Molecular phylogeny of the Aplodactylidae (Perciformes: Cirrhitoidea), a group of Southern Hemisphere marine fishes

References

• Andrew , T. G. , Hecht , T. , Heemstra , P. C. and Lutjeharms , J. R. E. 1995 . Fishes of the Tristan da Cunha group and Gough Island, South Atlantic Ocean . Ichthyological Bulletin of the J.L.B. Smith Institute of Ichthyology , 63 : 1 – 43 .
   Google Scholar
• Annala , J. H. 1987 . The biology and fishery of tarakihi, Nemadactylus macropterus, in New Zealand waters . New Zealand Fisheries Research Division Occasional Publications , 51 : 1 – 12 .
   Google Scholar
• Bermingham , E. , McCafferty , S. S. and Martin , A. P. 1997 . “ Fish biogeography and molecular clocks: perspectives from the Panamanian Isthmus ” . In Molecular Systematics of Fishes , Edited by: Kocher , T. D. and Stepien , C. A. 113 – 128 . San Diego : Academic Press .
   Google Scholar
• Burridge , C. P. 1999 . Molecular phylogeny of Nemadactylus and Acantholatris (Perciformes: Cirrhitoidea), with implications for taxonomy and biogeography . Molecular Phylogenetics and Evolution , 13 : 93 – 109 .
   PubMed Web of Science ®Google Scholar
• Cavalli-Sforza , L. L. and Edwards , A. W. F. 1967 . Phylogenetic analysis: models and estimation procedures . Evolution , 32 : 550 – 570 .
   Web of Science ®Google Scholar
• Cole , R. G. , Creese , R. G. , Grave , R. V. , Irving , P. and Jackson , B. R. 1992 . Abundance and patterns of subtidal benthic invertebrates and fishes at the Kermadec Islands . Marine Ecology Progress Series , 82 : 207 – 218 .
   Web of Science ®Google Scholar
• Elliott , N. G. and Ward , R. D. 1994 . Enzyme variation in jackass morwong, Nemadactylus macropterus (Schneider, 1801) (Teleostei: Cheilodactylidae), from Australian and New Zealand waters . Australian Journal of Marine and Freshwater Research , 45 : 51 – 67 .
   Google Scholar
• Farris , J. S. 1989 . The retention index and the re-scaled consistency index . Cladistics , 5 : 417 – 419 .
   PubMed Web of Science ®Google Scholar
• Farris , J. S. , Källersjö , M. , Kluge , A. G. and Bult , C. 1995 . Testing significance of incongruence . Cladistics , 10 : 315 – 319 .
   Web of Science ®Google Scholar
• Felsenstein , J. 1981 . Evolutionary trees from DNA sequences: a maximum likelihood approach . Journal of Molecular Evolution , 17 : 368 – 376 .
   PubMed Web of Science ®Google Scholar
• Felsenstein , J. 1985a . Confidence limits on phylogenies: an approach using the bootstrap . Evolution , 39 : 783 – 791 .
   PubMed Web of Science ®Google Scholar
• Felsenstein , J. 1985b . Confidence limits on phylogenies with a molecular clock . Systematic Zoology , 34 : 152 – 161 .
   Google Scholar
• Felsenstein , J. 1993 . PHYLIP (Phylogeny Inference Package), Version 3.5c (Seattle: University of Washington), computer software. Francis, M. P., 1996, Coastal Fishes of New Zealand. An IdentiWcation Guide , 72 Auckland : Reed Publishing .
   Google Scholar
• Greenwood , P. H. 1995 . A revised familial classification for certain cirrhitoid genera (Teleostei, Percoidei, Cirrhitoidea), with comments on the group's monophyly and taxonomic ranking . Bulletin of the Natural History Museum, London , 61 : 1 – 10 .
   Google Scholar
• Grewe , P. M. , Smolenski , A. J. and Ward , R. D. 1994 . Mitochondrial DNA diversity in jackass morwong (Nemadactylus macropterus, Teleostei) from Australian and New Zealand waters . Canadian Journal of Fisheries and Aquatic Sciences , 51 : 1101 – 1109 .
   Web of Science ®Google Scholar
• Hillis , D. M. and Huelsenbeck , J. P. 1992 . Signal, noise, and reliability in molecular phylogenetic analyses . Journal of Heredity , 83 : 189 – 195 .
   PubMed Web of Science ®Google Scholar
• Hillis , D. M. , Larson , A. , Davis , S. K. and Kimmer , E. A. 1990 . “ Nucleic acids III: sequencing ” . In Molecular Systematics , Edited by: Hillis , D. M. and Moritz , C. 318 – 370 . Sunderland, MA : Sinauer .
   Google Scholar
• Hutchins , B. and Swainston , R. 1986 . Sea Fishes of Southern Australia , 180 Perth : Swainston Publishing .
   Google Scholar
• Kimura , M. 1980 . A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences . Journal of Molecular Evolution , 16 : 111 – 120 .
   PubMed Web of Science ®Google Scholar
• Kishino , H. and Hasegawa , M. 1989 . Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in Hominoidea . Journal of Molecular Evolution , 29 : 170 – 179 .
   PubMed Web of Science ®Google Scholar
• Kluge , A. G. and Farris , J. S. 1969 . Quantitative phyletics and the evolution of anurans . Systematic Zoology , 18 : 1 – 32 .
   Google Scholar
• Knowlton , N. 1993 . Sibling species in the sea . Annual Reviews in Ecology and Systematics , 24 : 189 – 216 .
   Google Scholar
• Kocher , T. D. , Thomas , W. K. , Meyer , A. , Edwards , S. V. , Pääbo , S. , Villablanca , F. X. and Wilson , A. C. Dynamics of mitochondrial DNA evolution in animals: amplification and sequencing with conserved primers . Proceedings of the National Academy of Sciences . USA. pp. 6196 – 6200 .
   Google Scholar
• Lawver , L. A. , Gahagan , L. M. and Coffin , M. F. 1992 . The development of paleoseaways around Antarctica . Antarctic Research Series , 56 : 7 – 30 .
   Google Scholar
• Martin , A. P. , Naylor , G. J. P. and Palumbi , S. R. 1992 . Rates of mitochondrial DNA evolution in sharks are slow compared with mammals . Nature , 357 : 153 – 155 .
   PubMed Web of Science ®Google Scholar
• Pääbo , S. 1990 . “ Amplifying ancient DNA ” . In PCR Protocols: A Guide to Methods and Applications , Edited by: Innes , M. A. , Gelfand , D. H. , Sninski , J. J. and White , T. J. 159 – 166 . San Diego : Academic Press .
   Google Scholar
• Palumbi , S. R. , Martin , A. P. , Romano , S. , McMillan , W. O. , Stice , L. and Grabowski , G. 1991 . The Simple Fool's Guide to PCR, Version 2 , 1 – 45 . Honolulu : Department of Zoology, University of Hawaii .
   Google Scholar
• Rand , D. M. 1994 . Thermal habit, metabolic rate and the evolution of mitochondrial DNA . Trends in Ecology and Evolution , 9 : 125 – 131 .
   PubMed Web of Science ®Google Scholar
• Russell , B. C. 2000 . Review of the southern temperate fish family Aplodactylidae (Pisces: Perciformes) . Journal of Natural History , 34 : 2157 – 2171 .
   Web of Science ®Google Scholar
• Saitou , N. and Nei , M. 1987 . The neighbour-joiningmethod: a newmethod for reconstructing phylogenetic trees . Molecular Biology and Evolution , 4 : 406 – 425 .
   PubMed Web of Science ®Google Scholar
• Smith , A. B. 1994 . Rooting molecular trees: problems and strategies . Biological Journal of the Linnean Society , 51 : 279 – 292 .
   Web of Science ®Google Scholar
• Stepien , C. A. 1990 . Population structure, diets and biogeographic relationships of a rocky intertidal fish assemblage in central Chile: high levels of herbivory in a temperate system . Bulletin of Marine Science , 47 : 598 – 612 .
   Google Scholar
• Swofford , D. L. 1999 . PAUP*. Phylogenetic Analysis Using Parsimony (*and Other Methods), Version 4 , Sunderland, MA : Sinauer Associates . computer software
   Google Scholar
• Takezaki , N. , Rzhetsky , A. and Nei , M. 1995 . Phylogenetic test of the molecular clock and linearized trees . Molecular Biology and Evolution , 12 : 823 – 833 .
   PubMed Web of Science ®Google Scholar
• Templeton , A. R. 1983 . Phylogenetic inference from restriction endonuclease cleavage site maps with particular reference to the evolution of humans and the apes . Evolution , 37 : 221 – 244 .
   PubMed Web of Science ®Google Scholar
• Vawter , A. T. , Rosenblatt , R. and Gorman , G. C. 1980 . Genetic divergence among fishes of the eastern Pacific and the Caribbean: support for the molecular clock . Evolution , 34 : 705 – 711 .
   PubMed Web of Science ®Google Scholar
• Waters , J. M. and Burridge , C. P. 1999 . Extreme intraspecific mitochondrial DNA sequence divergence in Galaxias maculatus (Osteichthys: Galaxiidae), one of the world's most widespread freshwater fish . Molecular Phylogenetics and Evolution , 11 : 1 – 12 .
   PubMed Web of Science ®Google Scholar