anaytical and Bioanalytical Chemistry , 372 : 49 – 65 .
  • Lee , S.-W. and Tai , Y.-C. 1999 . A micro cell lysis device . Sensors and Actuators A , 73 : 74 – 79 .
  • Lee , J.-G. , Cheong , K.H. , Huh , N. , Kim , S. , Choi , J.-W. , and Ko , C. 2006. Microchip-based one step DNA extraction and real-time PCR in one chamber for rapid pathogen identification. Lab on a Chip , 6: 886–895.
  • Legendre , L.A. , Bienvenue , J.M. , Roper , M.G. , Ferrance , J.P. , and Landers , J.P. 2006 . A simple, valveless microfluidic sample preparation device for extraction and amplification of DNA from nanoliter-volume samples . Analytical Chemistry , 78 : 1444 – 1451 .
  • Li , P.C.H. and Harrison , D.J. 1997 . Transport, manipulation, and reaction of biological cells on-chip using electrokinetic effects . Analytical Chemistry , 69 : 1564 – 1568 .
  • Lin , B.C. , Wang , Z. , Vora , G.J. , Thornton , J.A. , Schnur , J.M. , Thach , D.C. , Blaney , K.M. , Ligler , A.G. , Malanoski , A.P. , Santiago , J. , Walter , E.A. , Agan , B.K. , Metzgar , D. , Seto , D. , Daum , L.T. , Kruzelock , R. , Rowley , R.K. , Hanson , E.H. , Tibbetts , C. , and Stenger , D.A. 2006 . Broad-spectrum respiratory tract pathogen identification using resequencing DNA microarrays . Genome Research , 16 : 527 – 535 .
  • Lin , B. , Blaney , K.M. , Malanoski , A.P. , Ligler A.G. , Schnur , J.M. , Metzgar , D. , Russell , K.L. , and Stenger , D.A. 2007 . Using Resequencing Microarray as a Multiple Respiratory Pathogen Detection Assay . Journal of Clinical Microbiology , 45 : 443 – 452 .
  • Little , M.C. 1991 . Process for the purification of DNA on diatomaceous earth. US Patent 5,075,430 .
  • Malanoski , A.P. , Lin , B.C. , Wang , Z. , Schnur , J.M. , and Stenger , D.A. 2006 . Automated identification of multiple micro-organisms from resequencing DNA microarrays . Nucleic Acids Research , 34 : 5300 – 5311 .
  • More , M.I. , Herrick , J.B. , Silva , M.C. , Ghiorse , W.C. , and Madsen , E.L. 1994 . Quantitative cell-lysis of indigenous microorganisms and rapid extraction of microbial DNA from sediment . Applied and Environmental Microbiology , 60 : 1572 – 1580 .
  • Nargessi , R.D. , 2005 . Magnetic isolation and purification of nucleic acids. US Patent 6,855,499 .
  • Olander , M.A. , Lihme , A.O.F. , Hobley , T.J. , Simon , M. , Theodossiou , I. , and Thomas , O.R.T. 2004 . Particulate material for purification of bio-macromolecules. US Patent 6,783,962 .
  • Su , X. and Comeau , A.M. 1999 . Cellulose as a matrix for nucleic acid purification . Analytical Biochemistry , 267 : 415 – 418 .
  • Tian , H.J. , Huhmer , A.F.R. , and Landers , J.P. 2000 . Evaluation of silica resins for direct and efficient extraction of DNA from complex biological matrices in a miniaturized format . Analytical Biochemistry , 283 : 175 – 191 .
  • Turner , R.B. , Biedermann , K.A. , Morgan , J.M. , Keswick , B. , Ertel , K.D. , and Barker , M.F. 2004 . Efficacy of organic acids in hand cleansers for prevention of rhinovirus infections . Antimicrobial Agents and Chemotherapy , 48 : 2595 – 2598 .
  • Waters , L.C. , Jacobson , S.C. , Kroutchinina , N. , Khandurina , J. , Foote , R.S. , and Ramsey , J.M. 1998 . Microchip device for cell lysis, multiplex PCR amplification, and electrophoretic sizing . Analytical Chemistry , 70 : 158 – 162 .
  • Woodard , D.L. , Howard , A.J. , and Down , J.A. 1997. DNA purification by solid phase extraction using fluorinated celite. US Patent 5,625,054.
  • Yuen , P.K. , Kricka , L.J. , Fortina , P. , Panaro , N.J. , Sakazume , T. , and Wilding , P. 2001 . Microchip module for blood sample preparation and nucleic acid amplification reactions . Genome Research , 11 : 405 – 412 .
  • Yeung , S.W. , and Hsing , I.-M. 2006 . Manipulation and extraction of genomic DNA from cell lysate by functionalized magnetic particles for lab on a chip applications . Biosensors and Bioelectronics , 21 : 989 – 997 .
  • Yeung , S.-W. , Lee , T. M.-H. , Cai , H. , and Hsing , I.-M. 2006 . A DNA biochip for on-the-spot multiplexed pathogen identification . Nucleic Acids Research , 34 : e118 .

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