Determination of DNA and Thrombin by an Electrochemical Sensor Employing Aggregation of Crosslinked Gold Nanoparticles and Aptamer Segments

REFERENCES

• Baron , R. , B. Willner , and I. Willner . 2007 . Biomolecule-nanoparticle hybrids as functional units for nanobiotechnology . Chem. Commun. 323 – 332 .
   PubMed Web of Science ®Google Scholar
• Bock , L. C. , L. C. Griffin , J. A. Latham , E. H. Vermaas , and J. J. Toole . 1992 . Selection of single-stranded DNA molecules that bind and inhibit human thrombin . Nature 355 : 564 – 566 .
   PubMed Web of Science ®Google Scholar
• Cao , Y. C. , R. Jin , and C. A. Mirkin . 2002 . Nanoparticles with Raman spectroscopic fingerprints for DNA and RNA Detection . Science 297 : 1536 – 1540 .
   PubMed Web of Science ®Google Scholar
• Chumbimuni-Torres , K. Y. , J. Wu , C. Clawson , M. Galik , A. Walter , G.-U. Flechsig , E. Bakker , L. Zhang , and J. Wang . 2010 . Amplified potentiometric transduction of DNA hybridization using ion-loaded liposomes . Analyst. 135 : 1618 – 1623 .
   PubMed Web of Science ®Google Scholar
• Demers , L. M. , C. A. Mirkin , R. C. Mucic , I. Robert , A. Reynolds , R. L. Letsinger , R. Elghanian , and G. Viswanadham . 2000 . A fluorescence-based method for determining the surface coverage and hybridization efficiency of thiol-capped oligonucleotides bound to gold thin films and nanoparticles . Anal. Chem. 72 : 5535 – 5541 .
   PubMed Web of Science ®Google Scholar
• Doron , A. , E. Katz , and I. Willner . 1995 . Organization of Au colloids as monolayer films onto ITO glass surfaces: Application of the metal colloid films as base interfaces to construct redox-active monolayers . Langmuir. 11 : 1313 – 1317 .
   Web of Science ®Google Scholar
• Drummond , T. G. , M. G. Hill , and J. K. Barton . 2003 . Electrochemical DNA sensors . Nat Biotech. 21 : 1192 – 1199 .
   PubMed Web of Science ®Google Scholar
• Elbaz , J. , M. Moshe , B. Shlyahovsky , and I. Willner . 2009 . Cooperative multicomponent self-assembly of nucleic acid structures for the activation of DNAzyme cascades: A paradigm for DNA sensors and aptasensors . Chem. Eur. J. 15 : 3411 – 3418 .
   PubMed Web of Science ®Google Scholar
• Elbaz , J. , B. Shlyahovsky , D. Li , and I. Willner . 2008. Parallel analysis of two analytes in solutions or on surfaces by using a bifunctional aptamer: Applications for biosensing and logic gate operations. Chem. Bio. Chem. 9: 232–239.
   Google Scholar
• Elghanian , R. , J. J. Storhoff , R. C. Mucic , R. L. Letsinger , and C. A. Mirkin . 1997 . Selective colorimetric detection of polynucleotides based on the distance-dependent optical properties of gold nanoparticles . Science 277 : 1078 – 1081 .
   PubMed Web of Science ®Google Scholar
• Ellington , A. D. , and J. W. Szostak . 1990 . In vitro selection of RNA molecules that bind specific ligands . Nature 346 : 818 – 822 .
   PubMed Web of Science ®Google Scholar
• Ensafi , A. A. , M. Taei , H. R. Rahmani , and T. Khayamian . 2011 . Sensitive DNA impedance biosensor for detection of cancer, chronic lymphocytic leukemia based on gold nanoparticles/gold modified electrode . Electrochim. Acta. 56 : 8176 – 8183 .
   Web of Science ®Google Scholar
• Gao , A. , N. Lu , P. Dai , T. Li , H. Pei , X. Gao , Y. Gong , Y. Wang , and C. Fan . 2011 . Silicon-nanowire-based CMOS-compatible field-effect transistor nanosensors for ultrasensitive electrical detection of nucleic acids . Nano. Lett. 11 : 3974 – 3978 .
   PubMed Web of Science ®Google Scholar
• Hermann , T. , and D. J. Patel . 2000 . Adaptive recognition by nucleic acid aptamers . Science 287 : 820 – 825 .
   PubMed Web of Science ®Google Scholar
• Li , D. , B. Shlyahovsky , J. Elbaz , and I. Willner . 2007 . Amplified analysis of low-molecular-weight substrates or proteins by the self-assembly of DNAzyme−aptamer conjugates . J. Am. Chem. Soc. 129 : 5804 – 5805 .
   PubMed Web of Science ®Google Scholar
• Liu , Y. , and C. Z. Huang . 2012 . One-step conjugation chemistry of DNA with highly scattered silver nanoparticles for sandwich detection of DNA . Analyst. 137 : 3434 – 3436 .
   PubMed Web of Science ®Google Scholar
• McKenzie , F. , K. Faulds , and D. Graham . 2007 . Sequence-specific DNA detection using high-affinity LNA-functionalized gold nanoparticles . Small 3 : 1866 – 1868 .
   PubMed Web of Science ®Google Scholar
• Merkoci , A. , M. Aldavert , S. Mariın , and S. Alegret . 2005 . New materials for electrochemical sensing V: Nanoparticles for DNA labeling . TrAC, Trends Anal. Chem. 24 : 341 – 349 .
   Web of Science ®Google Scholar
• Miranda-Castro , R. , P. de-los-Santos-Álvarez , M. J. Lobo-Castañón , and A. J. Miranda-Ordieres . 2007 . Hairpin-DNA probe for enzyme-amplified electrochemical detection of legionella pneumophila . Anal. Chem. 79 : 4050 – 4055 .
   PubMed Web of Science ®Google Scholar
• Mirkin , C. A. , R. L. Letsinger , R. C. Mucic , and J. J. Storhoff . 1996 . A DNA-based method for rationally assembling nanoparticles into macroscopic materials . Nature 382 : 607 – 609 .
   PubMed Web of Science ®Google Scholar
• Patil , S. , D. Rhodes , and D. Burgess . 2005 . DNA-based therapeutics and DNA delivery systems: A comprehensive review . AAPS J. 7 : E61 – E77 .
   PubMed Web of Science ®Google Scholar
• Patolsky , F. , K. T. Ranjit , A. Lichtenstein , and I. Willner . 2000 . Dendritic amplification of DNA analysis by oligonucleotide-functionalized Au-nanoparticles . Chem. Commun. 1025 – 1026 .
   Web of Science ®Google Scholar
• Polsky , R. , R. Gill , L. Kaganovsky , and I. Willner . 2006 . Nucleic acid-functionalized Pt nanoparticles: Catalytic labels for the amplified electrochemical detection of biomolecules . Anal. Chem. 78 : 2268 – 2271 .
   PubMed Web of Science ®Google Scholar
• Robertson , D. L. , and G. F. Joyce . 1990 . Selection in vitro of an RNA enzyme that specifically cleaves single-stranded DNA . Nature 344 : 467 – 468 .
   PubMed Web of Science ®Google Scholar
• Rosi , N. L. , and C. A. Mirkin . 2005 . Nanostructures in biodiagnostics . Chem. Rev. 105 : 1547 – 1562 .
   PubMed Web of Science ®Google Scholar
• Service , R. F. 1998 . Coming soon: The pocket DNA sequencer . Science 282 : 399 – 401 .
   PubMed Web of Science ®Google Scholar
• Tan , Y., Y. Li , and D. Zhu . 2002 . Fabrication of gold nanoparticles using a trithiol (thiocyanuric acid) as the capping agent . Langmuir. 18 : 3392 – 3395 .
   Web of Science ®Google Scholar
• Taton , T. A. , C. A. Mirkin , and R. L. Letsinger . 2000 . Scanometric DNA array detection with nanoparticle probes . Science 289 : 1757 – 1760 .
   PubMed Web of Science ®Google Scholar
• Taton , T. A. , R. C. Mucic , C. A. Mirkin , and R. L. Letsinger . 2000 . The DNA-mediated formation of supramolecular mono- and multilayered nanoparticle structures . J. Am. Chem. Soc. 122 : 6305 – 6306 .
   Web of Science ®Google Scholar
• Wang , X. , P. Dong , P. He , and Y. Fang . 2010 . A solid-state electrochemiluminescence sensing platform for detection of adenosine based on ferrocene-labeled structure-switching signaling aptamer . Anal. Chim. Acta. 658 : 128 – 132 .
   PubMed Web of Science ®Google Scholar
• Wang , X. P. Dong , W. Yun , Y. Xu , P. He , and Y. Fang . 2009. A solid-state electrochemiluminescence biosensing switch for detection of thrombin based on ferrocene-labeled molecular beacon aptamer. Biosens Bioelectron. 24: 3288–3292.
   PubMed Web of Science ®Google Scholar
• Wang , X. , P. He , and Y. Fang . 2010 . A solid-state electrochemiluminescence biosensing switch for detection of DNA hybridization based on ferrocene-labeled molecular beacon . J. Lumines. 130 : 1481 – 1484 .
   Web of Science ®Google Scholar
• Wei , H. , B. Li , J. Li , E. Wang , and S. Dong . 2007 . Simple and sensitive aptamer-based colorimetric sensing of protein using unmodified gold nanoparticle probes . Chem. Commun. 3735 – 3737 .
   PubMed Web of Science ®Google Scholar
• Won , B. Y. , S. Shin , R. Fu , S. C. Shin , D. Y. Cho , and H. G. Park . 2011 . A one-step electrochemical method for DNA detection that utilizes a peroxidase-mimicking DNAzyme amplified through PCR of target DNA . Biosens. Bioelectron. 30 : 73 – 77 .
   PubMed Web of Science ®Google Scholar
• Xiao , Y. , V. Pavlov , R. Gill , T. Bourenko , and I. Willner . 2004 . Lighting up biochemiluminescence by the surface self-assembly of DNA-hemin complexes . Chembiochem. 5 : 374 – 379 .
   PubMed Web of Science ®Google Scholar
• Xu , H. , S. Gao , Q. Yang , D. Pan , L. Wang , and C. Fan . 2011 . Amplified fluorescent recognition of G-quadruplex folding with a cationic conjugated polymer and DNA intercalator . Appl. Mater. Inter. 2 : 3211 – 3216 .
   Web of Science ®Google Scholar
• Yang , W. , M. Ozsoz , D. B. Hibbert , and J. J. Gooding . 2002 . Evidence for the direct interaction between methylene blue and guanine bases using DNA-modified carbon paste electrodes . Electroanal. 14 : 1299 – 1302 .
   Web of Science ®Google Scholar
• Zhang , J. , S. Song , L. Wang , D. Pan , and C. Fan . 2007 . A gold nanoparticle-based chronocoulometric DNA sensor for amplified detection of DNA . Nat. Protoc. 2 : 2888 – 2895 .
   PubMed Web of Science ®Google Scholar