Detection and characterization of ancient fungi entrapped in glacial ice

LITERATURE CITED

• Abyzov SS, Bobin NE, Kudriashov BB. 1979. Microbiological analysis of glacial series of central Antarctica. Biol Bull Acad Sci USSR 6: 828–836.
   Google Scholar
• Abyzov SS, Bobin NE, Kudriashov BB.. 1982a. Quantitative analysis of microorganisms during the microbiological investigation of Antarctic glaciers. Biol Bull Acad Sci USSR 9: 558–564.
   Google Scholar
• Abyzov SS, Bobin NE, Kudriashov BB.. 1982b. Quantitative assessment of microorganisms in microbiological studies of Antarctic glaciers. Biol Bull Acad Sci USSR 9: 897–905.
   Google Scholar
• Abyzov SS, Bobin NE, Kudriashov BB.. 1986. Central Antarctica glacier as an object of investigations of prolonged anabiosis of microorganisms in nature. Antarktika: Dokl Komiss 25: 202–208.
   Google Scholar
• Altschul SF, Madden TL, Schaffer AA, Zhang Z, Miller W, Lipman DJ. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucl Acids Res 25: 3389–3402.
   PubMed Web of Science ®Google Scholar
• Amann RI, Ludwig W, Schleifer K. 1995. Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol Rev 59: 143–169.
   PubMedGoogle Scholar
• Barnola JM, Raynaud D, Korotkevich YS, Lorius C. 1987. Vostok ice core provides 160 000-year record of atmospheric CO2. Nature 329: 408–414.
   Web of Science ®Google Scholar
• Bartholomew JW, Paik G. 1966. Isolation and identification of obligate thermophilic spore forming bacilli from ocean basin cores. J Bacteriol 92: 635–638.
   Web of Science ®Google Scholar
• Bartnicki-Garcia S. 1970. Cell wall composition and other biochemical markers in fungal phylogeny. In: Phytochemical phylogeny. Proceedings of the Phytochemical Society Symposium. Vol. 13. London: Academic Press. p 81–103.
   Google Scholar
• Bender M, Sowers T, Dickson ML, Orchardo J, Grootes P, Mayewski PA, Meese DA. 1994. Climate correlation between Greenland and Antarctica during the past 100 000 years. Nature 372: 663–666.
   Web of Science ®Google Scholar
• Berbee ML, Taylor JW. 1993. Dating the evolutionary radiation of the true fungi. Can J Bot 71: 1114–1127.
   Google Scholar
• Cano RJ, Borucki MK. 1995. Revival and identification of bacterial spores in 25-to 40-million-year-old Dominican amber. Science 268: 1060–1064.
   PubMed Web of Science ®Google Scholar
• Castello JD, Lakshman DK, Tavantzis SM, Rogers SO, Bachand GD, Jagels R, Carlisle J, Liu YJ. 1995. Detection of infectious tomato mosaic tobamovirus in fog and clouds. Phytopathology 85: 1409–1412.
   Web of Science ®Google Scholar
• Castello JD, Lakshman DK, Tavantzis SM, Rogers SO, Bachand GD, Jagels R, Carlisle J, Liu YJ., Rogers SO, Starmer WT, Catranis CM, Ma LJ, Bachand GD, Zhao Y, Smith JE. 1999. Detection of tomato mosaic tobamovirus RNA in ancient glacial ice. Polar Biol 22: 207–212.
   Web of Science ®Google Scholar
• Catranis CM, Starmer WT. 1991. Microorganisms entrapped in glacial ice. Antarc J US 26: 234–236.
   Google Scholar
• Cross T, Attwell RW. 1974. Recovery of viable Thermoactinomycete endospores from deep mud cores. In: Barker AN, Gould GW, Wold J, eds. Spore research. London: Academic Press. p 11–20.
   Google Scholar
• Dansgaard W, Clausen HB, Gundestrup N, Johnson SJ, Rygner C. 1985. Dating and climatic interpretation of two deep Greenland ice cores. In: Langway CCJ, Oeschger H, Dansgaard W, eds. Greenland ice core: geophysics, geochemistry, and the environment. Washington, DC: American Geophysical Union. p 71–76.
   Google Scholar
• Gest H, Mandelstam J. 1987. Longevity of microorganisms in natural environments. Microbiol Sci 4: 69–71.
   PubMedGoogle Scholar
• Horak E. 1960. The fungal vegetation in the perimeter (2290–2350 m) of the Red Moss Glacier in the eastern valleys of the Alps. Nova Hedwigia 2: 487–504.
   Google Scholar
• Jouzel J, Barkov NI, Barnola JM, Bender M, Chappellaz J, Genthon C, Kotlyakov VM, Lipenkov V, Lorius C, Petit JR, Raynaud D, Raisbeck G, Ritz C, Sowers T, Stienvenard M, Yiou F, Yiou P. 1993. Extending the Vostok ice-core record of palaeoclimate to the penultimate glacial period. Nature 364: 407–412.
   Web of Science ®Google Scholar
• Kudriashov BB, Abyzov SS, Bobin NE. 1978. Selecting drills for microbiological studies of deep glacier layers at Vostok Station. Sovetsk Antarkich Eksped Inform Bull 98: 58–62.
   Google Scholar
• Kudriashov BB, Abyzov SS, Bobin NE., Kazakov GA. 1977. Elaboration of technical means of selection of a sample of ice for microbiological analysis in Antarctica. Antarktika: Dokl Komiss 16: 154–160.
   Google Scholar
• Langway CCJ, Oeschger H, Dansgarrd W. 1985. The Greenland ice sheet program in perspective. In: Langway CCJ, Oeschger H, Dansgarrd W, eds. Greenland ice core: geophysics, geochemistry, and the environment. Washington, DC: American Geophysical Union. p 1–8.
   Google Scholar
• Lindahl T. 1993. Instability and decay of the primary structure of DNA. Nature 362: 709–715.
   PubMed Web of Science ®Google Scholar
• Lorius C, Jouzel J, Ritz C, Merlivat L, Barkov NI, Korotkevich YS, Kotlyakov VM. 1985. A 150 000-year climatic record from Antarctic ice. Nature 316: 591–596.
   Web of Science ®Google Scholar
• Lorius C, Jouzel J, Ritz C, Merlivat L, Barkov NI, Korotkevich YS, Kotlyakov VM., Merlivat L, Jouzel J, Pourchet M. 1979. A 30 000 year climatic record from Antarctic ice. Nature 280: 644–648.
   Web of Science ®Google Scholar
• Ma LJ, Catranis CM, Starmer WT, Rogers SO. 1999. Revival and characterization of fungi from ancient polar ice. Mycologist 13: 70–73.
   Google Scholar
• McKemy JM, Morgan-Jones GM. 1991. Studies in the genus Cladosporium sensu lato. V. Concerning the type species, Cladosporium herbarum. Mycotaxon 42: 307–317.
   Web of Science ®Google Scholar
• Pace NR. 1997. A molecular view of microbial diversity and the biosphere. Science 276: 734–739.
   PubMed Web of Science ®Google Scholar
• Rogers SO, Bendich AJ. 1994. Extraction of total cellular DNA from plants, algae and fungi. In: Gelvin SB, Schilperoort RA, eds. Plant molecular biology manual. 3rd ed. Dordrecht, Netherlands: Kluwer Academic Press. P D1: l–8.
   Google Scholar
• Rogers SO, Bendich AJ., Rehner SA, Bledsoe C, Mueller GJ, Ammirati JF. 1989. Extraction of DNA from Basidiomycetes for ribosomal DNA hybridizations. Can J Bot 67: 1235–1243.
   Google Scholar
• Seaward MRD, Cross T, Unsworth BA. 1976. Viable bacterial spores recovered from an archaeological excavation. Nature 261: 407–408.
   Web of Science ®Google Scholar
• Shi T, Reeves RH, Gilichinsky DA, Friedman EI. 1997. Characterization of viable bacteria from Siberia permafrost by 16S rDNA sequencing. Micro Ecol 33: 169–179.
   PubMed Web of Science ®Google Scholar
• Sneath PHA. 1962. Longevity of micro-organisms. Nature 195: 643–646.
   PubMed Web of Science ®Google Scholar
• Sun SH, Huppert M, Cameron RE. 1978. Identification of some fungi from soil and air of Antarctica. In: Parker B, ed. Antarctic research series 3. Washington DC: American Geophysical Union. p 1–26.
   Google Scholar
• Swofford D. 1999. PAUP: phylogenetic analysis using parsimony, Version 4.0b2a (PPC). Sunderland, Massachusetts: Sinauer and Associates.
   Google Scholar
• Tautz D, Renz M. 1983. An optimized freeze-squeeze method for the recovery of DNA fragments from agarose gels. Anal Biochem 132: 14–19.
   PubMed Web of Science ®Google Scholar
• Taylor KC, Mayewski PA, Alley RB, Brook EJ, Gow AJ, Grootes PM, Meese DA, Saltzman ES, Severinghaus JP, Twickler MS, White JWC, Whitlow S, Zielinski GA. 1997. The Holocene-younger dryas transition recorded at Summit, Greenland. Science 278: 825–827.
   Web of Science ®Google Scholar
• Thompson JD, Higgins DG, Gibson TJ. 1997. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice. Nucl Acids Res 22: 4673–4680.
   Web of Science ®Google Scholar
• Thuring RWJ, Sanders JPM, Borst R 1975. A freeze-squeeze method for recovering long DNA from agarose gels. Anal Biochem 66: 213–220.
   PubMed Web of Science ®Google Scholar
• Vargo GA, Fanning K, Bell L. 1986. Growth rates and the salinity response of an Antarctic microflora community. Polar Biol 5: 241–247.
   Web of Science ®Google Scholar
• Vilgalys R, Sun BL. 1994. Ancient and recent patterns of geographic speciation in the oyster mushroom Pleurotus revealed by phylogenetic analysis of ribosomal DNA sequences. Proc Natl Acad Sci USA 91: 4599–4603.
   PubMed Web of Science ®Google Scholar
• Wang CJK, Zabel RA, eds. 1990. Identification manual for fungi from utility poles in the eastern United States. Rockville, Maryland: American Type Culture Collection. 356 p.
   Google Scholar
• White TJ, Bruns T, Lee S, Taylor JW. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ, eds. PCR protocols: a guide to methods and applications. New York: Academic Press. p 315–322.
   Google Scholar