Bacterial and fungal community composition over time in chicken litter with high or low moisture content

References

• Altschul , SF , Madden , TL , Schäffer , AA , Zhang , J , Zhang , Z , Miller , W and Lipman , DJ . 1997 . Gapped BLAST and PSI-BLAST: a new generation of protein database search programs . Nucleic Acids Research , 25 : 3389 – 3402 .
   PubMed Web of Science ®Google Scholar
• Amit-Romach , E , Sklan , D and Uni , Z . 2004 . Microflora ecology of the chicken intestine using 16S ribosomal DNA primers . Poultry Science , 83 : 1093 – 1098 .
   PubMed Web of Science ®Google Scholar
• Apajalahti , JH , Sarkilahti , ALK , Maki , BRE , Heikkinen , JP , Nurminen , PH and Holben , HE . 1998 . Effective recovery of bacterial DNA and percent-guanine-plus-cytosine-based analysis of community structure in the gastrointestinal tract of broiler chickens . Applied and Environmental Microbiology , 64 : 4084 – 4088 .
   PubMed Web of Science ®Google Scholar
• Bull , SA , Allen , VM , Domingue , G , Jorgensen , F , Frost , JA , Ure , R , Whyte , R , Tinker , D , Corry , JEL , Gillard-King , J and Humphrey , TJ . 2006 . Sources of Campylobacter spp. colonizing housed broiler flocks during rearing . Applied and Environmental Microbiology , 72 : 645 – 652 .
   PubMed Web of Science ®Google Scholar
• Celinska , E and Grajek , W . 2009 . Biotechnological production of 2,3-butanediol – current state and prospects . Biotechnology Advances , 27 : 715 – 725 .
   PubMed Web of Science ®Google Scholar
• Collins , RP . 1976 . Terpenes and odoriferous materials from microorganisms . Lloydia , 39 : 20 – 24 .
   Google Scholar
• Cotta , MA , Whitehead , TR , Collins , MD and Lawson , PA . 2004 . Atopostipes suicloacale gen. nov., sp. nov., isolated from an underground swine manure storage pit . Anaerobe , 10 : 191 – 195 .
   PubMed Web of Science ®Google Scholar
• Cuer , A , Dauphin , G , Kergomard , A , Dumont , JP and Adda , J . 1979 . Production of S-methylthioacetate by Brevibacterium linens . Applied and Environmental Microbiology , 38 : 332 – 334 .
   PubMed Web of Science ®Google Scholar
• Davis , M and Morishita , TY . 2005 . Relative ammonia concentrations, dust concentrations, and presence of Salmonella species and Escherichia coli inside and outside commercial layer facilities . Avian Diseases , 49 : 30 – 35 .
   PubMed Web of Science ®Google Scholar
• Deetae , P , Bonnarme , P , Spinnler , HE and Helinck , S . 2007 . Production of volatile aroma compounds by bacterial strains isolated from different surface-ripened French cheeses . Applied Microbiology and Biotechnology , 76 : 1161 – 1171 .
   PubMed Web of Science ®Google Scholar
• Elliot , HA and Collins , NE . 1982 . Factors affecting ammonia release in broiler houses . Transactions of the ASAE , 25 : 413 – 424 .
   Google Scholar
• Enticknap , JJ , Nonogaki , H , Place , AR and Hill , RT . 2006 . Microbial diversity associated with odour modification for production of fertilizers from chicken litter . Applied and Environmental Microbiology , 72 : 4105 – 4114 .
   PubMed Web of Science ®Google Scholar
• Fries , R , Akcan , M , Bandick , N and Kobe , A . 2005 . Microflora of two different types of poultry litter . British Poultry Science , 46 : 668 – 672 .
   PubMed Web of Science ®Google Scholar
• GOTTSCHALK, G. (1985) Bacterial metabolism (Springer-Verlag)
   Google Scholar
• Halim , AF , Narciso , JA and Collins , RP . 1975 . Odorous constituents of Penicillium decumbens . Mycologia , 67 : 1158 – 1165 .
   PubMed Web of Science ®Google Scholar
• Hobbs , PJ , Webb , J , Mottram , TT , Grant , B and Misselbrook , TM . 2004 . Emissions of volatile organic compounds originating from UK livestock agriculture . Journal of the Science of Food and Agriculture , 84 : 1414 – 1420 .
   Web of Science ®Google Scholar
• Hyppel , A . 1984 . “ Fingerprint of a mould odor ” . In Indoor Air , Edited by: Berglund , B. , Lindvall , T. and Sundell , J. Vol. 3 , 443 – 447 . Stockholm : Swedish Council for Building Research .
   Google Scholar
• Jollivet , N , Bezenger , M-C , Vayssier , Y and Belin , J-M . 1992 . Production of volatile compounds in liquid cultures by six strains of coryneform bacteria . Applied Microbiology and Biotechnology , 36 : 790 – 794 .
   Web of Science ®Google Scholar
• Kaminski , E , Stawicki , ST , Wasowicz , E and Kasperek , M . 1974 . Volatile flavour compounds produced by molds of Aspergillus, Penicillium and Fungi imperfecti . Applied Microbiology , 27 : 1001 – 1004 .
   PubMedGoogle Scholar
• Lane , DJ . 1991 . “ 16S/23S rRNA sequencing ” . In Nucleic Acid Techniques in Bacterial Systematics , Edited by: Stackebrandt , E. and Goodfellow , M. 115 – 175 . New York : John Wiley & Sons .
   Google Scholar
• Liu , Z , Wang , L , Beasley , D and Oviedo , E . 2007 . Effect of moisture content on ammonia emissions from broiler litter: a laboratory study . Journal of Atmospheric Chemistry , 58 : 41 – 53 .
   Web of Science ®Google Scholar
• Lovanh , N , Cook , KL , Rothrock , MJ , Miles , DM and Sistani , K . 2007 . Spatial shifts in microbial population structure within poultry litter associated with physicochemical properties . Poultry Science , 86 : 1840 – 1849 .
   PubMed Web of Science ®Google Scholar
• Lu , J , Idris , U , Harmon , B , Hofacre , C , Maurer , JJ and Lee , MD . 2003a . Diversity and succession of the intestinal bacterial community of the maturing broiler chicken . Applied and Environmental Microbiology , 69 : 6816 – 6824 .
   PubMed Web of Science ®Google Scholar
• Lu , J , Sanchez , S , Hofacre , C and Maurer , JJ . 2003b . Evaluation of broiler litter with reference to the microbial composition as assessed by using 16S rRNA and functional gene markers . Applied and Environmental Microbiology , 69 : 901 – 908 .
   PubMed Web of Science ®Google Scholar
• Manefield , M , Griffiths , RI , Leigh , MB , Fisher , R and Whiteley , AS . 2005 . Functional and compositional comparison of two activated sludge communities remediating coking effluent . Environmental Microbiology , 7 : 715 – 722 .
   PubMed Web of Science ®Google Scholar
• Martin , SA , McCann , MA and Waltman , WD . 1998 . Microbiological survey of Georgia poultry litter . Journal of Applied Poultry Research , 7 : 90 – 98 .
   Web of Science ®Google Scholar
• Mattheis , JP and Roberts , RG . 1992 . Identification of geosmin as a volatile metabolite of Penicillium expansum . Applied Environmental Microbiology , 58 : 3170 – 3172 .
   PubMed Web of Science ®Google Scholar
• MCGAHAN, E, KOLOMINSKAS, C., BAWDEN, K. & ORMEROD, R. (2002) Strategies to reduce odour emissions from meat chicken farms. Proceedings of the 2002 Poultry Information Exchange, Gold Coast
   Google Scholar
• Olanrewaju , HA , Miller , WW , Maslin , WR and Thaxton , JP . 2007 . Interactive effects of ammonia and light intensity on ocular, fear and leg health in broiler chickens . International Journal of Poultry Science , 6 : 762 – 769 .
   Google Scholar
• Ouwerkerk , D and Klieve , AV . 2001 . Bacterial diversity within feedlot manure . Anaerobe , 7 : 59 – 66 .
   Web of Science ®Google Scholar
• PARCSI, G. (2010) Chemical analysis of odorants from poultry facilities. Ph. D. Thesis, University of New South Wales
   Google Scholar
• Salanitro , JP , Blake , IG , Muirhead , PA , Maglio , M and Goodman , JR . 1978 . Bacteria isolated from the duodenum, ileum, and cecum of young chicks . Applied and Environmental Microbiology , 35 : 782 – 790 .
   PubMed Web of Science ®Google Scholar
• Schefferle , HE . 1965 . The decomposition of uric acid in built-up poultry litter . Journal of Applied Bacteriology , 28 : 412 – 420 .
   PubMedGoogle Scholar
• Simons, J. (2010) Trials of odour control technologies on broiler farms. A Report for the Rural Industries Research and Development Corporation Report (RIRDC publication no: 10/102)
   Google Scholar
• STANDARDS AUSTRALIA (2003) Composts, soil conditioners and mulches. Standards Australia International (AS 4454-2003)
   Google Scholar
• Steiner , S , Erdmann , D , Steidle , JLM and Ruther , J . 2007 . Host habitat assessment by a parasitoid using fungal volatiles . Frontiers in Zoology , 4 : 3 – 13 .
   PubMed Web of Science ®Google Scholar
• Stotzky , G and Schenck , S . 1976 . Volatile organic compounds and microorganisms . Critical Reviews in Microbiology , 4 : 333 – 382 .
   Google Scholar
• Vesonder , RF , Lambert , R , Wicklow , DT and Bielhl , ML . 1988 . Eurotium spp. and echinulin in feed refused by swine . Applied and Environmental Microbiology , 54 : 830 – 831 .
   PubMed Web of Science ®Google Scholar
• White , TJ , Bruns , T , Lee , S and Taylor , J . 1990 . “ Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics ” . In PCR Protocols: A Guide to Methods and Applications , Edited by: Innis , M.A. , Gelfand , D.H. , Shinsky , J.J. and White , T.J. 315 – 322 . San Diego : Academic Press .
   Google Scholar
• Whiteley , A and Bailey , MJ . 2000 . Bacterial community structure and physiological state within an industrial phenol bioremediation system . Applied Environmental Microbiology , 66 : 2400 – 2407 .
   PubMed Web of Science ®Google Scholar