References
- Amado-Filho GM, Moura RL, Bastos AC, Salgado LT, Sumida PY, Guth AZ, Francini-Filho RB, Pereira-Filho GH, Abrantes DP, Brasileiro PS, et al. 2012. Rhodolith beds are major CaCO3 bio-factories in the tropical South West Atlantic.Thrush S, editor. PLoS One [Internet]. 7:e35171. doi:10.1371/journal.pone.0035171
- Arantes RCM, Seoane JCS. 2017. Base de dados em SIG aplicada à modelagem ambiental em recifes de coral: Recife de Fora, Porto Seguro, Bahia, Brasil. Rev Bras Cartogr. 69:1913–1938.
- Barott K, Smith J, Dinsdale E, Hatay M, Sandin S, Rohwer F, Ahmed N. 2009. Hyperspectral and physiological analyses of coral-algal interactions.Ahmed N, editor. PLoS One [Internet]. 4:e8043. doi:10.1371/journal.pone.0008043
- Barott KL, Williams GJ, Vermeij MJA, Harris J, Smith JE, Rohwer FL, Sandin SA. 2012. Natural history of coral−algae competition across a gradient of human activity in the Line Islands. Mar Ecol Prog Ser [Internet]. 460: 1–12; [ accessed 2014 Nov 10]. http://www.int-res.com/abstracts/meps/v460/p1-12/.
- Bellwood DR, Hughes TP, Folke C, Nyström M. 2004. Confronting the coral reef crisis. Nature [Internet]. 429: 827–833; [accessed 2014 Nov 6]. http://www.nature.com/nature/journal/v429/n6994/abs/nature02691.html.
- Bittencourt ACSP, Dominguez JML, Martin L, Silva IR. 2005. Longshore transport on the northeastern Brazilian coast and implications to the location of large scale accumulative and erosive zones: an overview. Mar Geol [Internet]. 219: 219–234; [ accessed 2014 Nov 7]. http://www.sciencedirect.com/science/article/pii/S0025322705001878.
- Bonaldo RM, Bellwood DR. 2008. Size-dependent variation in the functional role of the parrotfish Scarus rivulatus on the Great Barrier Reef, Australia. Mar Ecol Prog Ser [Internet]. 360:237–244. http://www.int-res.com/abstracts/meps/v360/p237-244/.
- Bonaldo RM, Krajewski JP, Sazima C, Sazima I. 2006. Foraging activity and resource use by three parrotfish species at Fernando de Noronha Archipelago, tropical West Atlantic. Mar Biol [Internet]. 149:423–433. http://link.springer.com/10.1007/s00227-005-0233-9.
- Box SJ, Mumby PJ. 2007. Effect of macroalgal competition on growth and survival of juvenile Caribbean corals. Mar Ecol Prog Ser [Internet]. 342:139–149. http://www.int-res.com/abstracts/meps/v342/p139-149/.
- Bruno JF, Selig ER, Freckleton R. 2007. Regional decline of coral cover in the Indo-Pacific: timing, extent, and subregional comparisons.Freckleton R, editor. PLoS One [Internet]. 2:e711.
- Calderon EN, Zilberberg C, Castro CB. 2013. Farming of the fire-coral Millepora alcicornis for reef restoration purposes: the influence of inclination on growth. Aquac Res [Internet]. 1–3. doi:10.1111/are.12338
- Castro CB, Pires DO. 2001. Brazilian coral reefs: what we already know and what is still missing. Bull Mar Sci. 69:357–371.
- Castro CB, Segal B, Negrão F, Calderon EN. 2012. Four-year monthly sediment deposition on turbid southwestern Atlantic coral reefs, with a comparison of benthic assemblages. Brazilian J Oceanogr. 60:49–63.
- Castro CB, Segal B, Pires DO, Medeiros MS. 2005. Distribution and diversity of coral communities in the Abrolhos Reef complex, Brazil. In: Dutra GF, Allen GR, Werner TB, McKenna SA, editors. A Rapid Mar Biodivers Assess Abrolhos Bank, Bahia, Brazil. RAP Bullet. Washington, USA: Conservation International; p. 19–39.
- Clarke KR. 1993. Non-parametric multivariate analyses of changes in community structure. Aust J Ecol [Internet]. 18:117–143.
- Connell JH, Hugues TP, Wallace CC, Tanner JE, Harms KE, Kerr A. 2004. A long-term study of competition and diversity of corals. Ecol Monogr. 74:179–210.
- Connolly R, Hindell J, Gorman D. 2005. Seagrass and epiphytic algae support nutrition of a fisheries species, Sillago schomburgkii, in adjacent intertidal habitats. Mar Ecol Prog Ser [Internet]. 286:69–79. http://www.int-res.com/abstracts/meps/v286/p69-79/.
- Costa OS Jr, Attrill MJ, Pedrini AG, De-Paula JC. 2002. Spatial and seasonal distribution of seaweeds on coral reefs from southern Bahia, Brazil. Bot Mar [Internet]. 45: 346–355; [ accessed 2014 Aug 25]. http://search.proquest.com/docview/289061800?accountid=27991%5Cnhttp://link.periodicos.capes.gov.br/sfxlcl41?url_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&genre=article&sid=ProQ:ProQ:pqdias&atitle=Spatial+and+Seasonal+Distribution+of+Seawee.
- Costa TJF, Pinheiro HT, Teixeira JB, Mazzei EF, Bueno L, Hora MSC, Joyeux J-C, Carvalho-Filho A, Amado-Filho GM, Sampaio CLS, et al. 2014. Expansion of an invasive coral species over Abrolhos Bank, Southwestern Atlantic. Mar Pollut Bull [Internet]. 85. 252–253; [accessed 2014 Jul 16]. doi:10.1016/j.marpolbul.2014.06.002
- Coutinho R, Villaça RC, Magalhães CA, Guimaraens MA, Apolinário M, Muricy G. 1993. Influência antrópica nos ecossistemas coralinos da região de Abrolhos, Bahia, Brasil. Acta Biol Leopoldensia. 15:133–144.
- Den Hartog C. 1972. The sea-grasses of Brazil. Acta Bot Neerl [Internet]. 21:512–516. http://pdf.usaid.gov/pdf_docs/PNAAM467.pdf.
- DHN. 2012. Tábua de marés para o porto de Ilhéus (BA) [Internet]. [accessed 2016 Oct 21]. www.dhn.mar.mil.br.
- Dudgeon SR, Aronson RB, Bruno JF, Precht WF. 2010. Phase shifts and stable states on coral reefs. Mar Ecol Prog Ser [Internet]. 413:201–216. http://www.int-res.com/abstracts/meps/v413/p201-216/.
- Ferrari R, Gonzalez-Rivero M, Mumby P. 2012. Size matters in competition between corals and macroalgae. Mar Ecol Prog Ser [Internet]. 467:77–88. http://www.int-res.com/abstracts/meps/v467/p77-88/.
- Figueiredo MAO. 2005. Diversity of macrophytes on the Abrolhos Bank, Brazil. In: Dutra GF, Allen GR, Werner T, McKenna SA, editors. Rapid Mar Biodivers Assess Abrolhos Bank, Bahia, Brazil (Vol. 38). Washington, USA: RAP Bulletin of Biological Assessment; p. 67–74.
- Fonseca MS. 1989. Sediment stabilization by Halophila decipiens in comparison to other seagrasses. Estuar Coast Shelf Sci. 29:501–507.
- Fonseca MS, Fisher JS. 1986. A comparison of canopy friction and sediment movement between four species of seagrass with reference to their ecology and restoration. Mar Ecol Prog Ser [Internet]. 29:15–22. http://www.int-res.com/articles/meps/29/m029p015.pdf.
- Francini-Filho R, Reis R, Meirelles P, Moura R, Thompson F, Kikuchi R, Kaufman L. 2010a. Seasonal prevalence of white plague like disease on the endemic Brazilian reef coral Mussismilia braziliensis. Lat Am J Aquat Res [Internet]. 38:292–296. http://www.lajar.cl/pdf/imar/v38n2/Articulo_38_2_16.pdf.
- Francini-Filho RB, Coni EOC, Meirelles PM, Amado-Filho GM, Thompson FL, Pereira-Filho GH, Bastos AC, Abrantes DP, Ferreira CM, Gibran FZ, et al. 2013. Dynamics of coral reef benthic assemblages of the Abrolhos Bank, eastern Brazil: inferences on natural and anthropogenic drivers. PLoS One. 8:e54260.
- Francini-Filho RB, Ferreira CM, Coni EOC, de Moura RL, Kaufman L. 2010b. Foraging activity of roving herbivorous reef fish (Acanthuridae and Scaridae) in eastern Brazil: influence of resource availability and interference competition. J Mar Biol Assoc United Kingdom [Internet]. 90:481–492. http://www.journals.cambridge.org/abstract_S0025315409991147.
- Francini-Filho RB, Moura RL. 2008. Dynamics of fish assemblages on coral reefs subjected to different management regimes in the Abrolhos Bank, eastern Brazil. Aquat Conserv Mar Freshw Ecosyst [Internet]. 18. 1166–1179; [accessed 2015 Jan 18]. doi:10.1002/aqc.966
- Francini-Filho RB, Moura RL. 2010. Predation on the toxic zoanthid Palythoa caribaeorum by reef fishes in the Abrolhos Bank, eastern Brazil. Brazilian J Oceanogr [Internet]. 58:77–79. http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1679-87592010000100008&lng=en&nrm=iso&tlng=en.
- Francini-Filho RB, Moura RL, Thompson FL, Reis RM, Kaufman L, Kikuchi RKP, Leão ZMAN. 2008. Diseases leading to accelerated decline of reef corals in the largest south Atlantic reef complex (Abrolhos Bank, eastern Brazil). Mar Pollut Bull [Internet]. 56: 1008–1014; [ accessed 2014 Oct 8]. http://www.sciencedirect.com/science/article/pii/S0025326X08000799.
- Garcia TM, Matthews-Cascon H, Franklin-Junior W. 2008. Macrofauna associated with branching fire coral Millepora alcicornis (Cnidaria: Hydrozoa). Thalassas. 24:11–19.
- Gardner TA, Côté IM, Gill JA, Grant A, Watkinson AR. 2003. Long-term region-wide declines in Caribbean corals. Science (80-) [Internet]. 301:958–960. http://www.sciencemag.org/cgi/doi/10.1126/science.1086050.
- Gherardi DFM, Bosence DWJ. 2001. Composition and community structure of the coralline algal reefs from Atol das Rocas, south Atlantic, Brazil. Coral Reefs [Internet]. 19:205–219.
- Gibbs AE, Cochran SA. 2009. An integrated approach to benthic habitat mapping using remote sensing and GIS: an example from the Hawaiian Islands. Yang X, editor Remote Sens Geospatial Technol Coast Ecosyst Assess Manag [Internet]. Berlin, Heidelberg: Springer Berlin Heidelberg;. 211–231. http://link.springer.com/10.1007/978-3-540-88183-4.
- Gorman D, Turra A, Bergstrom ER, Horta PA. 2016. Population expansion of a tropical seagrass (Halophila decipiens) in the southwest Atlantic (Brazil). Aquat Bot [Internet]. 132:30–36. http://linkinghub.elsevier.com/retrieve/pii/S0304377016300353.
- Hackney JM, Carpenter RC, Adey WH. 1989. Characteristic adaptations to grazing among algal turfs on a Caribbean coral reef. Phycologia [Internet]. 28:109–119.
- Hammer Ø, Harper DAT, Ryan PD. 2001. PAST: Paleontological statistics software package for education and data analysis. Palaeontol Electron [Internet]. 4:1–9. http://palaeo-electronica.org/2001_1/past/issue1_01.htm.
- Heyward AJ, Negri AP. 1999. Natural inducers for coral larval metamorphosis. Coral Reefs [Internet]. 18:273–279.
- Hughes TP. 1994. Catastrophes, phase shifts, and large-scale degradation of a Caribbean coral reef. Science (80-) [Internet]. 265: 1547–1551; [ accessed 2014 Nov 20]. http://bio.classes.ucsc.edu/bio160/Bio160readings/Catastrophes,PhaseShifts.pdf.
- Hughes TP, Bellwood DR, Baird AH, Brodie J, Bruno JF, Pandolfi JM. 2011. Shifting base-lines, declining coral cover, and the erosion of reef resilience: Comment on Sweatman et al. (2011). Coral Reefs. 30:653–660.
- Hughes TP, Rodrigues MJ, Bellwood DR, Ceccarelli D, Hoegh-Guldberg O, McCook L, Moltschaniwskyj N, Pratchett MS, Steneck RS, Willis B. 2007. Phase shifts, herbivory, and the resilience of coral reefs to climate change. Curr Biol [Internet]. 17: 360–365; [accessed 2014 Jul 11]. http://www.ncbi.nlm.nih.gov/pubmed/17291763.
- IBGE. 1999. Mapeamento topográfico sistemático. Folha 2276 - Porto Seguro [Internet]. [ accessed 2016 Oct 21]. www.ibge.gov.br.
- IUCN. 2018. The IUCN red list of threatened species. Version 2018-2 [Internet]. [accessed 2018 Oct 1]. http://www.iucnredlist.org
- Johnson CR, Sutton DC. 1994. Bacteria on the surface of crustose coralline algae induce metamorphosis of the crown-of-thorns starfish Acanthaster planci. Mar Biol [Internet]. 120:305–310.
- Jompa J, McCook L. 2003. Coral-algal competition: macroalgae with different properties have different effects on corals. Mar Ecol Prog Ser [Internet]. 258:87–95. http://www.int-res.com/abstracts/meps/v258/p87-95/.
- Kemp DW, Oakley CA, Thornhill DJ, Newcomb LA, Schmidt GW, Fitt WK. 2011. Catastrophic mortality on inshore coral reefs of the Florida Keys due to severe low-temperature stress. Glob Chang Biol [Internet]. 17:3468–3477.
- Kikuchi RKP, Zman L, Oliveira MDM. 2010. Conservation status and spatial patterns of AGRRA vitality indices in southwestern Atlantic reefs. Rev Biol Trop. 58:1–31.
- Klumpp DW, McKinnon AD. 1992. Community structure, biomass and productivity of epilithic algal communities on the Great Barrier Reef: dynamics at different spatial scales. Mar Ecol Prog Ser. 86:77–89.
- Knowlton N. 2004. Multiple “stable” states and the conservation of marine ecosystems. Prog Oceanogr [Internet]. 60:387–396. http://linkinghub.elsevier.com/retrieve/pii/S0079661104000369.
- Kuffner IB, Andersson AJ, Jokiel PL, Rodgers KS, Mackenzie FT. 2008. Decreased abundance of crustose coralline algae due to ocean acidification. Nat Geosci [Internet]. 1:114–117. http://www.nature.com/doifinder/10.1038/ngeo100.
- Labbé-Bellas R, Cordeiro CAMM, Floeter SR, Segal B. 2016. Sea urchin abundance and habitat relationships in different Brazilian reef types. Reg Stud Mar Sci [Internet]. 8:33–40. http://linkinghub.elsevier.com/retrieve/pii/S2352485516301359.
- Laborel J. 1969. Madreporaires et hydrocoralliaires recifaux des côtes Brasiliennes. Systématic, écologie, répartition verticale et geographique. Ann l’Institut océanographique. 47:171–229.
- Laborel J. 1970. Les peuplements de madréporaires des cotes tropicales du Brésil. Ann L’Université D’Abidjan. 2:1–260.
- Laborel-Deguen F. 1963. Nota preliminar sobre a ecologia das pradarias de fanerógamas marinhas nas costas de PE e PB. Trab do Inst Biol Marítima e Oceanogr. 3:39–50.
- Leão ZMAN, Kikuchi RKP. 2005. A relic coral fauna threatened by global changes and human activities, eastern Brazil. Mar Pollut Bull [Internet]. 51: 599–611; [accessed 2015 Jan 14]. http://www.sciencedirect.com/science/article/pii/S0025326X05001736.
- Leão ZMAN, Kikuchi RKP. 2011. Brazil, coral reefs. In: Hopley D, editor. “https://www.springer.com/gp/book/9789048126385” Encyclopedia of Modern Coral Reefs [Internet]. Dordrecht: Springer Netherlands; p. 405–449. doi:10.1007/978-90-481-2639-2
- Leão ZMAN, Kikuchi RKP, Oliveira MDM, Vasconcellos V. 2010. Status of eastern Brazilian coral reefs in time of climate changes. Panam J Aquat Sci. 5:224–235.
- Leão ZMAN, Kikuchi RKP, Testa V. 2003. Corals and coral reefs of Brazil. Cortés J, editor Coastal Marine Ecosystems of Latin America [Internet]. Amsterdam, Netherlands: Elsevier Science B.V. 9–52. Available from http://linkinghub.elsevier.com/retrieve/pii/B9780444513885500035.
- Lewis JB. 2006. Biology and ecology of the hydrocoral Millepora on coral reefs. Adv Mar Biol. 50:1–55.
- Lirman D, Manzello D. 2009. Patterns of resistance and resilience of the stress-tolerant coral Siderastrea radians (Pallas) to sub-optimal salinity and sediment burial. J Exp Mar Bio Ecol [Internet]. 369:72–77. http://linkinghub.elsevier.com/retrieve/pii/S0022098108005467.
- Littler MM, Littler DS 1997. Disease-induced mass mortality of crustose corelline algae on coral reefs provides rationale for the conservation of herbivorous fish stocks. In: Proceedings of the 8th International Coral Reef Symposium, Panamá City; p. 719–724.
- Magris RA, Treml EA, Pressey RL, Weeks R. 2016. Integrating multiple species connectivity and habitat quality into conservation planning for coral reefs. Ecography (Cop) [Internet]. 39:649–664.
- Mariath R, Rodriguez RR, Figueiredo MAO. 2013. Succession of crustose coralline red algae (Rhodophyta) on coralgal reefs exposed to physical disturbance in the southwest Atlantic. Helgol Mar Res [Internet]. 67:687–696.
- Marques LV, Creed JC. 2008. Biologia e ecologia das fanerógamas marinhas do Brasil. Oecologia Aust [Internet]. 12:315–331. http://www.oecologiaaustralis.org/ojs/index.php/oa/article/view/107/33.
- Mazzei EF, Bertoncini AA, Pinheiro HT, Machado LF, Vilar CC, Guabiroba HC, Costa TJF, Bueno LS, Santos LN, Francini-Filho RB, et al. 2017. Newly discovered reefs in the southern Abrolhos Bank, Brazil: Anthropogenic impacts and urgent conservation needs. Mar Pollut Bull [Internet]. 114:123–133. http://linkinghub.elsevier.com/retrieve/pii/S0025326X16306907.
- McCook L. 2001. Competition between corals and algal turfs along a gradient of terrestrial influence in the nearshore central Great Barrier Reef. Coral Reefs [Internet]. 19:419–425.
- Mendonça-Neto JP, Ferreira CEL, Chaves LCT, Pereira RC. 2008. Influence of Palythoa caribaeorum (Anthozoa, Cnidaria) zonation on site-attached reef fishes. An Acad Bras Cienc. 80:495–513.
- Miranda RJ, Cruz ICS, Barros F. 2016. Effects of the alien coral Tubastraea tagusensis on native coral assemblages in a southwestern Atlantic coral reef. Mar Biol [Internet]. 163:1–12.
- MMA. 2014. Portaria N. 445 Lista nacional oficial de espécies da fauna ameaçadas de extinção - peixes e invertebrados aquáticos. Diário Oficial da União. 17 dezembro 2014. 245:126–130.
- Moberg F, Folke C. 1999. Ecological goods and services of coral reef ecosystems. Ecol Econ [Internet]. 29: 215–233; [ accessed 2014 Sep 15]. http://linkinghub.elsevier.com/retrieve/pii/S0921800999000099.
- Morse ANC, Iwao K, Baba M, Shimoike K, Hayashibara T, Omori M. 1996. An ancient chemosensory mechanism brings new life to coral reefs. Biol Bull. 191:149–154.
- Morse DE, Hooker N, Morse ANC, Jensen RA. 1988. Control of larval metamorphosis and recruitment in sympatric agariciid corals. J Exp Mar Bio Ecol [Internet]. 116:193–217. http://linkinghub.elsevier.com/retrieve/pii/0022098188900275.
- Moura RL 2000. Brazilian reefs as priority areas for biodiversity conservation in the Atlantic Ocean. In: Moosa MK, Soemodihardjo S, Soegiarto A, Romimohtarto K, Nontji A, Soekarno S, editors. Proceedings of the 9th International Coral Reef Symposium [Internet]. Vol. 2. Bali, Indonesia; p. 23–27. http://www.reefbase.org/download/download.aspx?type=1&docid=11859.
- Mumby PJ, Harborne AR. 1999. Development of a systematic classification scheme of marine habitats to facilitate regional management and mapping of Caribbean coral reefs. Biol Conserv [Internet]. 88:155–163. http://linkinghub.elsevier.com/retrieve/pii/S0006320798001086.
- Mumby PJ, Harborne AR, Gratwicke B. 2010. Marine reserves enhance the recovery of corals on Caribbean reefs. PLoS One. 5:1–7.
- Mumby PJ, Harborne AR, Williams J, Kappel CV, Brumbaugh DR, Micheli F, Holmes KE, Dahlgren CP, Paris CB, Blackwell PG. 2007. Trophic cascade facilitates coral recruitment in a marine reserve. Proc Natl Acad Sci [Internet]. 104:8362–8367. http://www.pnas.org/cgi/content/abstract/104/20/8362.
- Muthiga NA, Szmant AM. 1987. The effects of salinity stress on the rates of aerobic respiration and photosynthesis in the hermatypic coral Siderastrea siderea. Biol Bull. 173:539–551.
- Oigman-Pszczol SS, Creed JC. 2004. Size structure and spatial distribution of the corals Mussismilia hispida and Siderastrea stellata (Scleractinia) at Armação dos Búzios, Brazil. Bull Mar Sci. 74:433–448.
- Osborne K, Dolman AM, Burgess SC, Johns KA, Gratwicke B. 2011. Disturbance and the dynamics of coral cover on the Great Barrier Reef (1995–2009).Gratwicke B, editor. PLoS One [Internet]. 6:e17516.
- Paddack MJ, Cowen RK, Sponaugle S. 2006. Grazing pressure of herbivorous coral reef fishes on low coral-cover reefs. Coral Reefs [Internet]. 25:461–472.
- Palomares MLD, Pauly D 2016. SeaLifeBase. World Wide Web Electron Publ [Internet]. www.sealifebase.org.
- Paula AF, Creed JC. 2004. Two species of the coral Tubastraea (Cnidaria, Scleractinia) in Brazil: a case of accidental introduction. Bull Mar Sci. 74:175–183.
- Pereira PHC, Leal ICS, de Araújo ME, Souza AT. 2012. Feeding association between reef fishes and the fire coral Millepora spp. (Cnidaria: Hydrozoa). Mar Biodivers Rec [Internet]. 5:e42. http://www.journals.cambridge.org/abstract_S1755267212000073.
- Pitombo FB, Ratto CC, Belem MJC 1988. Species diversity and zonation pattern of hermatypic corals at two fringing reefs of Abrolhos Arquipelago, Brazil. In: Proceedings of the 6th International Coral Reef Symposium . Vol. 2. Townsville; p. 817–820.
- Quinn JF. 1982. Competitive hierarchies in marine benthic communities. . Oecologia, Berlin. 54:129–135. Oecologia. 54:129–135.
- Rasher DB, Hay ME. 2010. Chemically rich seaweeds poison corals when not controlled by herbivores. Proc Natl Acad Sci [Internet]. 107:9683–9688.
- Reis VM, Karez CS, Mariath R, Moraes FC, Carvalho RT, Brasileiro PS, Bahia RG, Lotufo TMC, Ramalho LV, Moura RL, et al. 2016. Carbonate production by benthic communities on shallow coralgal reefs of Abrolhos Bank, Brazil.Bianchi CN, editor. PLoS One [Internet]. 11:e0154417. doi:10.1371/journal.pone.0154417
- Riul P, Targino C, Júnior L, Creed J, Horta P, Costa G. 2013. Invasive potential of the coral Tubastraea coccinea in the southwest Atlantic. Mar Ecol Prog Ser [Internet]. 480: 73–81; [accessed 2014 Aug 18]. http://www.int-res.com/abstracts/meps/v480/p73-81/.
- Rogers R, Correal GO, Oliveira TC, Carvalho LL, Mazurek P, Barbosa JEF, Chequer L, Domingos TFS, Jandre KA, Lsd L, et al. 2014. Coral health rapid assessment in marginal reef sites. Mar Biol Res [Internet]. 10:612–624. http://www.tandfonline.com/doi/abs/10.1080/17451000.2013.841944.
- Sampaio CLS, Miranda RJ, Maia-Nogueira R, Nunes JACC. 2012. New occurrences of the nonindigenous orange cup corals Tubastraea coccinea and T. tagusensis (Scleractinia: Dendrophylliidae) in southwestern Atlantic. Check List. 8:528–530.
- Scheer G. 1978. Application of phytosociologic methods. In: Stoddart DR, Johannes RE, editors. Coral reefs: research methods. Paris: United Nations Educational, Scientific and Cultural Organization (Unesco); p. 175–196.
- Schiavetti A, Manz J, Santos CZ, Magro TC, Pagani MI. 2013. Marine Protected Areas in Brazil: an ecological approach regarding the large marine ecosystems. Ocean Coast Manag [Internet]. 76: 96–104; [accessed 2014 Feb 7]. http://www.sciencedirect.com/science/article/pii/S0964569113000288.
- Sebens KP. 1982. Intertidal distribuition of zoanthids on the Caribbean coast of Panamá: effects of predation and desiccation. Bull Mar Sci. 32:316–335.
- Segal B, Berenguer V, Castro CB. 2012. Experimental recruitment of the Brazilian endemic coral Mussismilia braziliensis and conditioning of settlement plates. Ciências Mar. 38:1–10.
- Segal B, Castro CB. 2011. Coral community structure and sedimentation at different distances from the coast of the Abrolhos Bank, Brazil. Brazilian J Oceanogr [Internet]. 59: 119–129; [accessed 2014 Aug 29]. http://www.scielo.br/scielo.php?pid=S1679-87592011000200001&script=sci_arttext&tlng=es.
- Seoane JCS, Arantes RCM, Castro CB, Tedesco EC, Lopes LS. 2008. Atlas Físico do Parque Municipal Marinho do Recife de Fora. Rio de Janeiro, Brasil: Projeto Coral Vivo.
- Short F, Carruthers T, Dennison W, Waycott M. 2007. Global seagrass distribution and diversity: a bioregional model. J Exp Mar Bio Ecol [Internet]. 350:3–20. http://linkinghub.elsevier.com/retrieve/pii/S002209810700305X.
- Short FT, Neckles HA. 1999. The effects of global climate change on seagrasses. Aquat Bot [Internet]. 63:169–196. http://linkinghub.elsevier.com/retrieve/pii/S030437709800117X.
- Silva IR. 2008. Subsídios para a gestão ambiental das praias da Costa do Descobrimento, litoral Sul do estado da Bahia, Brasil. Rev da Gestão Costeira Integr. 8:47–60.
- Silva IR, Bittencourt ACSP, Dominguez JML, Martin L. 2001. Principais padrões de dispersão de sedimentos ao longo da costa do descobrimento - Sul do estado da Bahia. Rev Bras Geociências [Internet]. 31: 335–340; [accessed 2014 Aug 28]. http://www.rbg.sbgeo.org.br/index.php/rbg/article/view/A-1205.
- Smith JE, Shaw M, Edwards RA, Obura D, Pantos O, Sala E, Sandin SA, Smriga S, Hatay M, Rohwer FL. 2006. Indirect effects of algae on coral: algae-mediated, microbe-induced coral mortality. Ecol Lett. 9:835–845.
- Somerfield PJ, Jaap WC, Clarke KR, Callahan M, Hackett K, Porter J, Lybolt M, Tsokos C, Yanev G 2008. Changes in coral reef communities among the Florida Keys, 1996–2003. Coral Reefs [Internet]. 27:951–965; [accessed 2014 Oct 21]. http://link.springer.com/10.1007/s00338-008-0390-7.
- Souza Barros KV, Rocha-Barreira CA, Magalhães KM. 2013. Ecology of Brazilian seagrasses: is our current knowledge sufficient to make sound decisions about mitigating the effects of climate change? Iheringia - Ser Bot. 68:163–178.
- Steneck RS. 1986. The ecology of coralline algal crustsconvergent patterns and adaptive strategies. Annu Rev Ecol Syst. 17:273–303.
- Suchanek TH, Green DJ 1981. Interspecific competition between Palythoa caribaeorum and other sessile invertebrates on St. Croix Reefs, U.S. Virgin Islands. Proceedings of the Fourth Coral Reef Symposium, Manila; Vol. 2, p. 679–684.
- Suzuki G, Hayashibara T. 2011. Do epibenthic algae induce species-specific settlement of coral larvae? J Mar Biol Assoc United Kingdom [Internet]. 91:677–683. http://www.journals.cambridge.org/abstract_S0025315410000573.
- Sweatman H, Delean S, Syms C. 2011. Assessing loss of coral cover on Australia’s Great Barrier Reef over two decades, with implications for longer-term trends. Coral Reefs [Internet]. 30:521–531. http://link.springer.com/10.1007/s00338-010-0715-1.
- Vermeij MJA, van Moorselaar I, Engelhard S, Hörnlein C, Vonk SM, Visser PM, Unsworth RKF. 2010. The effects of nutrient enrichment and herbivore abundance on the ability of turf algae to overgrow coral in the Caribbean.Unsworth RKF, editor. PLoS One [Internet]. 5:e14312.
- Villas Bôas AB, Figueiredo MAO, Villaça RC. 2005. Colonization and growth of crustose coralline algae (Corallinales, Rhodophyta) on the Rocas Atoll. Brazilian J Oceanogr [Internet]. 53:147–156. http://search.proquest.com/docview/19833606?accountid=27991%5Cnhttp://link.periodicos.capes.gov.br/sfxlcl41?url_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&genre=article&sid=ProQ:ProQ:asfabiological&atitle=Colonization+and+growth+of+crustose+coc.
- Vroom PS. 2011. Coral Dominance”: a dangerous ecosystem misnomer? J Mar Biol [Internet]. 1–8. http://www.hindawi.com/journals/jmb/2011/164127/.
- Ward LG, Kemp M, Boynton WR. 1984. The influence of waves and seagrass communities on suspended particulates in an estuarine embayment. Mar Geol. 59:85–103.
- Waycott M, Duarte CM, Carruthers TJB, Orth RJ, Dennison WC, Olyarnik S, Calladine A, Fourqurean JW, Heck KL, Hughes AR, et al. 2009. Accelerating loss of seagrasses across the globe threatens coastal ecosystems. Proc Natl Acad Sci [Internet]. 106:12377–12381.
- Zilberberg C, Peluso L, Marques JA, Cunha H. 2014. Polymorphic microsatellite loci for endemic Mussismilia corals (Anthozoa: Scleractinia) of the southwest Atlantic Ocean. J Hered [Internet]. 105:572–575.
- Zman L, Kikuchi RKP. 2001. The Abrolhos reefs of Brazil. In: Seeliger U, Kjerfve B, editors. Coastal Marine Ecosystems of Latin America [Internet] (Vol. 144). Berlin, Germany; p. 83–96. http://link.springer.com/10.1007/978-3-662-04482-7.