Publication Cover
Molecular Physics
An International Journal at the Interface Between Chemistry and Physics
Volume 103, 2005 - Issue 11-12: A Special Issue in Honour of Professor John P. Simons-Part I
106
Views
28
CrossRef citations to date
0
Altmetric
Original Articles

Structural investigation of naturally occurring peptides by electron capture dissociation and AMBER force field modelling

, , &
Pages 1481-1489 | Received 17 Dec 2004, Accepted 18 Feb 2005, Published online: 21 Feb 2007

References

References

  • Chait , BT , Wang , R , Beavis , RC and Kent , SB . 1993 . Science , 262 : 89
  • Loo , JA , Udseth , HR and Smith , RD . 1988 . Rapid Commun. Mass Spectrom. , 2 : 207
  • Dongre , AR , Somogyi , A and Wysocki , VH . 1996 . J. mass Spectrom. , 31 : 339
  • Little , DP , Speir , JP , Senko , MW , O’Connor , PB and McLafferty , FW . 1994 . Anal. Chem. , 66 : 2809
  • Price , WD , Schnier , PD and Williams , ER . 1996 . Anal. Chem. , 68 : 859
  • Zubarev , RA , Kelleher , NL and McLafferty , FW . 1998 . J. Am. chem. Soc. , 120 : 3265
  • Kjeldsen , F , Budnik , BA , Haselmann , KF , Jensen , F and Zubarev , RA . 2002 . Chem. Phys. Lett. , 356 : 201
  • Zubarev , RA , Kruger , NA , Fridriksson , EK , Lewis , MA , Horn , DM , Carpenter , BK and McLafferty , FW . 1999 . J. Am. chem. Soc. , 121 : 2857
  • Bakken V Helgaker T Uggerud E Electron Capture Dissociation of Protonated Peptides. Dynamics and Mechanisms 16th IMSC Edinburgh UK 2003
  • Turecek , F . 2003 . J. Am. chem. Soc. , 125 : 5954
  • Kelleher , NL , Lin , HY , Valaskovic , GA , Aaserud , DJ , Fridriksson , EK and McLafferty , FW . 1999 . J. Am. chem. Soc. , 121 : 806
  • Breuker , K , Oh , H , Lin , C , Carpenter , BK and McLafferty , FW . 2004 . Proc. natn. Acad. Sci. USA , 101 : 14011
  • Kelleher , NL , Zubarev , RA , Bush , K , Furie , B , Furie , BC , McLafferty , FW and Walsh , CT . 1999 . Anal. Chem. , 71 : 4250
  • Mirgorodskaya , E , Roepstorff , P and Zubarev , RA . 1999 . Anal. Chem. , 71 : 4431
  • Stensballe , A , Jensen , ON , Olsen , JV , Haselmann , KF and Zubarev , RA . 2000 . Rapid Commun. Mass Spectrom , 14 : 1793
  • Hakansson , K , Cooper , HJ , Emmett , MR , Costello , CE , Marshall , AG and Nilsson , CL . 2001 . Anal. Chem. , 73 : 4530
  • Horn , DM , Breuker , K , Frank , AJ and McLafferty , FW . 2001 . J. Am. chem. Soc. , 123 : 9792
  • Chang , J , Williams , RH , Humphries , AJ , Johansson , N , Folkers , K and Bowers , CY . 1972 . Biochem. biophys. Res. Commun. , 47 : 727
  • Millar , RP , Lu , Z-L , Pawson , AJ , Flanagan , CA , Morgan , K and Maudsley , SR . 2004 . Endocr. Rev , 25 : 235
  • Regoli , D and Barabe , J . 1980 . Pharmacol. Rev. , 32 : 1
  • Hall , JM . 1992 . Pharmacol. Ther. , 56 : 131
  • Barran , PE , Polfer , NC , Campopiano , DJ , Clarke , DJ , Langridge-Smith , PRR , Langley , RJ , Govan , JRW , Maxwell , A , Dorin , JR , Millar , RP and Bowers , MT . 2005 . Int. J. mass Spectrom. , 240 : 273
  • Sealfon , SC , Weinstein , H and Millar , RP . 1997 . Endocr. Rev. , 18 : 180
  • Case DA Pearlman DA Caldwell JW Cheatham TE III Ross WS Simmerling CL Darden TA Merz KM Stanton RV Cheng AL Vincent JJ Crowley M Tsui V Radmer R Duan Y Pitera J Massova IG Seibel GL Singh UC Weiner PJ Kollmann PA AMBER 7 University of California San Francisco
  • Cornell , WD , Cieplak , P , Bayly , CI , Gould , IR , Merz , KM , Ferguson , DM , Spellmeyer , DC , Fox , T , Caldwell , JW and Kollmann , PA . 1995 . J. Am. chem. Soc. , 117 : 5179
  • Kinter M Sherman NE Protein Sequencing and Identification Using Tandem Mass Spectrometry, Wiley New York 2000
  • Wysocki , VH , Tsaprailis , G , Smith , LL and Breci , LA . 2000 . J. mass Spectrom. , 35 : 1399
  • Kruger , NA , Zubarev , RA , Carpenter , BK , Kelleher , NL , Horn , DM and McLafferty , FW . 1999 . Int. J. Mass Spectrom. Ion Process. , 182/183 : 1
  • Budnik , BA , Nielsen , ML , Olsen , JV , Haselmann , KF , Hörth , P , Haehnel , W and Zubarev , RA . 2002 . Int. J. mass Spectrom. , 219 : 283
  • Polfer N University of Edinburgh 2004
  • Fenn , JB , Mann , M , Meng , CK , Wong , SF and Whitehouse , CM . 1989 . Science , 246 : 64
  • Caravatti , P and Allemann , M . 1991 . Org. Mass Spectrom. , 26 : 514
  • Tsybin , YO , Hakansson , P , Budnik , BA , Haselmann , KF , Kjeldsen , F , Gorshkov , M and Zubarev , RA . 2001 . Rapid Commun. Mass Spectrom. , 15 : 1849
  • Cieplak , P , Cornell , WD , Bayly , CI and Kollmann , PA . 1995 . Comput. Chem. , 16 : 1357
  • Frisch MJ Trucks GW Schlegel HB Scuseria GE Robb MA Cheeseman JR Zakrzewski VG Montgomery JAJ Stratman RE Burant JC Dapprich S Millam JM Daniels AD Kudin AN Strain MC Farkas O Tomasi J Barone V Cossi M Cammi R Mennucci B Pomelli C Adamo C Clifford S Ochterski J Petersson GA Ayala PY Cui Q Morokuma K Malick DK Rabuck AD Raghavacchari K Foresman JB Cioslowski J Ortiz JV Stefanov BB Liu G Liashenko A Piskorz P Komaromi I Gombertz R Martin RL Fox DJ Keith T Al-Laham MA Peng CY Nanyakkara A Gonzalez C Challacombe M Gill PMW Johnsen BG Chen W Wong MW Andres JL Head-Gordon M Replogle ES Pople JA Gaussian 98, A.7 Gaussian Inc. Pittsburgh PA 1998
  • Humphrey , W , Dalke , A and Schulten , K . 1996 . J. molec. Graphics , 14 : 33
  • Harrison , AG . 1997 . Mass Spectrom. Rev. , 16 : 201
  • Tsaprailis , G , Nair , H , Somogyi , A , Wysocki , VH , Zhong , W , Futrell , JH , Summerfield , SG and Gaskell , SJ . 1999 . J. Am. chem. Soc. , 121 : 5142
  • Hakansson , K , Emmett , MR , Hendrickson , CL and Marshall , AG . 2001 . Anal. Chem. , 73 : 3605
  • Turecek F Syrstad EA Seymour JL Chen X Paper presented at the 16th IMSC Edinburgh UK 2003
  • Laskin , J , Densiov , E and Futrell , JH . 2002 . Int. J. mass Spectrom. , 219 : 189
  • Adams , CM , Kjeldsen , F , Zubarev , RA , Budnik , BA and Haselmann , KF . 2004 . J. Am. Soc. Mass Spectrom. , 15 : 1087
  • Mihalca , R , Kleinnijenhuis , AJM , Heck , AJR and Heeren , RMA . 2004 . J. Am. Soc. Mass Spectrom. , 15 : 1869
  • Guarnieri , F and Weinstein , H . 1996 . J. Am. chem. Soc. , 118 : 5580
  • Maliekal , JC , Jackson , GE , Flanagan , CA and Millar , RP . 1997 . S. Afr. J. chem. , 50 : 217
  • Momany , FA . 1976 . J. Am. chem. Soc. , 98 : 2990
  • Wyttenbach , T , von Helden , G and Bowers , MT . 1996 . J. Am. chem. Soc. , 118 : 8355
  • Freitas , MA and Marshall , AG . 1999 . Int. J. mass Spectrom. , 182 : 221
  • Strittmatter , EF and Williams , ER . 2000 . J. phys. Chem. A , 104 : 6069
  • Turecek , F and Syrstad , EA . 2003 . J. Am. chem. Soc. , 125 : 3353
  • Roepstorff , P and Fohlmann , J . 1984 . J. biomed. Mass Spectrom. , 11 : 601
  • Cooper , HJ , Hudgins , RR , Hakansson , K and Marshall , AG . 2002 . J. Am. Soc. Mass Spectrom. , 13 : 241

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.