Phylogenetic relationships in Ganoderma inferred from the internal transcribed spacers and 25S ribosomal DNA sequences

LITERATURE CITED

• Adaskaveg, J. E., and R. L. Gilbertson. 1986. Cultural studies and genetics of sexuality of Ganoderma lucidum and G. tsugae in relation to the taxonomy of the G. lucidum complex. Mycologia 78: 694–705.
   Web of Science ®Google Scholar
• Anderson, J. B., and E. Stasovski. 1992. Molecular phylogeny of northern hemisphere species of Armillaria. Mycologia 84: 505–516.
   Web of Science ®Google Scholar
• Bakshi, B. K., M. A. R. Reddy, and S. Singh. 1976. Ganoderma root rot mortality in khair (Acacia catechu Willd.) in reforested stands. Eur. J. Forest Pathol. 6: 30–38.
   Google Scholar
• Baura, G., T. M. Szaro, and T.D. Bruns. 1992. Gastrosuillus laricinus is a recent derivative of Suillus grevillei: molecular evidence. Mycologia 84: 592–597.
   Web of Science ®Google Scholar
• Bazzalo, M. E., and J. E. Wright. 1982. Survey of the Argentine species of the Ganoderma lucidum complex. Mycotaxon 16: 293–325.
   Web of Science ®Google Scholar
• Bruns, T. D., and T. M. Szaro. 1992. Rate and mode differences between nuclear and mitochondrial small sub- unit rRNA genes in mushrooms. Molec. Biol. Evol. 9: 836–855.
   PubMed Web of Science ®Google Scholar
• Bruns, T. D., and T. M. Szaro, R. Vilgalys, S. M. Barns, D. Gonzales, D. S. Hibbett, D. J. Lane, L. Simon, S. Stickel, T. M. Szaro, W. G. Weisburg, and M. L. Sogin. 1992. Evolutionary relationships within the fungi: analyses of nuclear small subunit rRNA sequences. Molec. Phylogenet. Evol. 1: 231–241
   PubMed Web of Science ®Google Scholar
• Bruns, T. D., and T. M. Szaro, R. Vilgalys, S. M. Barns, D. Gonzales, D. S. Hibbett, D. J. Lane, L. Simon, S. Stickel, T. M. Szaro, W. G. Weisburg, and M. L. Sogin, T. J. White, and J. W. Taylor. 1991. Fungal molecular systematics. Annual Rev. Ecol. Syst. 22: 525–564.
   Google Scholar
• Bull, J. J., J. P. Huelsenbeck, C. W. Cunningham, D. L. Swofford, and P. J. Waddell. 1993. Partitioning and combining data in phylogenetic analysis. Syst. Biol. 42: 384–397.
   Web of Science ®Google Scholar
• Carbone, I., and L. M. Kohn. 1993. Ribosomal DNA sequence divergence within internal transcribed spacer 1 of the Sclerotiniaceae. Mycologia 85: 415–427.
   Web of Science ®Google Scholar
• Chen, C. S. 1993. Methods for inducing various morphological fruiting body of Ganoderma tsugae Murr. Trans. Mycol. Soc. Republ. China 8: 9–16.
   Google Scholar
• Chippindale, P. T., and J. J. Wiens. 1994. Weighting, partitioning, and combining characters in phylogenetic analysis. Syst. Biol. 43: 278–287.
   Web of Science ®Google Scholar
• Corner, E. J. H. 1983. Ad Polyporaceas I. Amauroderma and Ganoderma. Beih. Nova Hedwigia. 75 1–182.
   Google Scholar
• de Queiroz, A. 1993. For consensus (sometimes). Syst. Biol. 42: 368–372.
   Web of Science ®Google Scholar
• Donk, M. A. 1964. A conspectus of the families of Aphyllophorales. Persoonia 3: 199–324.
   Google Scholar
• Felsenstein, J. 1978. Cases in which parsimony or compatibility methods will be positively misleading. Syst. Zool. 27: 401–410.
   Google Scholar
• Furtado, J. S. 1965. Relation of microstructures to the taxonomy of the Ganodermoideae (Polyporaceae) with special reference to the structure of the cover of the pilear surface. Mycologia 57: 588–611.
   Web of Science ®Google Scholar
• Guadet, J., J. Julien, J. F. Lafay, and Y. Brygoo. 1989. Phylogeny of some Fusarium species, as determined by large-subunit rRNA sequence comparison. Molec. Biol. Evol. 6: 227–242.
   PubMed Web of Science ®Google Scholar
• Gutell, R. R., and G. Fox. 1988. A compilation of large subunit RNA sequences presented in a structural format. Nucl. Acids Res. 16: rl75–r269.
   Web of Science ®Google Scholar
• Hibbett, D. S. 1992. Ribosomal RNA and fungal systematics. Trans. Mycol. Soc. Japan 33: 533–556.
   Google Scholar
• Hibbett, D. S., and R. Vilgalys. 1993. Phylogenetic relationships of Lentinus (Basidiomycotina) inferred from molecular and morphological characters. Syst. Bot. 18: 409–433.
   Web of Science ®Google Scholar
• Hseu, R. S. 1990. An identification system for cultures of Ganoderma species. Ph.D. Dissertation, National Taiwan University, Taipei, Taiwan, Republic of China. 169 pp. (In Chinese)
   Google Scholar
• Hseu, R. S., Z. C. Chen, and H. H. Wang. 1989. Ganoderma microsporum, a new species on weeping willow in Taiwan. Mycotaxon 25: 35–40.
   Google Scholar
• Imazeki, R. 1939. Studies in Ganoderma of Nippon. Bull. Tokyo Sci. Mus. 1: 29–52.
   Google Scholar
• Imazeki, R.. 1952. A contribution to the fungus flora of Dutch New Guinea. Bull. Gov. Forest Exp. Sta. 57: 87–128.
   Google Scholar
• Jong, S. C., and J. M. Birmingham. 1992. Medicinal benefits of the mushroom Ganoderma. Adv. Appl. Microbiol. 37: 101–134.
   PubMed Web of Science ®Google Scholar
• Karsten, P. A. 1881. Enumeratio boletinearum et polyporearum fennicarum. Systemate novo dispositarum. Rev. Mycol. 3: 16–19.
   Google Scholar
• Karsten, P. A.. 1889. Symbolae ad Mycologicam XXIX. Soc. Fauna Flora Fenn. Meddel. 16: 84–106.
   Google Scholar
• Kim, W. K. 1992. A region of heterogeneity adjacent to the 5S ribosomal RNA gene of cereal rusts. Curr. Genet. 22: 101–105.
   PubMed Web of Science ®Google Scholar
• Kurtzman, C. P. 1992a. rRNA sequence comparisons for assessing phylogenetic relationships among yeasts. Int. J. Syst. Bacteriol. 42: 1–6.
   PubMedGoogle Scholar
• Kurtzman, C. P.. 1992b. Molecular systematics of yeasts. Pp. 220–228. In: Proc. Asian Mycol. Symp., Oct. 1–4 1992. Korean Soc. of Mycology, Seoul, Korea.
   Google Scholar
• Lee, S. B., and J. W. Taylor. 1992. Phylogeny of five fungus-like protoctistan Phytophthora species, inferred from the internal transcribed spacers of ribosomal DNA. Molec. Biol. Evol. 9: 636–653.
   PubMed Web of Science ®Google Scholar
• LoBuglio, K. F., J. I. Pitt, and J. W. Taylor. 1993. Phylogenetic analysis of two ribosomal DNA regions indicates multiple independent losses of a sexual Talaromyces state among asexual Penicillium species in subgenus Biverticillium. Mycologia 85: 592–604.
   Web of Science ®Google Scholar
• Mahmood, T. 1971. Ganoderma lucidum: a virulent incitant of basal stem rot, a malady of hardwoods in West Pakistan. Pl. Dis. Reporter 55: 1130–1131.
   Web of Science ®Google Scholar
• Michot, B., N. Hassouna, and J. Bachellerie. 1984. Secondary structure of mouse 28S rRNA and a general model for the folding of the large rRNA in eucaryotes. Nucl. Acids Res. 12: 4259–4279.
   PubMed Web of Science ®Google Scholar
• Mishler, B. D. 1994. The cladistic analysis of molecular and morphological data. Amer. J. Phys. Anthropol. (In press)
   Google Scholar
• Mishler, B. D., K. Bremer, C. J. Humphries, and S. P. Churchill. 1988. The use of nucleic acid sequence data in phylogenetic reconstruction. Taxon 37: 391–395.
   Web of Science ®Google Scholar
• Mishler, B. D., K. Bremer, C. J. Humphries, and S. P. Churchill, M. J. Donoghue, and V. A. Albert. 1991. The decay index as a measure of relative robustness within a cladogram. Hennig X, Toronto, Ontario. (Abstract)
   Google Scholar
• Moncalvo, J. M. 1995. Evaluation of fungal biological diversity in the tropics: systematics perspectives. In: Tropical mycology, Eds., K. K. Janardhanan, and C. Rajendran. (In press)
   Google Scholar
• Moncalvo, J. M., S. R. Rehner, and R. Vilgalys. 1993. Systematics of Lyophyllum section Difformia based on evidence from culture studies and ribosomal DNA sequences. Mycologia 85: 788–794.
   Web of Science ®Google Scholar
• Murrill, W. A. 1905a. The Polyporaceae of North America. XI. A synopsis of the brown pileate species. Bull. Torrey Bot. Club 32: 353–371.
   Google Scholar
• Murrill, W. A.. 1905b. Tomophagus for Dendrophagus. Torreya 5: 197.
   Google Scholar
• Nobles, M. K. 1948. Studies in forest pathology. VI. Identification of culture of wood-rotting fungi. Canad. J. Res. 26: 281–431.
   PubMed Web of Science ®Google Scholar
• O'Donnell, K. L. 1992. Ribosomal DNA internal transcribed spacers are highly divergent in the phytopathogenic ascomycete Fusarium sambucinum (Gibberella pulicaris). Curr. Genet. 22: 213–220.
   PubMed Web of Science ®Google Scholar
• Otjen, L., and R. Blanchette. 1987. Assessment of 30 white rot basidiomycetes for selective lignin degradation. Holzforschung 41: 343–349.
   Web of Science ®Google Scholar
• Patouillard, N. 1889. Le genre Ganoderma. Bull. Soc. Mycol. France 5: 64–80.
   Google Scholar
• Peng. J. T. 1990. Identification and culture conservation of the mild Ganoderma species in Taiwan. Publ. Taiwan Agric. Res. Inst. (TARI), Wufeng, Taiwan, Republic of China. 155 pp. (In Chinese)
   Google Scholar
• Raeder, U., and P. Broda. 1985. Rapid preparation of DNA from filamentous fungi. Lett. Appl. Microbiol. 1: 17–20.
   Web of Science ®Google Scholar
• Ross, W. D. 1976. Relation of aspen root size to infection by Ganoderma applanatum. Canad. J. Bot. 54: 745–751.
   Google Scholar
• Ryvarden, L. 1991. Genera of polypores. Nomenclature and taxonomy. Synopsis fungorum 5. Fungiflora, Oslo, Norway. 363 pp.
   Google Scholar
• Sanger, F., S. Nicklen, and A. R. Coulson. 1977. DNA sequencing with chain terminating inhibitors. Proc. Natl. Acad. Sci. USA 74: 5463–5467.
   PubMed Web of Science ®Google Scholar
• Sawada, K. 1931. Descriptive catalogue of the Formosan fungi. Formosa Gov. Res. Inst., Dept. Agric. Rep. 51: 76–78. (In Japanese)
   Google Scholar
• Sawada, K.. 1942. Descriptive catalogue of the Formosan fungi. Formosa Gov. Res. Inst., Dept. Agric. Rep. 83: 101–110. (In Japanese)
   Google Scholar
• Stalpers, J. A. 1978. Identification of wood-inhabiting fungi in pure culture. Stud. Mycol. 16: 1–248.
   Google Scholar
• Steyaert, R. L. 1967. Les Ganoderma palmicoles. Bull. Jard. Bot. Belg. 37: 465–492.
   Google Scholar
• Steyaert, R. L.. 1972. Species of Ganoderma and related genera mainly of the Bogor and Leiden herbaria. Persoonia 7: 55–118.
   Google Scholar
• Steyaert, R. L.. 1975. The concept and circumscription of Ganoderma tornatum. Trans. Brit. Mycol. Soc. 65: 451–467.
   Web of Science ®Google Scholar
• Steyaert, R. L.. 1980. Study of some Ganoderma species. Bull. Jard. Bot. Belg. 50: 135–186.
   Google Scholar
• Swofford, D. L. 1990. PAUP 3.0. Phylogenetic analysis using parsimony. Illinois Natural History Survey, Champaign, Illinois.
   Google Scholar
• Swofford, D. L., and G.J. Olsen. 1990. Phylogeny reconstruction. Pp. 411–501. In: Molecular systematics. Eds., D. M. Hillis, and C. Moritz. Sinauer, Sunderland, Massachusetts.
   Google Scholar
• Taylor, J. W., T. D. Bruns, and T.J. White. 1990. Can the amount of molecular divergence define species and genera: comparison between Sordariales and Agaricales? p. 343. 4th Int. Mycol. Congr., Regensburg, Germany. (Abstract)
   Google Scholar
• Vilgalys, R., and M. Hester. 1990. Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. J. Bacteriol. 172: 4238–4246.
   PubMed Web of Science ®Google Scholar
• Wang, B. C., and J. Hua. 1991. A cultural atlas of some Ganoderma cultures. Publ. Food Industr. Res. Developm. Inst. (FIRDI), Hsinchu, Taiwan, Republic of China. 131 pp.
   Google Scholar
• Yeh, Z. Y. 1990. Taxonomic study of Ganoderma australe complex in Taiwan. Ph.D. Dissertation, National Taiwan University, Taipei, Taiwan, Republic of China. 110 pp. (In Chinese)
   Google Scholar
• Zambino, P. J., and L. J. Szabo. 1993. Phylogenetic relationships of selected cereal and grass rusts based on rDNA sequence analysis. Mycologia 85: 401–414.
   Web of Science ®Google Scholar
• Zhao, J. D. 1989. The Ganodermataceae in China. Biblioth. Mycol. 132: 1–176.
   Google Scholar
• Zhao, J. D., L. W. Xu, and X. Q. Zhang. 1979. Taxonomic studies on the subfamily Ganodermatoideae of China. Acta Microbiol. Sin. 19: 265–279.
   Google Scholar