743
Views
11
CrossRef citations to date
0
Altmetric
Genetics

Genetic characterisation and analysis of infectious bronchitis virus isolated from Brazilian flocks between 2010 and 2015

, , , , , , , & show all
Pages 610-623 | Received 31 Jan 2017, Accepted 24 Jul 2017, Published online: 17 Oct 2017

References

  • Abd El Rahman, S., A. El-Kenawy, U. Neumann, G. Herrler, and C. Winter. 2009. “Comparative Analysis of the Sialic Acid Binding Activity and the Tropism for the Respiratory Epithelium of Four Different Strains of Avian Infectious Bronchitis Virus.” Avian Pathology 38: 41–45. doi:10.1080/03079450802632049.
  • Abreu, J., M. Mourão, C. Santos, C. Veloso, J. Resende, R. Flatschar, A. Folgeras-Flatschart Jr., et al. 2010. “Molecular Studies of the Brazilian Infectious Bronchitis Virus Isolates.” Brazilian Journal of Poultry Science 12: 107–110.
  • Abro, S. H., L. H. M. Renström, K. Ullman, M. Isaksson, S. Zohari, D. S. Jansson, S. Belák, and C. Baule. 2012a. “Emergence of Novel Strains of Avian Infectious Bronchitis Virus in Sweden.” Veterinary Microbiology 155: 237–246. doi:10.1016/j.vetmic.2011.09.022.
  • Abro, S. H., K. Ullman, S. Belák, and C. Baule. 2012b. “Bioinformatics and Evolutionary Insight on the Spike Glycoprotein Gene of QX-like and Massachusetts Strains of Infectious Bronchitis Virus.” Virology Journal 9: 211. doi:10.1186/1743-422X-9-211.
  • Balestrin, E., A. P. Fraga, N. Ikuta, C. W. Canal, S. K. Fonseca, and V. R. Lunge. 2014. “Infectious Bronchitis Virus in Different Avian Physiological Systems - a Field Study in Brazilian Poultry Flocks.” Poulty Science 93: 1922–1929. doi:10.3382/ps.2014-03875.
  • Brian, D. A., and R. S. Baric. 2005. “Coronavirus Genome Structure and Replication.” Current Topics in Microbiology and Immunology 287: 1–30.
  • Casais, R., B. Dove, D. Cavanagh, and P. Britton. 2003. “Recombinant Avian Infectious Bronchitis Virus Expressing a Heterologous Spike Gene Demonstrates that the Spike Protein Is a Determinant of Cell Tropism.” Journal of Virology 77: 9084–9089. doi:10.1128/JVI.77.16.9084-9089.2003.
  • Cavanagh, D. 2007. “Coronavirus Avian Infectious Bronchitis Virus.” Veterinary Research 38: 281–297. doi:10.1051/vetres:2006055.
  • Cavanagh, D., K. Mawditt, P. Britton, and C. J. Naylor. 1999. “Longitudinal Field Studies of Infectious Bronchitis Virus and Avian Pneumovirus in Broilers Using Type-Specific Polymerase Chain Reactions.” Avian Pathology 28: 593–605. doi:10.1080/03079459994399.
  • Cavanagh, D., K. Mawditt, D. D. B. Welchman, P. Britton, and R. E. Gough. 2002. “Coronaviruses from Pheasants (Phasianus Colchicus) are Genetically Closely Related to Coronaviruses of Domestic Fowl (Infectious Bronchitis Virus) and Turkeys.” Avian Pathology 31: 81–93. doi:10.1080/03079450120106651.
  • Chacon, J. L., M. S. Assayag Jr., L. Revolledo, C. S. Astolfi-Ferreira, M. P. Vejarano, R. C. Jones, and A. J. Piantino Ferreira. 2014. “Pathogenicity and Molecular Characteristics of Infectious Bronchitis Virus (IBV) Strains Isolated from Broilers Showing Diarrhoea and Respiratory Disease.” British Poultry Science 55: 271–283. doi:10.1080/00071668.2014.903558.
  • Chacon, J. L., J. N. Rodrigues, M. S. Assayag Jr., C. Peloso, A. C. Pedroso, and A. J. P. Ferreira. 2011. “Epidemiological Survey and Molecular Characterization of Avian Infectious Bronchitis Virus in Brazil between 2003 and 2009.” Avian Pathology 40: 153–162. doi:10.1080/03079457.2010.544641.
  • De Groot, R. J., S. C. Baker, R. Baric, L. Enjuanes, A. E. Gorbalenya, K. V. Holmes, S. Perlman, L. L. Poon, P. J. M. Rottier, and P. J. Talbot. 2012. “Family Coronaviridae.” In Virus Taxonomy, Ninth Report of the International Committee on Taxonomy of Viruses, edited by A. M. Q. King, M. J. Adams, E. B. Carstens, and E. J. Lefkowitz, 91. Vol. 806. Amsterdam: Elsevier Academic Press.
  • de Groot, R. J., S. C. Baker, R. S. Baric, C. S. Brown, C. Drosten, L. Enjuanes, R. A. M. Fouchier, et al. 2013. “Middle East Respiratory Syndrome Coronavirus (Mers-Cov); Announcement of the Coronavirus Study Group.” Journal of Virology 5: 13–15.
  • de Haan, C. A. M., M. de Wit, L. Kuo, C. Montalto-Morrison, B. L. Haagmans, S. R. Weiss, P. S. Masters, and P. J. M. Rottier. 2003. “The Glycosylation Status of the Murine Hepatitis Coronavirus M Protein Affects the Interferogenic Capacity of the Virus in Vitro and Its Ability to Replicate in the Liver but Not the Brain.” Virology 312: 395–406. doi:10.1016/S0042-6822(03)00235-6.
  • de Wit, J. J. 2000. “Detection of Infectious Bronchitis Virus.” Avian Pathology 29: 71–93. doi:10.1080/03079450094108.
  • de Wit, J. J., J. K. A. Cook, and H. M. J. F. van der Heijden. 2011. “Infectious Bronchitis Virus Variants: A Review of the History, Current Situation and Control Measures.” Avian Pathology 40: 223–235. doi:10.1080/03079457.2011.566260.
  • Di Fabio, J., L. I. Rossini, S. J. Orbell, G. Paul, M. B. Huggins, A. Malo, B. G. Silva, and J. K. Cook. 2000. “Characterization of Infectious Bronchitis Viruses Isolated from Outbreaks of Disease in Commercial Flocks in Brazil.” Avian Diseases 44: 582–589. doi:10.2307/1593097.
  • Dolz, R., J. Pujols, G. Ordóñez, R. Porta, and N. Majó. 2008. “Molecular Epidemiology and Evolution of Avian Infectious Bronchitis Virus in Spain over a Fourteen-Year Period.” Virology 374: 50–59. doi:10.1016/j.virol.2007.12.020.
  • Felippe, P. N., L. H. da Silva, M. M. Santos, F. R. Spilki, and C. W. Arns. 2010. “Genetic Diversity of Avian Infectious Bronchitis Virus Isolated from Domestic Chicken Flocks and Coronaviruses from Feral Pigeons in Brazil between 2003 and 2009.” Avian Diseases 54: 1191–1196. doi:10.1637/9371-041510-Reg.1.
  • Fraga, A. P., E. Balestrin, N. Ikuta, A. S. K. Fonseca, F. R. Spilki, C. W. Canal, and V. R. Lunge. 2013. “Emergence of a New Genotype of Avian Infectious Bronchitis Virus in Brazil.” Avian Diseases 57: 225–232. doi:10.1637/10346-090412-Reg.1.
  • Ganapathy, K., M. Wilkins, A. Forrester, S. Lemiere, T. Cserep, P. McMullin, and R. C. Jones. 2012. “QX-like Infectious Bronchitis Virus Isolated from Proventriculitis in Commercial Broilers in England.” Veterinary Record 171: 597. doi:10.1136/vr.101005.
  • González, J. M., P. Gomez-Puertas, D. Cavanagh, A. E. Gorbalenya, and L. A. Enjuanes. 2003. “Comparative Sequence Analysis to Revise the Current Taxonomy of the Family Coronaviridae.” Archives of Virology 148: 2207–2235. doi:10.1007/s00705-003-0162-1.
  • Heininger, U., N. S. Bachtiar, P. Bahri, A. Dana, A. Dodoo, J. Gidudu, and E. M. Santos. 2012. “The Concept of Vaccination Failure.” Vaccine 30: 1265–1268. doi:10.1016/j.vaccine.2011.12.048.
  • Hipólito, O. 1957. “Isolamento E Identificação Do Vírus Da Bronquite Infecciosa Em Galinhas No Brasil.” Arquivo Da Escola De Veterinária 10: 131–135.
  • Kant, A., G. Koch, D. J. van Roozelaar, J. G. Kusters, F. A. J. Poelwijk, and B. A. M. van der Zeijst. 1992. “Location of Antigenic Sites Defined by Neutralizing Monoclonal Antibodies on the S1 Avian Infectious Bronchitis Virus Glycopolypeptide.” Journal of General Virology 73: 591–596. doi:10.1099/0022-1317-73-3-591.
  • Kint, J., A. Dickhout, J. Kutter, H. J. Maier, P. Britton, J. Koumans, G. P. Pijlman, J. J. Fros, G. F. Wiegertjes, and M. Forlenza. 2015. “Infectious Bronchitis Coronavirus Inhibits STAT1 Signaling and Requires Accessory Proteins for Resistance to Type I Interferon Activity.” Journal of Virology 89: 12047–12057. doi:10.1128/JVI.01057-15.
  • Kuliwaba, J. S., N. L. Fazzalari, and D. Findlay. 2005. “Stability of RNA Isolated from Human Trabecular Bone at Post-Mortem and Surgery.” Biochimica Et Biophysica Acta - Molecular Basis of Disease 1740: 1–11. doi:10.1016/j.bbadis.2005.03.005.
  • Kumlin, U., S. Olofsson, K. Dimock, and N. Amberg. 2008. “Sialic Acid Tissue Distribution and Influenza Virus Tropism.” Influenza and Other Respiratory Viruses 2: 147–154. doi:10.1111/j.1750-2659.2008.00051.x.
  • Kwon, H. M., and M. W. Jackwood. 1995. “Molecular Cloning and Sequence Comparison of the S1 Glycoprotein of the Gray and JMK Strains of Avian Infectious Bronchitis Virus.” Virus Genes 9: 219–229. doi:10.1007/BF01702878.
  • Li, K., T. Schuler, Z. Chen, G. E. Glass, J. E. Childs, and P. G. Plagemann. 2000. “Isolation of Lactate Dehydrogenase-Elevating Viruses from Wild House Mice and Their Biological and Molecular Characterizatio.” Virus Research 67: 153–162. doi:10.1016/S0168-1702(00)00142-8.
  • Licitra, B. N., J. K. Millet, A. D. Regan, B. S. Hamilton, V. D. Rinaldi, G. E. Duhamel, and G. R. Whittaker. 2013. “Mutation in Spike Protein Cleavage Site and Pathogenesis of Feline Coronavirus.” Emerging Infectious Diseases 19: 1066–1073. doi:10.3201/eid1907.121094.
  • Liu, S. W., Q. X. Zhang, J. D. Chen, Z. X. Han, X. Liu, L. Feng, Y. H. Shao, J. G. Rong, X. G. Kong, and G. Z. Tong. 2006. “Genetic Diversity of Avian Infectious Bronchitis Coronavirus Strains Isolated in China between 1995 and 2004.” Archives of Virology 151: 1133–1148. doi:10.1007/s00705-005-0695-6.
  • Marandino, A., A. Pereda, G. Tomás, M. Hernández, G. Iraola, M. I. Craig, D. Hernández, et al. 2015. “Phylodynamic Analysis of Avian Infectious Bronchitis Virus in South America.” Journal of General Virology 96: 1340–1346. doi:10.1099/vir.0.000077.
  • Masters, P. S. 2006. “The Molecular Biology of Coronaviruses.” Advances in Virus Research 65: 193–292.
  • Masters, P. S., and S. Perlman. 2013. “Coronaviridae.” In Fields Virology. 6th ed., edited by D. M. Knipe and P. M. Howley, 825–859. [s.l.] Philadelphia, PA: Wolters Kluwer.
  • McKinley, E. T., M. W. Jackwood, D. A. Hilt, J. C. Kissinger, J. S. Robertson, C. Lemke, and A. H. Paterson. 2011. “Attenuated Live Vaccine Usage Affects Accurate Measures of Virus Diversity and Mutation Rates in Avian Coronavirus Infectious Bronchitis Virus.” Virus Research 158: 225–234. doi:10.1016/j.virusres.2011.04.006.
  • Neuman, B. W., P. Chamberlain, F. Bowden, and J. Joseph. 2014. “Atlas of Coronavirus Replicase Structure.” Virus Research 194: 49–66. doi:10.1016/j.virusres.2013.12.004.
  • Posada, D. 2008. “jModelTest: Phylogenetic Model Averaging.” Molecular Biology and Evolution 25: 1253–1256. doi:10.1093/molbev/msn083.
  • Roh, H.-J., D. A. Hilt, S. M. Williams, and M. W. Jackwood. 2013. “Evaluation of Infectious Bronchitis Virus Arkansas-Type Vaccine Failure in Commercial Broilers.” Avian Diseases 57: 248–259. doi:10.1637/10459-112812-Reg.1.
  • Schalk, A. F., and M. C. Hawn. 1931. “An Apparently New Respiratory Disease of Baby Chicks.” Journal of American Veterinary Medical Association 78: 413–422.
  • Silva, E. 2010. “Infectious Bronchitis in Brazilian Chickens: Current Data and Observations of Field Service Personnel.” Brazilian Journal of Poultry Science 12: 197–203.
  • Slater-Handshy, T., D. A. Droll, X. Fan, A. M. Di Bisceglie, and T. J. Chambers. 2004. “HCV E2 Glycoprotein: Mutagenesis of N-Linked Glycosylation Sites and Its Effects on E2 Expression and Processing.” Virology 319: 36–48. doi:10.1016/j.virol.2003.10.008.
  • Tamura, K., G. Stecher, D. Peterson, A. Filipski, and S. Kumar. 2013. “MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0.” Molecular Biology and Evolution 30: 2725–2729. doi:10.1093/molbev/mst197.
  • Thompson, J. D., F. Plewniak, and O. Poch. 1999. “A Comprehensive Comparison of Multiple Sequence Alignment Programs.” Nucleic Acids Research 27: 2682–2690. doi:10.1093/nar/27.13.2682.
  • Torres, C. A., L. Y. B. Villarreal, G. R. R. Ayres, L. J. Richtzenhain, and P. E. Brandao. 2013. “An Avian Coronavirus in Quail with Respiratory and Reproductive Signs.” Avian Diseases 57: 295–299. doi:10.1637/10412-100412-Reg.1.
  • Valastro, V., E. C. Holmes, P. Britton, A. Fusaro, M. W. Jackwood, G. Cattoli, and I. Monne. 2016. “S1 Gene-Based Phylogeny of Infectious Bronchitis Virus: An Attempt to Harmonize Virus Classification.” Infection, Genetics and Evolution 39: 349–364. doi:10.1016/j.meegid.2016.02.015.
  • Villarreal, L. Y., P. E. Brandao, J. L. Chacón, A. B. Saidenberg, M. S. Assayag Jr., R. C. Jones, and A. J. Ferreira. 2007. “Molecular Characterization of Infectious Bronchitis Virus Strains Isolated from the Enteric Contents of Brazilian Laying Hens and Broilers.” Avian Diseases 51: 974–978. doi:10.1637/7983-041307.1.
  • Villarreal, L. Y. B., T. L. Sandri, S. P. Souza, L. J. Richtzenhain, J. J. de Wit, and P. E. Brandao. 2010. “Molecular Epidemiology of Avian Infectious Bronchitis in Brazil from 2007 to 2008 in Breeders, Broilers, and Layers.” Avian Diseases 54: 894–898. doi:10.1637/9218-121709-Reg.1.
  • Wickramasinghe, I. N., S. J. van Beurden, E. A. Weerts, and M. H. Verheije. 2014. “The Avian Coronavirus Spike Protein.” Virus Research 194: 37–48. doi:10.1016/j.virusres.2014.10.009.
  • Wissing, E. H., M. V. Kroese, J. G. Maneschijn-Bonsing, J. J. Meulenberg, P. A. van Rijn, F. A. Rijsewijk, and P. J. Rottier. 2004. “Significance of the Oligosaccharides of the Porcine Reproductive and Respiratory Syndrome Virus Glycoproteins GP2a and GP5 for Infectious Virus Production.” Journal of General Virology 85: 3715–3723. doi:10.1099/vir.0.80402-0.
  • Woo, P. C., S. K. Lau, C. S. Lam, K. K. Lai, Y. Huang, P. Lee, G. S. Luk, K. C. Dyrting, K. H. Chan, and K. Y. Yuen. 2009. “Comparative Analysis of Complete Genome Sequences of Three Avian Coronaviruses Reveals a Novel Group 3c Coronavirus.” Journal of Virology 83: 908–917. doi:10.1128/JVI.01977-08.
  • Ziebuhr, J. 2005. “The Coronavirus Replicase.” Current Topics in Microbiology and Immunology 287: 57–94.

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.