Publication Cover
Molecular Physics
An International Journal at the Interface Between Chemistry and Physics
Volume 95, 1998 - Issue 6
40
Views
0
CrossRef citations to date
0
Altmetric
Original Articles

NMR structure calculation methods for large proteins Application of torsion angle dynamics and distance geometry/simulated annealing to the 269-residue protein serine protease PB92

, , , &
Pages 1099-1112 | Received 31 Mar 1998, Accepted 10 Aug 1998, Published online: 01 Sep 2009

References

  • Bax , A. and Grzesiek , S. 1993 . Accounts chem. Res. , 26 : 131
  • Shan , X. , Gardner , K. H. , Muhandiram , D. R. , Rao , N. S. , Arrowsmith , C. H. and Kay , L. E. 1996 . J. Amer. chem. Soc , 118 : 6570
  • Zhang , H. , Zhao , D. , Revington , M. , Lee , W. , Jia , X. , Arrowsmith , C. and Jardetzky , O. 1994 . J. molec. Biol. , 238 : 592
  • Matsuo , H. , Li , H. , McGuire , A. M. , Fletcher , C. M. , Gingras , A.-C. , Sonenberg , N. and Wagner , G. 1997 . Nature struct. Biol. , 4 : 717
  • van den Berg , B. , Tessari , M. , Boelens , R. , Dijkman , R. , Kaptein , R. , De Haas , G. H. and Verheij , H. M. 1995 . J. biomolec. NMR , 5 : 110
  • Garrett , D. S. , Seok , Y.-J. , Liao , D.-L. , Peterkofsky , A. , Gronenborn , A. M. and Clore , G. M. 1997 . Biochemistry , 36 : 2517
  • Martin , J. R. , Mulder , F. A. A. , Karimi-Nejad , Y. V.D. , Zwan , J. , Mariani , M. , Schipper , D. and Boelens , R. 1997 . Structure , 5 : 521
  • Güntert , P. , Berndt , K. D. and Wüthrich , K. 1993 . J. biomolec. NMR , 3 : 601
  • Meadows , R. P. , Olejniczak , E. T. and Fesik , S. W. 1994 . J. biomolec. NMR , 4 : 79
  • Rice , L. M. and Brünger , A. T. 1994 . Proteins , 19 : 277
  • Stein , E. G. , Rice , L. M. and Brünger , A. T. 1997 . J. magn. Reson. , 124 : 154
  • Nilges , M. , Clore , G. M. and Gronenborn , A. M. 1988 . FEBS Lett. , 229 : 317 Nilges, M., Gronenborn, A. M., Brünger, A. T., and Clore, G. M., 1988, Protein Eng. 2, 27.
  • Nilges , M. , Kuszewski , J. and Brünger , A. T. 1991 . Computational Aspects of the Study of Biological Macromolecules by Nuclear Magnetic Resonance Spectroscopy Edited by: Hoch , J. C. , Poulsen , F. M. and Redfield , C. 451 New York : Plenum Press .
  • Kuszewski , J. , Nilges , M. and Brünger , A. T. 1992 . J. biomolec. NMR , 2 : 33
  • Teplyakov , A. V. , van der Laan , J. M. , Lammers , A. A. , Kelders , H. , Kalk , K. H. , Misset , O. , Mulleners , L. J. S. M. and Dijkstra , B. W. 1992 . Protein Eng. , 5 : 413
  • Fogh , R. H. , Schipper , D. , Boelens , R. and Kaptein , R. 1995 . J. biomolec. NMR , 5 : 259
  • Neri , D. , Szyperski , T. , Otting , G. , Senn , H. and Wüthrich , K. 1989 . Biochemistry , 28 : 7510
  • Santoro , J. and King , G. C. 1992 . J. magn. Reson. , 97 : 202
  • Vuister , G. W. and Bax , A. 1992 . J. magn. Reson. , 98 : 428
  • Kuboniwa , H. , Grzesiek , S. , Delaglio , F. and Bax , A. 1994 . J. biomolec. NMR , 4 : 981
  • Constantine , K. L. , Madrid , M. , Bányai , L. , Trexler , M. , Patthy , L. and LlináS , M. 1992 . J. molec. AW. , 223 : 281
  • Koning , T. M. G. , Boelens , R. and Kaptein , R. 1990 . J. magn. Reson. , 90 : 111
  • Wüthrich , K. , Billeter , M. and Braun , W. 1983 . J. molec. Biol. , 169 : 969
  • Güntert , P. , Braun , W. and Wüthrich , K. 1991 . J. molec. Biol. , 217 : 517
  • Wüthrich , K. 1986 . NMR of Proteins and Nucleic Acids New York : Wiley .
  • Billeter , M. , Neri , D. , Otting , G. , Qian , Y. Q. and Wüthrich , K. 1992 . J. biomolec. NMR, 2 , 257.
  • Harbison , G. S. 1993 . J. Amer. chem. Soc , 115 : 3026
  • Case , D. A. , Dyson , H. J. and Wright , P. E. 1995 . Methods Enzymol , 239 : 392
  • Brünger , A. T. 1992 . X-PLOR, Version 3.1, a system for X-ray crystallography and NMR New Haven, CT : Yale University Press .
  • Engh , R. A. and Huber , R. 1991 . Acta Crystallogr. A , 47 : 392
  • Koradi , R. , Billeter , M. and Wüthrich , K. 1996 . J. molec. Graph. , 14 : 51
  • Widmer , H. , Widmer , A. and Braun , W. 1993 . J. biomolec. NMR , 3 : 307
  • Laskowski , R. A. , Rullmann , J. A. C. , Macarthur , M. W. , Kaptein , R. and Thornton , J. 1996 . J. biomolec. NMR , 8 : 477
  • Lüthy , R. , Bowie , J. U. and Eisenberg , D. 1992 . Nature , 356 : 83
  • van der Laan , J. M. , Teplyakov , A. V. , Kelders , H. , Kalk , K. H. , Misset , O. , Mulleners , L. J. S. M. and Dijkstra , B. W. 1992 . Protein Eng. , 5 : 405
  • Siezen , R. J. and Leunissen , J. A. M. 1997 . Protein Sci. , 6 : 501
  • Warren , G. and Brünger , A. T. unpublished.
  • Brünger , A. T. and Nilges , M. 1993 . Quart. Rev. biophys. , 26 : 49

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.