References
- Allen , M. P. and Tildesley , D. J. 1989 . Computer Simulation of Liquids Oxford : Clarendon Press .
- Beveridge , D. L. and Dicapua , F. M. 1989 . Computer Simulation of Biomolecular Systems Edited by: van Gunsteren , W. F. and Weiner , P. K. 1 – 25 . Leiden : ESCOM .
- Demchuk , E. , Bashford , D. , Gippert , G. P. and Case , D. A. 1997 . J. molec. Biol. , 270 : 305
- East , A. L. L. and Radom , L. 1997 . J. chem. Phys. , 106 : 6655
- Knyazev. , D. 1998 . J. phys. Chem. A , 102 : 3916
- Ayala , P. Y. and Schlegel , H. I. 1998 . J. chem. Phys. , 108 : 2314
- Mammen , M. , Shakhnovich , E. I. and Whitesides , G. M. 1998 . J. org. Chem. , 63 : 3168
- Ercolani , G. 1999 . J. org. Chem. , 64 : 3350
- Eckart , C. 1935 . Phys. Rev. , 47 : 552
- Ciccotti , G. and Ryckaert , J. P. 1986 . Comp. Phys. Rep. , 4 : 345
- Landau , L. D. and Lifshitz , E. M. 1980 . Statistical Physics, Part 1, , 3rd Edn Oxford : Pergamon .
- Meirovitch , H. 1998 . Reviews in Computational Chemistry Edited by: Lipkowitz , K. B. and Boyd , D. B. Vol. 12 , 1 – 74 . New York : Wiley .
- Amadei , A. , Apol , M. E. F. , Nola , A. D. and Berendsen , H. J. C. 1996 . J. chem. Phys. , 104 : 1560
- Karplus , M. and Kushick , J. N. 1981 . Macromolecules , 14 : 325
- Levy , R. M. , Karplus , M. , Kushick , J. and Perahia , D. 1984 . Macromolecules , 17 : 1370
- Tidor , B. and Karplus , M. 1993 . Proteins , 15 : 71
- Brady , G. P. and Sharp , K. A. 1997 . Curr. Opin. Struct. Biol. , 7 : 215
- Cheatham , T. E. , Srinivasan , J. , Case , D. A. and Kollman , P. A. 1998 . J. biomolec. Struct. Dynam. , 16 : 265
- Srinivasan , J. , Miller , J. , Kollman , P. A. and Case , D. A. 1998 . J. biomolec. Struct. Dynam. , 16 : 671
- Vorobjev , Y. N. and Hermans , J. 1999 . Biophys. Chem. , 78 : 195
- Wrabl , J. O. , Shortle , D. and Woolf , T. B. 2000 . Proteins , 38 : 123
- Maier , W. and Saupe , A. 1959 . Z. Naturforsch. , 14A : 882
- Lipari , G. and Szabo , A. 1982 . J. Am. chem. , 104 : 4546 SOC
- Yang , D. and Kay , L. E. 1996 . J. molec. Biol. , 263 : 369
- Mardia , K. V. and Jupp , P. E. 1999 . Directional Statistics Chichester : Wiley .
- Von mises , R. 1918 . Physikal. , 19 : 490
- Pitzer , K. S. and Gwinn , W. D. 1942 . J. chem. Phys. , 10 : 428
- Lewis , N. and Randall , M. 1961 . Thermodynamics, , 2nd Edn Edited by: Pitzer , K. S. and Brewer , L. New York : McGraw-Hill .
- Mackerell , A. D. Jr. 1998 . Encyclopedia of Computational Chemistry Edited by: Schleyer , P. V. R. , Allinger , N. L. , Clark , T. , Gasteiger , J. , Kollman , P. A. , Schaefer , H. F. III and Schreiner , P. R. 2191 – 2200 . Chichester : Wiley .
- Van hove , L. 1953 . Phys. Rev. , 89 : 1189
- Dauber-Osguthorpe , P. , Roberts , V. A. , Osguthorpe , D. J. , Wolff , J. , Genest , M. and Hagler , A. T. 1988 . Proteins , 4 : 31
- Kemp , J. D. and Pitzer , K. S. 1937 . J. Am. chem. SOC. , 59 : 276
- Landau , L. D. and Lifshitz , E. M. 1976 . Mechanics, , 3rd Edn Oxford : Pergamon .
- Brooks , B. R. , Janežič , D. and Karplus , M. 1995 . J. comp. Chem. , 16 : 1522
- Schrödinger , E. 1944 . What is Life? The Physical Aspect of the Living Cell Cambridge : Cambridge University Press .
- Erikkson , A. E. , Baase , W. , Wozniak , J. A. and Matthews , B. W. 1992 . Nature , 355 : 371
- Bai , Y. , Sosnick , T. R. , Mayne , L. and Englander , S. W. 1995 . Science , 269 : 192
- Hollien , J. and Marqusee , S. 1999 . Proc. Nat. Acad. Sci. , 96 : 13674 USA
- Hayward , S. , Kitao , A. and Go , N. 1995 . Proteins , 23 : 177
- Kitao , A. , Hayward , S. and Go , N. 1998 . Proteins , 33 : 496
- Still , W. C. , Guarnieri , F. and Senderowitz , H. 1998 . Rapidly convergent method for Boltzmann-weighted ensemble generation in free energy simulations, US Patent #5740072
- Mcquarrie , D. A. 1976 . Statistical Mechanics New York : Harper Collins .
- Simonson , T. and Perahia , D. 1995 . Proc. Nat. Acad. Sci. , 92 : 1082 USA
- Demchuk , E. and Wade , R. C. 1996 . J. phys. Chem. , 100 : 17373
- Juffer , A. H. , Argos , P. and Vogel , H. J. 1997 . J. phys. Chem., B , 101 : 7664
- Leach , A. R. 1996 . Molecular Modeling: Principles and Applications Singapore : Addison Wesley .