Cloning, expression and bioinformatics analysis of a putative pigeon melanoma differentiation-associated gene 5

References

• Abolnik, C. 2014. “A Current Review of Avian Influenza in Pigeons and Doves (Columbidae).” Veterinary Microbiology 170 (3–4): 181–196. doi:10.1016/j.vetmic.2014.02.042.
   PubMed Web of Science ®Google Scholar
• Akhrymuk, I., I. Frolov, and E. I. Frolova. 2015. “Both RIG-I and MDA5 Detect Alphavirus Replication in Concentration-Dependent Mode.” Virology 487 (1): 230–241. doi:10.1016/j.virol.2015.09.023.
   PubMedGoogle Scholar
• Akira, S., and K. Takeda. 2004. “Toll-Like Receptor Signalling.” Nature Reviews Immunology 4 (7): 499–511. doi:10.1038/nri1391.
   PubMed Web of Science ®Google Scholar
• Bamming, D., and C. M. Horvath. 2009. “Regulation of Signal Transduction by Enzymatically Inactive Antiviral RNA Helicase Proteins MDA5, RIG-I, and LGP2.” Journal of Biological Chemistry 284 (15): 9700–9712. doi:10.1074/jbc.M807365200.
   PubMed Web of Science ®Google Scholar
• Cordin, O., J. Banroques, N. K. Tanner, and P. Linder. 2006. “The DEAD-box Protein Family of RNA Helicases.” Gene 367 (1): 17–37. doi:10.1016/j.gene.2005.10.019.
   PubMedGoogle Scholar
• Dang, W., L. Xu, Y. Yin, S. Chen, W. Wang, M. S. Hakim, K. Chang, M. P. Peppelenbosch, and Q. Pan. 2018. “IRF-1, RIG-I and MDA5 Display Potent Antiviral Activities against Norovirus Coordinately Induced by Different Types of Interferons.” Antiviral Research 155: 48–59. doi:10.1016/j.antiviral.2018.05.004.
   PubMed Web of Science ®Google Scholar
• Gabor, K. A., J. R. Charett, M. J. Pietraszewski, D. J. Wingfield, J. S. Shim, P. J. Millard, and C. H. Kim. 2015. “A DN-Mda5 Transgenic Zebrafish Model Demonstrates that Mda5 Plays an Important Role in Snakehead Rhabdovirus Resistance.” Developmental and Comparative Immunology 51: 298–304. doi:10.1016/j.dci.2015.01.006.
   PubMed Web of Science ®Google Scholar
• Gale, C. P., and P. J. Grant. 2004. “The Characterisation and Functional Analysis of the Human Glyoxalase-1 Gene Using Methods of Bioinformatics.” Gene 340 (2): 251–260. doi:10.1016/j.gene.2004.07.009.
   PubMed Web of Science ®Google Scholar
• Gao, B., W. I. Jeong, and Z. Tian. 2008. “Liver: An Organ with Predominant Innate Immunity.” Hepatology 47 (2): 729–736. doi:10.1002/hep.22034.
   PubMed Web of Science ®Google Scholar
• Hayashi, T., Y. Hiromoto, K. Chaichoune, T. Patchimasiri, W. Chakritbudsa-Bong, N. Prayoonwon, W. Wiriyarat, et al. 2011. “Host Cytokine Responses of Pigeons Infected with Highly Pathogenic Thai Avian Influenza Viruses of Subtype H5N1 Isolated from Wild Birds.” PloS One 6 (8): 1–13. doi:10.1371/journal.pone.0023103.
   Web of Science ®Google Scholar
• Huang, Y., Y. Yu, Y. Yang, M. Yang, L. Zhou, X. Huang, and Q. Qin. 2016. “Antiviral Function of Grouper MDA5 against Iridovirus and Nodavirus.” Fish & Shellfish Immunology 54: 188–196. doi:10.1016/j.fsi.2016.04.001.
   PubMed Web of Science ®Google Scholar
• Jiang, F., A. Ramanathan, M. T. Miller, G. Q. Tang, M. Gale, S. S. Patel, and J. Marcotrigiano. 2011. “Structural Basis of RNA Recognition and Activation by Innate Immune Receptor RIG-I.” Nature 479 (7373): 423–427. doi:10.1038/nature10537.
   PubMed Web of Science ®Google Scholar
• Karpala, A. J., C. Stewart, J. McKay, J. W. Lowenthal, and A. G. Bean. 2011. “Characterisation of Chicken Mda5 Activity: Regulation of IFN-βin the Absence of RIG-I Functionality.” Journal of Immunology 186 (9): 5397–5405. doi:10.4049/jimmunol.1003712.
   PubMed Web of Science ®Google Scholar
• Kato, H., O. Takeuchi, E. Mikamo-Satoh, R. Hirai, T. Kawai, K. Matsushita, A. Hiiragi, T. S. Dermody, T. Fujita, and S. Akira. 2008. “Length-Dependent Recognition of Double-Stranded Ribonucleic Acids by Retinoic Acid-Inducible Gene-I and Melanoma Differentiation-Associated Gene 5.” Journal of Experimental Medicine 205 (7): 1601–1610. doi:10.1084/jem.20080091.
   PubMed Web of Science ®Google Scholar
• Kato, H., O. Takeuchi, S. Sato, M. Yoneyama, M. Yamamoto, K. Matsui, S. Uematsu, et al. 2006. “Differential Roles of MDA5 and RIG-I Helicases in the Recognition of RNA Viruses.” Nature 441 (7089): 101–105. doi:10.1038/nature04734.
   PubMed Web of Science ®Google Scholar
• Kawai, T., and S. Akira. 2007. “Antiviral Signaling through Pattern Recognition Receptors.” Journal of Biochemistry 141 (2): 137–145. doi:10.1093/jb/mvm032.
   PubMed Web of Science ®Google Scholar
• Kawai, T., and S. Akira. 2008. “Toll-Like Receptor and RIG-I-like Receptor Signaling.” Annals of the New York Academy of Sciences 1143: 1–20. doi:10.1196/annals.1443.020.
   PubMed Web of Science ®Google Scholar
• Kawai, T., and S. Akira. 2010. “The Role of Pattern-Recognition Receptors in Innate Immunity: Update on Toll-Like Receptors.” Nature Immunology 11 (5): 373–384. doi:10.1038/ni.1863.
   PubMed Web of Science ®Google Scholar
• Lee, C. C., C. C. Wu, and T. L. Lin. 2012. “Characterisation of Chicken Melanoma Differentiation-Associated Gene 5 (MDA5) from Alternative Translation Initiation.” Comparative Immunology Microbiology & Infectious Diseases 35 (4): 335–343. doi:10.1016/j.cimid.2012.02.004.
   PubMed Web of Science ®Google Scholar
• Lee, C. C., C. C. Wu, and T. L. Lin. 2014. “Chicken Melanoma Differentiation-Associated Gene 5 (MDA5) Recognizes Infectious Bursal Disease Virus Infection and Triggers MDA5-related Innate Immunity.” Archives of Virology 159 (7): 1671–1686. doi:10.1007/s00705-014-1983-9.
   PubMed Web of Science ®Google Scholar
• Lee, C. C., C. C. Wu, and T. L. Lin. 2015. “Role of Chicken Melanoma Differentiation-Associated Gene 5 in Induction and Activation of Innate and Adaptive Immune Responses to Infectious Bursal Disease Virus in Cultured Macrophages.” Archives of Virology 160 (12): 3021–3035. doi:10.1007/s00705-015-2612-y.
   PubMed Web of Science ®Google Scholar
• Li, Z., and A. Diehl. 2003. “Innate Immunity in the Liver.” Current Opinion in Gastroenterology 19 (6): 565. doi:10.1097/00001574-200311000-00009.
   PubMed Web of Science ®Google Scholar
• Lincez, P. J., I. Shanina, and M. S. Horwitz. 2015. “Reduced Expression of the MDA5 Gene IFIH1 Prevents Autoimmune Diabetes.” Diabetes 64 (6): 2184–2193. doi:10.2337/db14-1223.
   PubMed Web of Science ®Google Scholar
• Linder, P., and E. Jankowsky. 2011. “From Unwinding to Clamping – The DEAD Box RNA Helicase Family.” Nature Reviews Molecular Cell Biology 12: 505–516. doi:10.1038/nrm3154.
   PubMed Web of Science ®Google Scholar
• Liu, F., and J. Gu. 2011. “Retinoic Acid Inducible gene-I, More than a Virus Sensor.” Protein & Cell 2 (5): 351–357. doi:10.1007/s13238-011-1045-y.
   PubMed Web of Science ®Google Scholar
• Liu, J., J. Li, J. Xiao, H. Chen, L. Lu, X. Wang, Y. Tian, and H. Feng. 2017. “The Antiviral Signaling Mediated by Black Carp MDA5 Is Positively Regulated by LGP2.” Fish & Shellfish Immunology 66: 360–371. doi:10.1016/j.fsi.2017.05.035.
   PubMed Web of Science ®Google Scholar
• McCartney, S. A., L. B. Thackray, L. Gitlin, S. Gilfillan, H. W. Virgin, and M. Colonna. 2008. “MDA-5 Recognition of a Murine Norovirus.” PLoS Pathogens 4 (7): e1000108. doi:10.1371/journal.ppat.1000108.
   PubMed Web of Science ®Google Scholar
• Ohtani, M., J. Hikima, H. Kondo, I. Hirono, T. S. Jung, and T. Aoki. 2011. “Characterisation and Antiviral Function of a Cytosolic Sensor Gene, MDA5, in Japanese Flounder, Paralichthys Olivaceus.” Developmental & Comparative Immunology 35 (5): 554–562. doi:10.1016/j.dci.2010.12.013.
   PubMed Web of Science ®Google Scholar
• Onoguchi, K., M. Yoneyama, and T. Fujita. 2011. “Retinoic Acid-Inducible gene-I-like Receptors.” Journal of Interferon& Cytokine Research 31 (1): 27–31. doi:10.1089/jir.2010.0057.
   PubMed Web of Science ®Google Scholar
• Peisley, A., B. Wu, H. Yao, T. Walz, and S. Hur. 2013. “RIG-I Forms Signaling-Competent Filaments in an ATP-dependent, Ubiquitin-Independent Manner.” Molecular Cell 51 (5): 573–583. doi:10.1016/j.molcel.2013.07.024.
   PubMed Web of Science ®Google Scholar
• Pichlmair, A., O. Schulz, C. P. Tan, T. I. Näslund, P. Liljeström, F. Weber, and C. Reis E Sousa. 2006. “RIG-I-mediated Antiviral Responses to Single-Stranded RNA Bearing 5ʹ-Phosphates.” Science 314 (5801): 997–1001. doi:10.1126/science.1132998.
   PubMed Web of Science ®Google Scholar
• Ranjan, P., J. B. Bowzard, J. W. Schwerzmann, V. Jeisy-Scott, T. Fujita, and S. Sambhara. 2009. “Cytoplasmic Nucleic Acid Sensors in Antiviral Immunity.” Trends in Molecular Medicine 15 (8): 359–368. doi:10.1016/j.molmed.2009.06.003.
   PubMed Web of Science ®Google Scholar
• Saito, T., R. Hirai, Y. M. Loo, D. Owen, C. L. Johnson, S. C. Sinha, S. Akira, T. Fujita, and M. Gale Jr. 2007. “Regulation of Innate Antiviral Defenses through a Shared Repressor Domain in RIG-I and LGP2.” Proceedings of the National Academy of Sciences of the United States of America 104 (2): 582–587. doi:10.1073/pnas.0606699104.
   PubMed Web of Science ®Google Scholar
• Saito, T., D. M. Owen, F. Jiang, J. Marcotrigiano, and M. Gale. 2008. “Innate Immunity Induced by Composition-Dependent RIG-I Recognition of Hepatitis C Virus RNA.” Nature 454 (7203): 523–527. doi:10.1038/nature07106.
   PubMed Web of Science ®Google Scholar
• Satoh, T., H. Kato, Y. Kumagai, M. Yoneyama, S. Sato, K. Matsushita, T. Tsujimura, T. Fujita, S. Akira, and O. Takeuchi. 2010. “LGP2 Is a Positive Regulator of RIG-I- and MDA5-mediated Antiviral Responses.” Proceedings of the National Academy of Sciences of the United States of America 107 (4): 1512–1517. doi:10.1073/pnas.0912986107.
   Web of Science ®Google Scholar
• Su, J., T. Huang, J. Dong, J. Heng, R. Zhang, and L. Peng. 2010. “Molecular Cloning and Immune Responsive Expression of MDA5 Gene, a Pivotal Member of the RLR Gene Family from Grass Carp Ctenopharyngodon Idella.” Fish & Shellfish Immunology 28 (4): 712–718. doi:10.1016/j.fsi.2010.01.009.
   PubMed Web of Science ®Google Scholar
• Takahasi, K., M. Yoneyama, T. Nishihori, R. Hirai, H. Kumeta, R. Narita, G. Michael Jr., I. Fuyuhiko, and F. Takashi. 2008. “Nonself RNA-sensing Mechanism of RIG-I Helicase and Activation of Antiviral Immune Responses.” Molecular Cell 29 (4): 428–440. doi:10.1016/j.molcel.2007.11.028.
   PubMed Web of Science ®Google Scholar
• Wei, L., J. Cui, Y. Song, S. Zhang, F. Han, R. Yuan, L. Gong, P. Jiao, and M. Liao. 2014. “Duck MDA5 Functions in Innate Immunity against H5N1 Highly Pathogenic Avian Influenza Virus Infections.” Veterinary Research 45 (1): 66. doi:10.1186/1297-9716-45-66.
   PubMedGoogle Scholar
• Wei, L. M., P. R. Jiao, Y. F. Song, F. Han, L. Cao, F. Yang, T. Ren, and M. Liao. 2013. “Identification and Expression Profiling Analysis of Goose Melanoma Differentiation Associated Gene 5 (MDA5) Gene.” Poultry Science 92 (10): 2618–2624. doi:10.3382/ps.2013-03064.
   Web of Science ®Google Scholar
• Wu, Y., X. Wu, L. Wu, X. Wang, and Z. Liu. 2017. “The Anticancer Functions of RIG-I-like Receptors, RIG-I and MDA5, and Their Applications in Cancer Therapy.” Translational Research 190: 51–60. doi:10.1016/j.trsl.2017.08.004.
   PubMed Web of Science ®Google Scholar
• Yoneyama, M., and T. Fujita. 2010. “Recognition of Viral Nucleic Acids in Innate Immunity.” Reviews in Medical Virology 20 (1): 4–22. doi:10.1002/rmv.633.
   PubMed Web of Science ®Google Scholar
• Yoneyama, M., M. Kikuchi, T. Natsukawa, N. Shinobu, T. Imaizumi, M. Miyagishi, K. Taira, S. Akira, and T. Fujita. 2004. “The RNA Helicase RIG-I Has an Essential Function in Double-Stranded RNA-induced Innate Antiviral Responses.” Nature Immunology 5 (7): 730–737. doi:10.1038/ni1087.
   PubMed Web of Science ®Google Scholar