Genetic diversity of Jiangsu native chicken breeds assessed with the mitochondrial DNA D-loop region

References

• Bandelt, H. J., P. Forster, and A. Röhl. 1999. “Median-Joining Networks for Inferring Intraspecific Phylogenies.” Molecular Biology and Evolution 16: 37–48. doi:10.1093/oxfordjournals.molbev.a026036.
   PubMed Web of Science ®Google Scholar
• Berthouly-Salazar, C., X. Rognon, T. N. Van, M. Gély, C. V. Chi, M. Tixier-Boichard, B. Bed’hom, et al. 2010. “Vietnamese Chickens: A Gate towards Asian Genetic Diversity.” BMC Genetics 11:53.
   PubMed Web of Science ®Google Scholar
• Brown, J. R., A. T. Beckenbach, and M. J. Smith. 1992. “Mitochondrial DNA Length Variation and Heteroplasmy in Populations of White Sturgeon (Acipenser Transmontanus).” Genetics 132:221–228.
   PubMed Web of Science ®Google Scholar
• Chang, C. S., C. F. Chen, C. Berthouly-Salazar, O. Chazara, Y. P. Lee, C. M. Chang, K. H. Chang, B. Bedhom, and M. Tixier-Boichard. 2012. “A Global Analysis of Molecular Markers and Phenotypic Traits in Local Chicken Breeds in Taiwan.” Animal Genetics 43:172.
   PubMed Web of Science ®Google Scholar
• Chen, K. W. 2012. Animal Genetic Resources in China. Beijing: China Agriculture Press.
   Google Scholar
• Dana, N., H. J. Megens, R. P. M. A. Crooijmans, J. Mwacharo, M. A. M. Groenen, and J. A. M. Arendonk. 2011. “East Asian Contributions to Dutch Traditional and Western Commercial Chickens Inferred from mtDNA Analysis.” Animal Genetics 42: 125–133. doi:10.1111/j.1365-2052.2010.02134.x.
   PubMed Web of Science ®Google Scholar
• Gao, Y. S., X. X. Jia, X. J. Tang, Y. F. Fan, J. X. Lu, S. H. Huang, and M. J. Tang. 2017. “The Genetic Diversity of Chicken Breeds from Jiangxi, Assessed with BCDO2 and the Complete Mitochondrial DNA D-Loop Region.” PLoS One 12: e0173192. doi:10.1371/journal.pone.0173192.
   PubMed Web of Science ®Google Scholar
• Jia, X. X., X. J. Tang, J. X. Lu, Y. F. Fan, D. W. Chen, M. J. Tang, R. Gu., and Y. S. Gao. 2016. “The Investigation of Genetic Diversity and Evolution of Daweishan Mini Chicken Based on the Complete Mitochondrial (Mt)DNA D-Loop Region Sequence.” Mitochondrial DNA 27: 3001–3004.
   PubMed Web of Science ®Google Scholar
• Langford, S. M., S. Kraitsek, B. Baskerville, S. W. Y. Ho, and J. Gongora. 2013. “Australian and Pacific Contributions to the Genetic Diversity of Norfolk Island Feral Chickens.” BMC Genetics 14: 1–8. doi:10.1186/1471-2156-14-91.
   PubMed Web of Science ®Google Scholar
• Liao, Y. Y., G. S. Mo, J. L. Sun, F. Y. Wei, and D. J. Liao. 2016. “Genetic Diversity of Guangxi Chicken Breeds Assessed with Microsatellites and the Mitochondrial DNA D-Loop Region.” Molecular Biology Reports 43: 415–425. doi:10.1007/s11033-016-3976-0.
   PubMed Web of Science ®Google Scholar
• Librado, P., and J. Rozas. 2009. “DnaSP V5: A Software for Comprehensive Analysis of DNA Polymorphism Data.” Bioinformatics 25: 1451–1452. doi:10.1093/bioinformatics/btp187.
   PubMed Web of Science ®Google Scholar
• Liu, J. B., X. Z. Ding, Y. F. Zeng, Y. J. Yue, X. Guo, T. T. Guo, M. Chu, et al. 2016. “Genetic Diversity and Phylogenetic Evolution of Tibetan Sheep Based on mtDNA D-Loop Sequences.” PLoS One 11: e0159308. doi:10.1371/journal.pone.0159308.
   PubMed Web of Science ®Google Scholar
• Liu, Y. P., G. S. Wu, Y. G. Yao, Y. W. Miao, G. Lukart, M. Baig, A. Beja-Pereire, Z. L. Ding, M. G. Palanichamy, and Y. P. Zhang. 2006. “Multiple Maternal Origins of Chickens: Out of the Asian Jungles.” Molecular Phylogenetics & Evolution 38: 12–19. doi:10.1016/j.ympev.2005.09.014.
   PubMed Web of Science ®Google Scholar
• Luzuriaga-Neira, A., G. Villacís-Rivas, F. Cueva-Castillo, G. Escudero-Sánchez, A. Ulloa-Nuñez, M. Rubilar-Quezada, R. Monteiro, M. R. Miller, and A. Beja-Pereira. 2017. “On the Origins and Genetic Diversity of South American Chickens: One Step Closer.” Animal Genetics 48:353–357.
   PubMed Web of Science ®Google Scholar
• Miao, Y. 2013. “Genetic Diversity Analysis of Three Indigenous Chicken Populations in Yunnan Using mtDNA D-Loop Sequences”. Journal of Yunnan Agricultural University 30:395–401. In Chinese.
   Google Scholar
• Miao, Y. W., M. S. Peng, G. S. Wu, Y. N. Ouyang, Z. Y. Yang, N. Yu, J. P. Liang, et al. 2013. “Chicken Domestication: An Updated Perspective Based on Mitochondrial Genomes.” Heredity 110: 277–282. doi:10.1038/hdy.2012.83.
   PubMed Web of Science ®Google Scholar
• Mtileni, B. J., F. C. Muchadeyi, A. Maiwashe, M. Chimonyo, E. Groeneveld, S. Weigend, and K. Dzama. 2011. “Diversity and Origin of South African Chicken.” Poultry Science 90: 2189–2194. doi:10.3382/ps.2011-01505.
   PubMed Web of Science ®Google Scholar
• Ohno, S. (1997) The One Ancestor Per Generation Rule and Three Other Rules of Mitochondrial Inheritance. Proceedings of the National Academy of Sciences, 94: 8033–8035.
   PubMed Web of Science ®Google Scholar
• Osei-Amponsah, R., B. B. Kayang, A. Naazie, Y. D. Osei, I. A. Youssao, V. C. Yapi-Gnaore, M. Tixier-Boichard, and X. Rognon. 2010. “Genetic Diversity of Forest and Savannah Chicken Populations of Ghana as Estimated by Microsatellite Markers.” Animal Science Journal 81: 297–303. doi:10.1111/j.1740-0929.2010.00749.x.
   PubMed Web of Science ®Google Scholar
• Osman, S. A., T. Yonezawa, and M. Nishibori. 2016. “Origin and Genetic Diversity of Egyptian Native Chickens Based on Complete Sequence of Mitochondrial DNA D-Loop Region.” Poultry Science 95: 1248–1256. doi:10.3382/ps/pew029.
   PubMed Web of Science ®Google Scholar
• Su, Y. J., X. P. Sheng, and X. Y. Zhang. 2002. “The Survey of Small Swarm Breeds Conservation Effection”. China Poultry Science 24:10–11. In Chinese.
   Google Scholar
• Tamura, K., G. Stecher, D. Peterson, A. Filipski, and S. Kumar. 2013. “MEGA6: Molecular Evolutionary Genetics Analysis Version6.0.” Molecular Biology and Evolution 30: 2725–2729. doi:10.1093/molbev/mst197.
   PubMed Web of Science ®Google Scholar
• Vaarst, M., S. Steenfeldt, and K. Horsted. 2015. “Sustainable Development Perspectives of Poultry Production.” Worlds Poultry Science Journal 71: 609–620. doi:10.1017/S0043933915002433.
   Web of Science ®Google Scholar
• Zhang, L., P. Zhang, Q. P. Li, U. Gaur, Y. P. Liu, Q. Zhu, X. L. Zhao, et al. 2017. “Genetic Evidence from Mitochondrial DNA Corroborates the Origin of Tibetan Chickens.” PLoS One 12: e0172945. doi:10.1371/journal.pone.0172945.
   PubMed Web of Science ®Google Scholar
• Zheng, M. Q., G. F. Gong, and H. J. Gao (2016) The Monitoring Report of Poultry Industry Development in 2015. China Poultry Science, 38:67–70. ( In Chinese)
   Google Scholar