Phylogenetic analysis of Trichaptum based on nuclear 18S, 5.8S and ITS ribosomal DNA sequences

LITERATURE CITED

• Arora, D. 1986. Mushrooms demystified. 2nd ed. Ten Speed Press, Berkeley, California. 959 pp.
   Google Scholar
• Baura, G., T. M. Szaro, and T. D. Bruns. 1992. Gastrosuillus laricinus is a recent derivative of Suillus grevillei: molecular evidence. Mycologia 84: 592–597.
   Web of Science ®Google Scholar
• Berbee, M. L., and J. W. Taylor. 1992. Two ascomycete classes based on fruiting-body characters and ribosomal DNA sequence. Mol. Biol. Evol. 9: 278–284.
   PubMed Web of Science ®Google Scholar
• Berbee, M. L., and J. W. Taylor. 1993. Dating the evolutionary radiations of the true fungi. Can. J. Bot. 71: 1114–1127.
   Google Scholar
• Berbee, M. L., and J. W. Taylor, A. Yoshimura, and J. W. Taylor. 1995. Is Penicillium monophyletic? An evaluation of phylogeny in the family Trichocomaceae from 18S, 5.8S and ITS ribosomal DNA sequence data. Mycologia 87: 210–222.
   Web of Science ®Google Scholar
• Bowman, B. H., J. W. Taylor, and T. J. White. 1992. Molecular evolution of the fungi: human pathogens. Mol. Biol. Evol. 9: 893–904.
   PubMed Web of Science ®Google Scholar
• Bruns, T. D., and T. M. Szaro. 1992. Rate and mode differences between nuclear and mitochondrial small-sub-unit rRNA genes in mushrooms. Mol. Biol. Evol. 9: 836–855.
   PubMed Web of Science ®Google Scholar
• Bruns, T. D., and T. M. Szaro, R Vilgalys, S. M. Barns, D. Gonzalez, D. S. Hibbett, D. J. Lane, L. Simon, S. Stickel, T. M. Szaro, W. G. Weisburg, and M. L. Sogin. 1992. Evolutionary relationships within the fungi: analyses of nuclear small subunit rRNA sequences. Mol. Phylogenet. Evol. 1: 231–241.
   PubMed Web of Science ®Google Scholar
• Carbone, I., and L. M. Kohn. 1993. Ribosomal DNA sequence divergence within internal transcribed spacer 1 of the Sclerotiniaceae. Mycologia 85: 415–427.
   Web of Science ®Google Scholar
• Curtis, M. D., J. Gore, and R. P. Oliver. 1994. The phylogeny of the tomato leaf mould fungus Cladosporium fulvum syn. Fulva by analysis of rDNA sequences. Curr. Genet. 25: 318–322.
   PubMed Web of Science ®Google Scholar
• Donk, M. A. 1971. Multiple convergence in the polyporaceous fungi. Pp. 393–422. In: Evolution in the higher Basidiomycetes. Ed., R. H. Petersen. The University of Tennessee Press, Knoxville, Tennessee.
   Google Scholar
• Egger, K. N., and L. Sigler. 1993. Relatedness of the ericoid endophytes Scytalidium vaccinii and Hymenoscyphus ericae inferred from analysis of ribosomal DNA. Mycologia 85: 219–230.
   Web of Science ®Google Scholar
• Felsenstein, J. 1993. PHYLIP (Phylogeny inference package) version 3.5c. Department of Genetics SK-50. University of Washington, Seattle.
   Google Scholar
• Fitch, W. M. 1966. An improved method of testing for evolutionary homology. J. Mol. Biol. 16: 9–16.
   PubMedGoogle Scholar
• Gargas, A., and P. T. DePriest. 1995. Phylogeny of Discomycetes and early radiations of the apothecial Ascomycotina inferred from SSU rDNA sequences data. Exp. Mycol. 19: 7–15.
   PubMedGoogle Scholar
• Gargas, A., and P. T. DePriest, P. T. DePriest, M. Grube, and A. Tehler. 1995. Multiple origins of lichen symbioses in fungi suggested by SSU rDNA phylogeny. Science 268: 1492–1495.
   PubMed Web of Science ®Google Scholar
• Gargas, A., and P. T. DePriest, P. T. DePriest, M. Grube, and A. Tehler, and J. W. Taylor. 1992. Polymerase chain reaction (PCR) primers for amplifying and sequencing nuclear 18S rDNA from lichenized fungi. Mycologia 84: 589–592.
   Web of Science ®Google Scholar
• Gilbertson, R. L., and L. Ryvarden. 1986. North American polypores. Vol. 1. Abortiporus—Lindtneria. Fungiflora, Oslo, Norway. 433 pp.
   Google Scholar
• Gilbertson, R. L., and L. Ryvarden. 1987. North American polypores. Vol. 2. Megasporoporia—Wrightoporia. Fungiflora, Oslo, Norway. 451 pp.
   Google Scholar
• Haqqi, T. M. 1992. Direct ligation of PCR products of cloning and sequencing. Nucl. Adds Res. 20: 23.
   Google Scholar
• Hibbett, D. S. 1996. Phylogenetic evidence for horizontal transmission of group I introns in the nuclear ribosomal DNA of mushroom-forming fungi. Mol. Biol. Evol. 13: 903–917.
   PubMed Web of Science ®Google Scholar
• Hibbett, D. S., and M. J. Donoghue. 1995. Progress toward a phylogenetic analysis of the Polyporaceae through parsimony analysis of mitochondrial ribosomal DNA sequences. Can. J. Bot. 73 (Suppl. 1): S853–S861.
   Google Scholar
• Hillis, D. M., and C. Moritz. 1990. Molecular systematics. Sinauer Associates, Inc., Sunderland, Massachusetts. 588 pp.
   Google Scholar
• Illingworth, G. A., J. H. Andrews, C. Bibeau, and M. L. Sogin. 1991. Phylogenetic placement of Athelia bombacino, Aureobasidium puppulans, and Colletotrichum gloeosporioides inferred from sequence comparisons of small-subunit ribosomal RNAs. Exp. Mycol. 15: 65–75.
   Google Scholar
• Jung, H. S. 1991. Fungal flora of Kwanak Mountain. Proc. Coll. Natur. Sci., SNU 16: 35–71.
   Google Scholar
• Lecellier, G., and P. Silar. 1994. Rapid methods for nucleic acids extraction from petri dish-grown mycelia. Curr. Genet. 25: 122–123.
   PubMed Web of Science ®Google Scholar
• LoBuglio, K. F., J. I. Pitt, and J. W. Taylor. 1993. Phylogenetic analysis of two ribosomal DNA regions indicates multiple dependent losses of sexual Talaromyces state among asexual Penicillium species in subgenus Biverticillium. Mycologia 85: 592–604.
   Web of Science ®Google Scholar
• Macrae, R. 1967. Pairing incompatibility and other distinctions among Hirschioporus abietinus, H. fusco-violaceus, and H. laricinus. Can. J. Bot. 45: 1227–1398.
   Google Scholar
• Magasi, L. P. 1976. Incompatibility factors in Polyporus abietinus, their numbers and distributions. Mem. N. Y. Bot. Gard. 28: 163–173.
   Google Scholar
• Marchuk, D., M. Drumm, A. Saulino, and F. S. Collins. 1991. Construction of T-vectors, a rapid and general system for direct cloning of unmodified PCR products. Nucl. Acids Res. 19: 1154.
   PubMed Web of Science ®Google Scholar
• Moncalvo, J. M., H. H. Wang, and R. S. Hseu. 1995. Phylogenetic relationships in Ganoderma inferred from the internal transcribed spacers and 25S ribosomal DNA sequences. Mycologia 87: 223–238.
   Web of Science ®Google Scholar
• Morales, V. M., L. E. Pelcher, and J. W. Taylor. 1993. Comparison of the 5.8S rDNA and internal transcribed spacer sequences of isolates of Leptosphaeria maculans from different pathogenicity groups. Curr. Genet. 23: 490–495.
   PubMed Web of Science ®Google Scholar
• Raeder, U., and P. Broda. 1985. Rapid preparation of DNA from filamentous fungi. Lett. Appl. Microbiol. 1: 17–20.
   Web of Science ®Google Scholar
• Ryvarden, L. 1991. Genera of polypores: nomenclature and taxonomy. Syn. Fung. 5: 1–363.
   Google Scholar
• Ryvarden, L., and R. L. Gilbertson. 1993. European polypores. Part 1. Abortiporus—Lindtneria. Syn. Fung. 6: 1–387.
   Google Scholar
• Ryvarden, L., and R. L. Gilbertson. 1994. European polypores. Part 2. Meripilus—Tyromyces. Syn. Fung. 6: 388–743.
   Google Scholar
• Sanger, F., S. Nicklen, and A. R. Coulson. 1977. DNA sequencing with chain-terminating inhibitors. Proc. Nat. Acad. Sd. U.S.A. 74: 5463–5467.
   PubMedGoogle Scholar
• Sherriff, C., M. J. Whelan, G. M. Arnold, and J. A. Bailey. 1995. rDNA sequence analysis confirms the distinction between Colletotrichum graminicola and C. sublineolum. Mycol. Res. 99: 475–478.
   Web of Science ®Google Scholar
• Swann, E., and J. W. Taylor. 1993. Higher taxa of Basidiomycetes: an 18S rRNA gene perspective. Mycologia 85: 923–936.
   Web of Science ®Google Scholar
• Swofford, D. L. 1993. PAUP: phylogenetic analysis using parsimony, version 3.1.1. Illinois Natural History Survey, Champaign, Illinois.
   Google Scholar
• Thompson, J. D., D. G. Higgins, and T. J. Gibson. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucl. Acids Res. 22: 4673–4680.
   PubMed Web of Science ®Google Scholar
• Traquair, J. A., and W. E. McKeen. 1978. Ultrastructure of the dolipore septum in Hirschioporus pergamenus (Polyporaceae). Can. J. Microbiol. 24: 767–771.
   PubMedGoogle Scholar
• White, T. J., T. D. Bruns, S. Lee, and J. W. Taylor. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. Pp. 315–322. In: PCR protocols: a guide to methods and applications. Eds., M. A. Innis, D. H. Gelfand, J. J. Sninsky, and T.J. White. Academic Press, Inc., San Diego, California.
   Google Scholar
• Yan, Z. H., S. O. Rogers, and C. J. K. Wang. 1995. Assessment of Phialophora species based on ribosomal DNA internal transcribed spacers and morphology. Mycologia 87: 72–83.
   Web of Science ®Google Scholar
• Zambino P. J., and L. J. Szabo. 1993. Phylogenetic relationships of selected cereal and grass rusts based on rDNA sequence analysis. Mycologia 85: 401–414.
   Web of Science ®Google Scholar