Molecular phylogenetic analysis of Peziza and related genera

LITERATURE CITED

• Arpin N. 1969. Les caroténoides des Discomycètes: Essai chimiotaxinomique. Bull Soc Linn Lyon 38 (Suppl):1–169.
   Google Scholar
• Berthet P. 1964. Formes conidiennes de divers Discomycètes. Bull Soc Mycol France 80: 125–149.
   Google Scholar
• Boudier JLE. 1885. Nouvelle classification naturelle des Discomycètes charnus. Bull Soc Mycol France 1: 91–120.
   Google Scholar
• Boudier JLE. 1907. Histoire et classification des Discomycètes d'Europe. Paris, France: Klinckwieck. 221 p.
   Google Scholar
• Brummelen J van. 1998. Two bizarre ascus apices of Pezizales revealed by their ultrastructure. Cryptog Bryol Lichenol 19: 257–265.
   Web of Science ®Google Scholar
• Bruns TD, Fogel R, White TJ, Palmer JD. 1989. Accelerated evolution of a false-truffle from a mushroom ancestor. Nature 339: 140–142.
   PubMed Web of Science ®Google Scholar
• Cao Y, Adachi J, Hasegawa M. 1998. Comment on the quartet puzzling method for finding maximum-likelihood tree topologies. Mol Biol Evol 15: 87–89.
   Web of Science ®Google Scholar
• Dennis RWG. 1978. British Ascomycetes. Vaduz, Germany: J. Cramer. 585 p.
   Google Scholar
• Dissing, H. 1974. Plicaria acanthodictya, a new fireplace Discomycete from Denmark. Bull Soc Linn Lyon (Numero special):139–146.
   Google Scholar
• Dissing, H., Korf RP. 1980. Preliminary studies in the genera Ruhlandiella, Sphaerosoma, and Sphaerozone (order Pezizales). Mycotaxon 12: 287–306.
   Web of Science ®Google Scholar
• Dissing, H., Korf RP., Pfister DH. 1981. Scabropezia, a new genus of Pezizaceae (Pezizales). Nord J Bot 1: 102–108.
   Google Scholar
• Eckblad FE. 1968. The genera of the operculate Discomycetes. A re-evaluation of their taxonomy, phylogeny, and nomenclature. Nytt Mag Bot 10: 137–158.
   Google Scholar
• Egger KN. 1995. Molecular analysis of ectomycorrhizal fungal communities. Can J Bot 73 (Suppl. 1):S1415–S1422.
   Google Scholar
• Egger KN., Fortin JA. 1990. Identification of taxa of E-strain mycorrhizal fungi by restriction fragment analysis. Can J Bot 68: 1482–1488.
   Google Scholar
• Egger KN., Fortin JA., Sigler L. 1993. Relatedness of the ericoid endophytes Scytalidium vaccinii and Hymenoscyphus ericae inferred from analysis of ribosomal DNA. Mycologia 85: 219–230.
   Web of Science ®Google Scholar
• Elliott ME, Kaufert M. 1973. Peziza badia and Peziza badioconfusa. Can J Bot 52: 467–472.
   Google Scholar
• Felsenstein J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 666–670.
   Web of Science ®Google Scholar
• Hennebert GL. 1973. Botrytis and Botrytis-like genera. Persoonia 7: 183–204.
   Google Scholar
• Hennebert GL., Korf RP. 1975. The peat mold, Chromelosporium ollare, conidial state of Peziza ostracoderma and its misapplied names, Botrytis crystallina, Botrytis spectabilis, Ostracoderma epigaeum and Peziza atrovinosa. Mycologia 67: 214–240.
   Web of Science ®Google Scholar
• Higgins DG, Bleasley AJ, Fuchs R. 1992. CLUSTAL V: improved multiple sequence alignment. CAMBIOS 8: 189–191.
   Google Scholar
• Hohmeyer H. 1986. Ein schlüssel zu den europäischen arten der gattung Peziza L. Z Mykol 52: 161–188.
   Google Scholar
• Kimbrough JW. 1970. Current trends in the classification of Discomycetes. Bot Rev 36: 9–161.
   Web of Science ®Google Scholar
• Kimbrough JW., Korf RP. 1967. A synopsis of the genera and species of the tribe Theleboleae (=Pseudoascoboleae). Am J Bot 54: 9–23.
   Web of Science ®Google Scholar
• Kimbrough JW., Korf RP., Wu C-G, Gibson JL. 1991. Ultrastructural evidence for a phylogenetic linkage of the truffle genus Hydnobolites to the Pezizaceae (Pezizales, Ascomycetes). Bot Gaz 152: 408–420.
   Web of Science ®Google Scholar
• Korf RP. 1972. Synoptic key to the genera of the Pezizales. Mycologia 64: 937–994.
   Web of Science ®Google Scholar
• Korf RP. 1973a. On Boudier's genus Lepidotia (Pezizaceae). Persoonia 7: 205–212.
   Google Scholar
• Korf RP. 1973b. Discomycetes and Tuberales. In: Ainsworth GC, Sparrow FK, Sussman AS, eds. The Fungi. IVA. New York, New York: Academic Press. p 249–319.
   Google Scholar
• Korf RP. 1994. Fifty years of fun with the Discomycetes, and what's left to do. New York, New York: Mycotaxon 18 p.
   Google Scholar
• Korf RP., Zhuang W-y. 1991. Kimbropezia and Pfistera, two new genera with bizarre ascus apices (Pezizales). Mycotaxon 40: 269–279.
   Web of Science ®Google Scholar
• Landvik S, Egger KN, Schumacher T. 1997. Towards a subordinal classification of the Pezizales. Nord J Bot 17: 403–418.
   Web of Science ®Google Scholar
• Landvik S, Egger KN, Schumacher T., Eriksson OE, Gargas A, Gustafsson P. 1993. Relationships of the genus Neolecta, (Neolectales ordo nov., Ascomycotina) inferred from 18S rDNA sequences. Syst Ascomycetum 11: 107–118.
   Google Scholar
• Le Gal M. 1941. Les Aleuria et les Galactinia. Rev Mycol 6 (Suppl.):56–82.
   Google Scholar
• Le Gal M. 1953. Les discomycetes de l'herbier Crouan. Rev Mycol 18: 73–132.
   Google Scholar
• Le Gal M. 1963. Valeur taxonomique particulière de certains caractères chez les Discomycètes supérieurs. Bull Soc Mycol France 79: 456–470.
   Google Scholar
• Maas Geesteranus RA. 1967. Studies in cup-fungi I. Persoonia 4: 417–425.
   Google Scholar
• Moravec J, Spooner BM. 1988. Peziza vacinii (Pezizales), with notes on taxonomy of related brown-spored species. Trans Br Mycol Soc 90: 43–48.
   Google Scholar
• Norman J, Egger KN. 1996. Phylogeny of the genus Plicaria and its relationship to Peziza inferred from ribosomal DNA sequence analysis. Mycologia 88: 986–995.
   Web of Science ®Google Scholar
• O'Donnell K, Cigelnik E, Weber NS, Trappe JM. 1997. Phylogenetic relationships among ascomycetous truffles and the true and false morels inferred from 18S and 28S ribosomal DNA sequence analysis. Mycologia 89: 48–65.
   Web of Science ®Google Scholar
• Paden JW. 1972. Imperfect states and the taxonomy of the Pezizales. Persoonia 6: 405–414.
   Google Scholar
• Percudani R, Trevisi A, Zambonelli A, Ottonello S. 1999. Molecular phylogeny of truffles (Pezizales: Terfeziaceae, Tuberaceae) derived from nuclear rDNA sequence analysis. Mol Phylogenet Evol (In press).
   Google Scholar
• Pfister DH. 1973. The psilopezioid fungi. IV. The genus Pachyella (Pezizales). Can J Bot 51: 2009–2023.
   Google Scholar
• Pfister DH. 1977. Type studies in the genus Peziza. I. Species described by Berkeley and Curtis from the United States North Pacific Exploring Expedition (1853–1856). Mycotaxon 6: 337–340.
   Google Scholar
• Pfister DH. 1978a. Type studies in the genus Peziza. II. Operculate discomycetes described by J. B. Ellis and co-authors. Mycotaxon 7: 97–100.
   Google Scholar
• Pfister DH. 1978b. Type studies in the genus Peziza. III. Operculate discomycetes collected by W. R. Gerard. Mycotaxon 7: 209–213.
   Google Scholar
• Pfister DH. 1978c. Type studies in the genus Peziza. IV. Species described by F. E. Clements. Mycotaxon 7: 214–217.
   Web of Science ®Google Scholar
• Pfister DH. 1979a. Type studies in the genus Peziza. V. Species described by Rehm. Mycotaxon 8: 187–192.
   Web of Science ®Google Scholar
• Pfister DH. 1979b. Type studies in the genus Peziza. VI. Species described by C. H. Peck. Mycotaxon 8: 333–338.
   Google Scholar
• Pfister DH. 1979c. Type studies in the genus Peziza. VII. Miscellaneous species described by M. J. Berkeley and M. A. Curtis. Mycotaxon 8: 339–346.
   Google Scholar
• Pfister DH. 1979d. Type studies in the genus Peziza. VIII-X. Species described by G. Massee, E. K. Cash, and F. J. Seaver. Mycotaxon 9: 501–504.
   Google Scholar
• Rifai MA. 1968. The Australasian Pezizales in the herbarium of the Royal Botanical Gardens Kew. Verh Kon Ned Akad Wet 57: 1–295.
   Google Scholar
• Sanderson MJ. 1995. Objections to bootstrapping phylogenies: a critique. Syst Biol 44: 299–320.
   Web of Science ®Google Scholar
• Schnare MN, Damberger SH, Gray MW, Gutell RR. 1996. Comprehensive comparison of structural characteristics in eukaryotic cytoplasmic large subunit (23 S-like) ribosomal RNA. J Mol Biol 256: 701–719.
   PubMed Web of Science ®Google Scholar
• Seaver FJ. 1928. The North American cup-fungi (Operculates). New York, New York: Publ by author. 377 p.
   Google Scholar
• Stalpers JA. 1974. Revision of the genus Oedocephalum (Fungi Imperfecti). Verh Kon Ned Akad Wet 77: 383–401.
   Google Scholar
• Strimmer K, von Haeseler A. 1996. Quartet puzzling: a quartet maximum-likelihood method for reconstructing tree topologies. Mol Biol Evol 13: 964–969.
   Web of Science ®Google Scholar
• Svrček M. 1976. A revision of species of the genus Peziza [Dill.] St-Amans, described by J. Velenovsky. Česká Mykol 30: 129–134.
   Google Scholar
• Svrček M. 1977. New combinations and new taxa in the operculate discomycetes. Česká Mykol 31: 69–71.
   Google Scholar
• Swofford D. 1998. PAUP: phylogenetic analysis using parsimony, version 4.0d64. Laboratory of Molecular Systematics, Smithsonian Institution, Washington, D.C.
   Google Scholar
• Trappe JM. 1979. The orders, families, and genera of hypogeous Ascomycotina (Truffles and their relatives). Mycotaxon 9: 297–340.
   Web of Science ®Google Scholar
• Trappe JM. 1989. Cazia flexiascus gen. et sp. nov., a hypogeous fungus in the Helvellaceae. Mem New York Bot Gard 49: 336–338.
   Google Scholar
• White TJ, Bruns T, Lee S, Taylor J. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ, eds. PCR Protocols: a guide to methods and applications. New York, New York: Academic Press. p 315–322.
   Google Scholar