65
Views
22
CrossRef citations to date
0
Altmetric
Molecular Evolution and Systematics

Phylogenetic study of Hypoxylon and related genera based on ribosomal ITS sequences

, , , , , , , , , , & show all
Pages 964-977 | Accepted 27 Apr 2000, Published online: 04 Jun 2019

LITERATURE CITED

  • Arenal F, Platas G, Monte E, Peláez F. 2000. ITS sequencing supports that Epicoccum nigrum and Phoma epicoccina are the same biological species. Mycol Res 104: 301–303.
  • Bills GF. 1996. Isolation and analysis of endophytic fungal communities from woody plants. In: Redlin SC, Carris LM, eds. Endophytic fungi in grasses and woody plants. Systematics, ecology and evolution. St. Paul, Minnesota: APS Press. p 31–65.
  • Bills GF., Peláez F. 1996. Endophytic isolates of Creosphaeria sassafras. Mycotaxon 57: 471–478.
  • Boysen M, Boija M, del Moral C, Salazar O, Rubio V. 1996. Identification at strain level of Rhizoctonia solani AG4 isolates by direct sequence of asymmetric PCR products of the ITS regions. Curr Genet 29: 174–181.
  • Bremer K. 1994. Branch support and tree stability. Cladistics 10: 295–304.
  • Bruns TD, White TJ, Taylor JW. 1991. Fungal molecular systematics. Annu Rev Ecol System 22: 525–564.
  • Chen W, Hoy JW, Schneider RW. 1992. Species-specific polymorphisms in transcribed ribosomal DNA of five Pythium species. Exp Mycol 16: 22–34.
  • Collado J. 1998. Analisis de los comunidades de hongos endofitos de Quercus ilex L. en la region central de la peninsula Iberica [PhD Dissertation]. Alcalá de Henares, Spain: Universidad de Alcalá de Henares. 251 p.
  • Felsenstein J. 1985. Confidence intervals on phylogenies: an approach using the bootstrap. Evolution 39: 783–791.
  • Felsenstein J.. 1993. PHYLIP manual version 3.5. Seattle: University of Washington.
  • Gardes M, Bruns TD. 1993. ITS primers with enhanced specificity for basidiomycetes---application to the identification of mycorrhizae and rusts. Mol Ecol 2: 113–118.
  • Gardes M, Bruns TD., White TJ, Fortin JA, Bruns TD, Taylor JW. 1991. Identification of indigenous and introduced symbiotic fungi in ectomycorrhizae by amplification of nuclear and mitochondrial ribosomal DNA. Can J Bot 69: 180–190.
  • Gyllestein UB, Erlich HA. 1988. Generation of single-stranded DNA by the polymerase chain reaction and its application to direct sequencing of the HLA-DQA locus. Proc Nad Acad Sci USA 85: 7652–7656.
  • Ju YM, Rogers JD. 1996. A revision of the genus Hypoxylon. St. Paul, Minnesota: APS Press. 365 p.
  • Ju YM, Rogers JD., San Martín F, Granmo A. 1998. The genus Biscogniauxia. Mycotaxon 66: 1–98.
  • Kang JC, Kong RYC, Hyde KD. 1999. Studies on the Amphisphaeriales 1. Amphisphaeriaceae (sensu stricto) and its phylogenetic relationships inferred from 5.8S rDNA and ITS2 sequences. Fung Divers 1: 147–157.
  • Kuhls K Lieckfeldt E, Samuels GJ, Kovacs W, Meyer W, Petrini O, Gams W, Börner T, Kubicek CP. 1996. Molecular evidence that the asexual industrial fungus Trichoderma reesei is a clonal derivative of the ascomycete Hypocrea jecorina. Proc Natl Acad Sci USA 93: 7755–7760.
  • Laessøe T, Rogers JD, Whalley AJS. 1989. Camillea, Jongiella and light-spored species of Hypoxylon. Mycol Res 93: 121–155.
  • Larena I, Salazar O, González V, Julián MC, Rubio V. 1999. Design of a primer for ribosomal DNA internal transcribed spacer with enhanced specificity for ascomycetes. J Biotechnol 75: 187–194.
  • Lee SB, Taylor JW. 1992. Phylogeny of five fungus-like protoctistan Phytophthora species, inferred from the internal transcribed spacers of ribosomal DNA. Mol Biol Evol 9: 636–653.
  • Martin P. 1968. Studies in the Xylariaceae, IV. Hypoxylon sections Papillata and Annulata. J S Afr Bot 34: 303–330.
  • Miller JH. 1961. A monograph of the world species of Hypoxylon. Athens, Georgia: Univ. Georgia Press. 158 p.
  • O'Donnell K, Cigelnik E, Nirenberg HI. 1998. Molecular systematics and phylogeography of the Gibberella fujikuroi species complex. Mycologia 90: 465–493.
  • Petrini LE, Petrini O. 1985. Xylariaceous fungi as endophytes. Sydowia 38: 216–234.
  • Petrini LE, Petrini O., Rogers JD. 1986. A summary of the Hypoxylon serpens complex. Mycotaxon 26: 401–436.
  • Pouzar Z. 1985a. Reassessement of the Hypoxylon serpens---complex I. Ceská Micol 39: 15–25.
  • Pouzar Z.. 1985b. Reassessement of the Hypoxylon serpens---complex II. Ceská Micol 39: 129–134.
  • Pouzar Z.. 1986. A key and conspectus of Central European species of Biscogniauxia and Obolarina (Pyrenomycetes). Ceská Micol 40: 1–10.
  • Rappaz F. 1987. Taxonomie et nomenclature des Diatrypacées a asques octosporés. Mycol Helv 2: 285–648.
  • Rogers JD. 1979. The Xylariaceae: systematic, biological and evolutionary aspects. Mycologia 71: 1–42.
  • Rogers JD., Ju YM. 1998. The genus Kretzschmaria. Mycotaxon 68: 345–393.
  • Rogers JD., Ju YM., San Martín F. 1997. Jumillera and Whalleya, new genera segregated from Biscogniauxia. Mycotaxon 64: 39–50.
  • Salazar O, Schneider JHM, Julián MC, Keijer J, Rubio V. 1999. Phylogenetic subgrouping of Rhizoctonia solani AG 2 isolates based on ribosomal ITS sequences. Mycologia 91: 459–467.
  • Salisbury BA. 1999. Strongest evidence: maximum apparent phylogenetic signal as a new cladistic optimality criterion. Cladistics 15: 137–149.
  • Sambrook J, Fritsch EF, Maniatis T. 1989. Molecular cloning: a laboratory manual. 2nd ed. Cold Spring Harbor, New York: Cold Spring Harbor Press. 1592 p.
  • Swofford DL. 1998. PAUP*. Phylogenetic Analysis using Parsimony (* and other methods). Version 4. Sunderland, Masschusetts: Sinauer Associates.
  • Takamatsu S. 1998. PCR applications in fungal phylogeny. In: Bridge PD, Arora DK, Reddy CA, Elander RP, eds. Applications of PCR in mycology. Wallingford, UK: CAB International. p 125–152.
  • Thompson JD, Higgins DG, Gibson TJ. 1994. CLUSTALW: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucl Acids Res 22: 4673–4680.
  • White TJ, Bruns TD, Lee S, Taylor JW. 1990. Amplification and direct sequencing of fungal ribosomal RNA for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ, eds. PCR protocols: a guide to methods and applications. San Diego, California: Academic Press. p 315–322.

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.