References
- Danilov , VI . 1975 . Mol. Biol. Rep. , 2 : 263
- Pullman , A and Pullman , B . 1968 . Adv. Quantum Chem. , 4 : 267
- Šponer , J , Jurečka , P and Hobza , P . 2006 . Computational Studies of RNA and DNA , Edited by: Šponer , J and Lankaš , F . Dordrecht : Springer .
- Šponer , J , Jurečka , P Marchan , I . 2006 . Chem. Eur. J. , 12 : 2854
- Ts'o , POP . 1974 . Basic Principles in Nucleic Acid Chemistry , Edited by: Ts'o , Paul OP . 453 London and New York : Academic Press .
- Herskovits , TT , Singer , SJ and Geiduschek , EP . 1961 . Arch. Biochem. Biophys. , 94 : 99
- Hanlon , S . 1966 . Biochem. Biophys. Res. Commun. , 23 : 861
- Newcomb , LF and Gellman , SH . 1994 . J. Am. Chem. Soc. , 116 : 4993
- Sinanoğlu , O . 1968 . Molecular Associations in Biology , Edited by: Pullman , B . 427 New York : Academic Press .
- Sinanoğlu , O and Abdulnur , S . 1965 . Fed. Proc. , 24 ( Suppl. 15 ) : S12
- Pohorille , A , Pratt , LR Burt , SK . 1984 . J. Biomol. Struct. Dyn. , 1 : 1257
- Cantor , CR and Schimmel , PR . 1980 . Biophysical Chemistry, Part I. The Conformation of Biological Macromolecules , San Francisco : W.H. Freeman and Co. .
- Danilov , VI , Tolokh , IS and Biomol , J . 1984 . Struct. Dyn. , 2 : 119
- Danilov , VI , Danilov , VI , Tolokh , IS Polter , VI . 1984 . FEBS Lett. , 167 : 245
- Danilov , VI , Tolokh , IS and Poltev , VI . 1984 . FEBS Lett. , 167 : 325
- Danilov , VI and Tolokh , IS . 1984 . FEBS Lett. , 173 : 347
- Cieplak , P and Kollman , PA . 1988 . J. Am. Chem. Soc. , 110 : 3734
- Dang , LX and Kollman , PA . 1990 . J. Am. Chem. Soc. , 112 : 503
- Friedman , RA and Honig , B . 1995 . Biophys. J. , 69 : 1528
- Guckian , KM , Schweitzer , BA Ren , RXF . 2000 . J. Am. Chem. Soc. , 122 : 2213
- Protozanova , E , Yakovchuk , P and Frank-Kamenetskii , MD . 2004 . J. Mol. Biol. , 342 : 775
- Yakovchuk , P , Protozanova , E and Frank-Kamenetskii , MD . 2006 . Nucleic Acids Res. , 34 : 564
- Stewart , JJP . 2007 . J. Mol. Model. , 13 : 1173
- Mourik , Tvan , Danilov , VI Gonzales , E . 2007 . Chem. Phys. Lett. , 445 : 305
- Nakano , NI and Igarashi , SJ . 1970 . Biochemistry , 9 : 577
- Sapper , H and Lohmann , W . 1978 . Biophys. Struct. Mech. , 4 : 327
- Ben-Naim , A . 2006 . Molecular Theory of Solutions , New York : Oxford University Press .
- Ben-Naim , A . 1987 . Solvation Thermodynamics , New York : Plenum Press .
- Ben-Naim , A . 1978 . J. Phys. Chem. , 82 : 792
- Šponer , J , Leszczynski , J and Hobza , P . 1996 . J. Phys. Chem. , 100 : 5590
- Stewart , JPP . 2007 . MOPAC2007 , Colorado Springs, CO , , USA : Stewart Computational Chemistry . http://OpenMOPAC.net
- Hetzer , G , Pulay , P and Werner , H-J . 1998 . Chem. Phys. Lett. , 290 : 143
- Hetzer , G , Schütz , M Stoll , H . 2000 . J. Chem. Phys. , 113 : 9443
- Schütz , M , Hetzer , G and Werner , H-J . 1999 . J. Chem. Phys. , 111 : 5691
- Werner , H-J , Manby , FR and Knowles , PJ . 2003 . J. Chem. Phys. , 118 : 8149
- Zhao , Y , Schultz , NE and Truhlar , DG . 2006 . J. Chem. Theor. Comput. , 2 : 364
- Zhao , Y and Truhlar , DG . Theor. Chem. Acc. , (in press)