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Research Article

Identifying Diversity and Activities of Soil Microbes Using Pigmentation Patterns on Buried Cotton Strips: A Novel Approach

ORCID Icon, , &
Pages 2074-2087 | Received 08 Jan 2021, Accepted 12 Mar 2021, Published online: 12 Apr 2021

References

  • Anonymus. 1977. Methods of test for textiles- woven fabrics – determination of breaking strength and elongation (strip method). London, UK: British Standards Institution.
  • Anonymus. 1986. Determination of breaking strength and elongation (strip method) of woven fabrics. London, UK: British Standards Institution.
  • Avalos, J., and M. Carmen Limón. 2015. Biological roles of fungal carotenoids. Current Genetics 61 (3):309–24. Springer Berlin Heidelberg. doi:10.1007/s00294-014-0454-x.
  • Ayres, E., H. Steltzer, M. D. Sarah Berg, B. L. S. Wallenstein, D. H. Wall, and D. H. Wall. 2009. Tree species traits influence soil physical, chemical, and biological properties in high elevation forests. PLoS ONE 4:6. doi:10.1371/journal.pone.0005964.
  • SDSU Extension. 2019. 2019 South Dakota pest management guide: Wheat, a guide to managing weeds, insects, and diseases. Pierre: South Dakota Board of Regents.
  • Bacq-Labreuil, A., S. J. John Crawford, A. L. N. Mooney, and K. Ritz. 2019. Cover crop species have contrasting influence upon soil structural genesis and microbial community phenotype. Scientific Reports 9 (1):1–9. Springer US. doi:10.1038/s41598-019-43937-6.
  • Banerjee, A., S. Supakar, R. Banerjee, and V. Shah. 2014. Melanin from the Nitrogen-fixing bacterium azotobacter chroococcum: A spectroscopic characterization. PLoS ONE 9 (1):1–7. doi:10.1371/journal.pone.0084574.
  • Bates, D., M. Mächler, B. Bolker, and S. Walker. 2015. Fitting linear mixed-effects models using Lme4. Journal of Statistical Software 67 (1):1–48. doi:10.18637/jss.v067.i01.
  • Beguin, P., and J.-P. Aubert. 1994. The biological degradation of cellulose. FEMS Microbiology Reviews 13:25–58. doi:10.1111/j.1574-6976.1994.tb00033.x.
  • Dong, J., S. Wang, H. Niu, X. Cui, L. Linfeng, Z. Pang, S. Zhou, and K. Wang. 2020. Responses of soil microbes and their interactions with plant community after nitrogen and phosphorus addition in a tibetan alpine steppe. Journal of Soils and Sediments 20 (4):2236–47. doi:10.1007/s11368-020-02586-3.
  • Dufossé, L. 2006. Microbial production of food grade pigments. Food Technology and Biotechnology 44 (3):313–21.
  • Dufossé, L., M. Fouillaud, Y. Caro, S. A. S. Mapari, and N. Sutthiwong. 2014. Filamentous fungi are large-scale producers of pigments and colorants for the food industry. Current Opinion in Biotechnology 26:56–61. doi:10.1016/j.copbio.2013.09.007.
  • El-Naggar, N., E. Ahmady, S. M. El-Ewasy, S. M. El-Ewasy, and S. M. El-Ewasy. 2017. Bioproduction, characterization, anticancer and antioxidant activities of extracellular melanin pigment produced by newly isolated microbial cell factories streptomyces glaucescens NEAE-H. Scientific Reports 7. doi:10.1038/srep42129.
  • French, D. D. 1988a. Patterns of decomposition assessed by the use of litter bags and cotton strip assay on fertilized and unfertilised heather Moor in Scotland. In Cotton strip assay: An index of decomposition in soils, ed. A. F. Harrison, P. M. Latter, and D. W. H. Walton. 100–08. Cumbria: ITE, GRANGE-OVER-SANDS.
  • French, D. D. 1988b. Some effects of changing soil chemistry on decomposition of plant litters and cellulose on a Scottish Moor published by : Springer in cooperation with international association for ecology stable https://www.Jstor.Org/Stable/4218621 Some Effects Of . Oecologia 75 (4):608–18. doi:10.1007/BF00776427.
  • Garcia, C., A. Roldan, and T. Hernandez. 2005. Ability of different plant species to promote microbiological processes in semiarid soil. Geoderma 124 (1–2):193–202. doi:10.1016/j.geoderma.2004.04.013.
  • Grayston, S. J., S. Wang, C. D. Campbell, and A. C. Edwards. 1998. Selective influence of plant species on microbial diversity in the rhizosphere. Soil Biology & Biochemistry 30 (3):369–78. doi:10.1016/S0038-0717(97)00124-7.
  • Harrison, A. F., P. M. Latter, and D. W. H. Walton. 1988. In Cotton strip assay: An index of decomposition in soils, ed. A. F. Harrison, P. M. Latter, and D. W. H. Walton. 100–108. Cumbria: ITE, GRANGE-OVER-SANDS.
  • Heal, O. W., G. Howson, D. D. French, and J. N. R. Jeffers. 1974. Decomposition of cotton strips in Tundra. In Soil organisms and decomposition in Tundra, ed. P. W. Holding, A. J. Heal, O. W. McLean, and S. F. Flanagan, 341–62. Stockholm: Tundra Biome Steering Committee.
  • Houston, A. C. 1893. Note on the number of bacteria in the soil at different depths from the surface. Edinburgh Medical Journal 38 (12):1122–25. Oliver and Boyd.
  • Howard, P. J. A. 1988. A critical evaluation of the cotton strip assay. In Cotton Strip Assay: An Index of Decomposition in Soils, eds. A. F. Harrison, P. M. Latter, and D. W. H. Walton. 34–42. Cumbria: ITE, GRANGE-OVER-SANDS, Cumbria.
  • Huang, L., C. W. Riggins, S. Rodríguez-Zas, M. C. Zabaloy, and M. B. Villamil. 2019. Long-Term N fertilization imbalances potential N acquisition and transformations by soil microbes. Science of the Total Environment 691:562–71. Elsevier B.V. doi:10.1016/j.scitotenv.2019.07.154.
  • Klimek, B. 2012. Effect of Long-term zinc pollution on soil microbial community resistance to repeated contamination. Bulletin of Environmental Contamination and Toxicology 88 (4):617–22. doi:10.1007/s00128-012-0523-0.
  • Kuznetsova, A., P. B. Brockhoff, and H. B. C. Rune. 2017. LmerTest package: Tests in linear mixed effects models. Journal of Statistical Software 82 (13):1–26. doi:10.18637/jss.v082.i13.
  • Lê, S., J. Josse, and F. Husson. 2008. FactoMineR : An R package for multivariate analysis. Journal of Statistical Software 25 (1):1–18. doi:10.18637/jss.v025.i01.
  • Ladygina, N., and K. Hedlund. 2010. Plant species influence microbial diversity and carbon allocation in the rhizosphere. Soil Biology & Biochemistry 42 (2):162–68. Elsevier Ltd. doi:10.1016/j.soilbio.2009.10.009.
  • Latter, P. M., and G. Howson. 1977. The use of cotton strips to indicate celiulose decomposition in the field. In Pedobiologia, ed. Intergovernmental Panel on Climate Change, Vol. 17, 145–55. Cambridge: Cambridge University Press. doi:10.1017/CBO9781107415324.004
  • Latter, P. M., G. Bancroft, and J. Gillespie. 1988. Technical aspects of the cotton strip assay in soils. International Biodeterioration 24:25–47. doi:10.1016/j.ijthermalsci.2008.05.017.
  • Leschine, S. B. 1995. Cellulose degradation in anaerobic environments. Annual Review of Microbiology 49 (1):399–426. doi:10.1146/annurev.micro.49.1.399.
  • Li, F., M. Liu, L. Zhongpei, C. Jiang, F. Han, and Y. Che. 2013. Changes in soil microbial biomass and functional diversity with a nitrogen gradient in soil columns. Applied Soil Ecology 64 (2):1–6. Elsevier B.V. doi:10.1016/j.apsoil.2012.10.006.
  • Li, X. G., B. Jia, L. Jieting, M. Qiujin, Y. Kuzyakov, and F. M. Li. 2017. Nitrogen fertilization decreases the decomposition of soil organic matter and plant residues in planted soils. Soil Biology & Biochemistry 112:47–55. Elsevier Ltd. doi:10.1016/j.soilbio.2017.04.018.
  • Liang, X., E. Y. Jun Yuan, J. Meng, and J. Meng. 2017. Responses of soil organic carbon decomposition and microbial community to the addition of plant residues with different C:N ratio. European Journal of Soil Biology 82:50–55. Elsevier Masson SAS. doi:10.1016/j.ejsobi.2017.08.005.
  • Liu, L., F. S. Tao Zhang, P. G. Gilliam, W. Zhang, H. Chen, and M. Jiangming. 2013. Interactive effects of nitrogen and phosphorus on soil microbial communities in a tropical forest. ed. B. Bond-Lamberty. PLoS ONE 8 (4):e61188. doi:10.1371/journal.pone.0061188.
  • Nicolardot, B., S. Recous, and B. Mary. 2001. Simulation of C and N mineralisation during crop residue decomposition : A simple dynamic model based on the C : N ratio of the residues author (s): B. Nicolardot, S. Recous and B. Mary Source : Plant and Soil, Vol. 228, No. 1, THE 10TH INTERNA. Plant and Soil 228 (i):83–103. doi:10.1023/A:1004813801728.
  • Poeplau, C., A. M. Herrmann, and K. Thomas. 2016. Opposing effects of nitrogen and phosphorus on soil microbial metabolism and the implications for soil carbon storage. Soil Biology & Biochemistry 100:83–91. Elsevier Ltd. doi:10.1016/j.soilbio.2016.05.021.
  • R Core Team. 2020. R: A language and environment for statistical computing. Vienna, Austria: R Foundation for Statistical Computing. https://www.r-project.org/.
  • Rao, N., M. Prabhu, M. Xiao, and W. J. Li. 2017. Fungal and bacterial pigments: Secondary metabolites with wide applications. Frontiers in Microbiology 8 (JUN):1–13. doi:10.3389/fmicb.2017.01113.
  • Sagar, B. F. 1988. Microbial cellulases and their action on cotton fibres. In Cotton Strip Assay: An Index of Decomposition in Soils, eds. A. F. Harrison, P. M. Latter, and D. W. H. Walton. 17-20. Cumbria: ITE GRANGE-OVER-SANDS.
  • Siu, A. R. G. H., and E. T. Reese. 1953. Decomposition of cellulose by microorganisms. Botanical Review 19 (7):377–416. doi:10.1007/BF02861823.
  • Su, J. Q., L. J. Ding, K. Xue, H. Y. Yao, J. Quensen, S. J. Bai, W. X. Wei, J.-S. Wu, J. Zhou, J. M. Tiedje, et al. 2015. Long-term balanced fertilization increases the soil microbial functional diversity in a phosphorus-limited paddy soil. Molecular Ecology 24 (1):136–50. doi:10.1111/mec.13010.
  • Trouessart, E.L. 1886. Microbes, ferments and moulds, Vol. 57. Boston: D. Appleton and Company.
  • Turner, B. L., and S. Joseph Wright. 2014. The response of microbial biomass and hydrolytic enzymes to a decade of nitrogen, phosphorus, and potassium addition in a lowland tropical rain forest. Biogeochemistry 117 (1):115–30. doi:10.1007/s10533-013-9848-y.
  • Venil, C. K., Z. A. Zakaria, and W. A. Ahmad. 2013. Bacterial pigments and their applications. Process Biochemistry 48 (7):1065–79. Elsevier Ltd. doi:10.1016/j.procbio.2013.06.006.
  • Walton, D. W. H., and D. Allsopp. 1977. A new test cloth for soil burial trials & other studies on cellulose decomposition. International Biodeterioration Bulletin 4 (1):112–15.
  • Wan, X., Z. Huang, H. Zongming, Y. Zaipeng, M. R. D. Minhuang Wang, Y. Yang, and Y. Yang. 2014. Soil C:N ratio is the major determinant of soil microbial community structure in subtropical coniferous and broadleaf forest plantations. Plant and Soil 387 (1–2):103–16. doi:10.1007/s11104-014-2277-4.
  • Wyszkowska, J., A. Borowik, M. Kucharski, and J. Kucharski. 2013. Oddzia£ywanie Kadmu, Miedzi i Cynku Na Roœliny, Drobnoustroje i Enzymy Glebowe. Journal of Elementology 18 (4):769–96. doi:10.5601/jelem.2013.18.4.455.
  • Zhong, W., G. Ting, W. Wang, B. Zhang, X. Lin, Q. Huang, and W. Shen. 2010. The effects of mineral fertilizer and organic manure on soil microbial community and diversity. Plant and Soil 326 (1):511–22. doi:10.1007/s11104-009-9988-y.

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