Characterisation of tetra-nucleotide microsatellite loci in the ostrich (Struthio camelus)

References

• Bardeleben , C , Palchevskiy , V , Calsbeek , R and Wayne , RK . 2004 . Isolation of polymorphic tetranucleotide microsatellite markers for the brown anole, Anolis sagrei . Molecular Ecology Notes , 4 : 176 – 178 .
   Google Scholar
• Bardeleben , C , Gray , M , Austin , J and Amorim Do Rosario , I . 2005 . Isolation of polymorphic tetranucleotide microsatellite markers for the large-billed scrubwren, Sericornis magnirostris . Molecular Ecology Notes , 5 : 143 – 145 .
   Google Scholar
• Chakraborty , R , Kimmel , M , Stivers , DN , Davison , J and Deka , R . 1997 . Relative mutation rates of di-, tri-, and tetra-nucleotide microsatellite loci . Proceedings of the National Academy of Science of the USA , 94 : 1041 – 1046 .
   PubMed Web of Science ®Google Scholar
• Cloete , SWP and Malecki , IA . 2011 . “ Breeder welfare: the past, present and future ” . In ‘The welfare of farmed ratites’ , Edited by: Glatz , P.C. , Lunam , C.A. and Malecki , I. 13 – 44 . Germany : Springer-Verlag Berlin Heidelberg .
   Google Scholar
• Cracraft , J . 1974 . Phylogeny and evolution of the ratite birds . Ibis , 116 : 494 – 521 .
   Web of Science ®Google Scholar
• Davids, A.H. (2011) Estimation of genetic distances and heterosis in three ostrich (Struthio camelus) breeds for the improvement of productivity. M.Sc. Thesis, Stellenbosch University
   Google Scholar
• Drummond, A.J., Ashton, B., Buxton, S., Cheung, M., Cooper, A., Heled, J., Kearse, M., Moir, R., Stones-Havas, S., Sturrock, S., Thierer, T. & Wilson, A. (2010) Geneious v5·1, Available http://www.geneious.com
   Google Scholar
• Eckert , KA , Mowery , A and Hile , SE . 2002 . Misalignment-mediated DNA polymerase beta mutations: comparison of microsatellite and frame-shift error rates using a forward mutation assay . Biochemistry , 41 : 10490 – 10498 .
   PubMed Web of Science ®Google Scholar
• Ellegren , H . 2004 . Microsatellites: Simple sequences with complex evolution . Nature Reviews: Genetics , 5 : 435 – 445 .
   PubMed Web of Science ®Google Scholar
• Freitag , S and Robinson , TJ . 1992 . Phylogeographic patterns in mitochondrial DNA of the ostrich (Struthio camelus) . The Auk , 110 : 614 – 622 .
   Web of Science ®Google Scholar
• Hadrath , O and Baker , AJ . 2001 . Complete mitochondrial sequence of extinct birds: ratite phylogenetics and the vicariance biogeography hypothesis . Proceedings of the Royal Society , 268 : 939 – 945 .
   Web of Science ®Google Scholar
• Hamilton , MB , Pincus , EL , Di Fiore , A and Fleischer , RC . 1999 . Universal linker and ligation procedures for construction of genomic DNA libraries enriched for microsatellites . BioTechniques , 27 : 504 – 507 .
   Google Scholar
• Hammond , EL , Lymbery , AJ , Martin , GM , Groth , D and Wetherall , JD . 2002 . Microsatellite analysis of genetic diversity in wild and farmed emus (Dromaius novaehollandiae) . Journal of Heredity , 93 : 376 – 380 .
   Web of Science ®Google Scholar
• Harshman , J , Edward , L , Braun , MJ , Braun , CJ , Huddleston , RCK , Bowie , JL , Chojnowski , SJ , Hackett , KH , Kimball , RT , Marks , BD , Miglia , KJ , Moore , WS , Reddy , S , Sheldon , FH , Steadman , DW , Steppan , SJ , Witt , CC and Yuri , T . 2008 . Phylogenomic evidence for multiple losses of flight in ratite birds . Proceedings of the Natural Academy of Science , 105 : 13462 – 13467 .
   PubMed Web of Science ®Google Scholar
• Havenstein, G.B., Ferket, P.R., Scheideler, S.E. & Larson, B.T. (1994a) Growth, livability, and feed conversion of (1957) vs (1991) broilers when fed "typical" (1957) and (1991) broiler diets. Poultry Science, 73: 1785-1794
   Google Scholar
• Havenstein, G.B., Ferket, P.R., Scheideler, S.E. & Rives, D.V. (1994b) Carcass composition and yield of (1991) vs (1957) broilers when fed “typical” (1957) and (1991) broiler diets. Poultry Science, 73: 1795-1804
   Google Scholar
• Huang , Y , Liu , Q , Tang , B , Liu , W , Zhang , L , Li , N and Hu , X . 2008 . A preliminary microsatellite genetic map of the ostrich (Struthio camelus) . Cytogenetic and Genome Research , 121 : 130 – 136 .
   Web of Science ®Google Scholar
• Kawka , M , Horbańczuk , JO , Sacharczuk , M , Zieba , G , Łukaszewicz , M , Jaszczak , K and Parada , R . 2007 . Genetic characteristics of the ostrich population using molecular methods . Poultry Science , 86 : 277 – 281 .
   PubMed Web of Science ®Google Scholar
• Kawka , M , Parada , R , Jaszczak , K and Horbańczuk , JO . 2011 . The use of microsatellite polymorphism in genetic mapping of the ostrich (Struthio camelus) . Molecular Biology Reports , 39 : 23369 – 3374 . DOI:10 1007/s11033-011-1107-5
   Google Scholar
• Kimwele , CN , Graves , JA , Burke , T and Hanotte , O . 1998 . Development of microsatellite markers for parentage typing of chicks in the ostrich Struthio camelus . Molecular Ecology , 7 : 247 – 255 .
   Google Scholar
• Kimwele , CN and Graves , JA . 2003 . A molecular genetic analysis of the communal nesting of the ostrich (Struthio camelus) . Molecular Ecology , 12 : 229 – 236 .
   PubMed Web of Science ®Google Scholar
• Kumari , P and Kemp , SJ . 1998 . Polymorphic microsatellite markers in the ostrich (Struthio camelus) . Molecular Ecology , 7 : 133 – 134 .
   Web of Science ®Google Scholar
• Malecki , IA , Rybnik , PK and Martin , GB . 2008 . Artificial insemination (AI) technology for ratites: a review . Australian Journal of Experimental Agriculture , 48 : 1284 – 1292 .
   Google Scholar
• Malecki , IA and Rybnik-Trzaskowska , PK . 2011 . “ Natural mating and artificial insemination ” . In Welfare of Farmed Ratites , Edited by: Glatz , P.C. , Lunam , C.A. and Malecki , I. 45 – 64 . Germany : Springer-Verlag Berlin Heidelberg .
   Google Scholar
• Munyard , KA , Ledger , JM , Lee , CY , Babra , C and Groth , DM . 2009 . Characterization and multiplexing of alpaca tetra-nucleotide microsatellite markers . Small Ruminant Research , 85 : 153 – 156 .
   Web of Science ®Google Scholar
• Nei , M . 1987 . Molecular Evolutionary Genetics , New York : Columbia Press .
   Google Scholar
• Primmer , CR , Raudsepp , T , Chowdhary , BP , Moller , AP and Ellergren , H . 1997 . Low frequency of microsatellites in the avian genome . Genome Research , 7 : 471 – 482 .
   PubMed Web of Science ®Google Scholar
• Raymond , M and Rousset , F . 1995 . Genepop version 1·2: population genetics software for exact tests and ecumenicism . Journal of Heredity , 86 : 8 – 249 .
   Google Scholar
• Sambrook , J , Fritsch , EF and Maniatis , T . 1989 . Molecular Cloning: A Laboratory Manual , New York : Cold Spring Harbour Laboratory, Cold Spring Harbour .
   Google Scholar
• Tang , B , Huang , YH , Lin , L , Hu , XX , Feng , JD , Yao , P , Zhang. , L and Li , N . 2003 . Isolation and characterization of 70 novel microsatellite markers from ostrich (Struthio camelus) genome . Genome , 46 : 833 – 840 .
   Web of Science ®Google Scholar
• Taylor, E.L., Vercoe, P., Cockrem, J., Groth, D., Wetherall, J.D., & Martin, G.B. (1999) Isolation and characterization of microsatellite loci in the emu, Dromaius novaehollandiae, and cross-species amplification within Ratitae. Molecular Ecology, 8: 1963, 1964
   Google Scholar
• Taylor , EL , Blanche , D , GROTH , D , Wetherall , JD and Martin , GB . 2000 . Genetic evidence for mixed parentage in nests of the emu (Dromaius novaehollandiae) . Behavioral Ecology and Sociobiology , 47 : 359 – 364 .
   Web of Science ®Google Scholar
• Van Oosterhout, C., Hutchinson, W.F., Wills, D.P.M. & Shipley, P. (2004) MICROCHECKER: software for identifying and correcting genotyping errors in microsatellite data. Molecular Ecology Notes, 4: 535– 538. doi:10·1111/j·1471-8286.(2004)·00684.x
   Google Scholar
• Van Tuinen , M , Sibley , CG and Hedges , SB . 1998 . Phylogenomic evidence for multiple losses of flight in ratite birds inferred from DNA Sequences of the Mitochondrial Ribosomal Genes . Molecular Biology and Evolution , 15 : 370 – 376 .
   PubMed Web of Science ®Google Scholar
• Ward , WK , Mathews , ME , Murray , ND and Robinson , NA . 1994 . An ostrich di-nucleotide repeat polymorphism at the VIAS-OS2 locus . Animal Genetics , 25 : 291
   Web of Science ®Google Scholar
• Ward , WK , Mcpartland , HC , Matthews , ME and Robinson , NA . 1997 . Ostrich microsatellite polymorphism at the VIAS-OS4, VIAS-OS8, VIAS-OS22, and VIAS-OS29 loci . Animal Genetics , 29 : 331
   Web of Science ®Google Scholar
• Weir , BS and Cockerham , CC . 1984 . Estimating F-statistics for the analysis of population structure . Evolution , 38 : 1358 – 1370 .
   PubMed Web of Science ®Google Scholar
• Zane , L , Bargelloni , L and Patarnello , T . 2002 . Strategies for microsatellite isolation: a review . Molecular Ecology , 11 : 1 – 16 .
   PubMed Web of Science ®Google Scholar