Typing Cylindrocladium species by analysis of ribosomal DNA spacers polymorphism: Application to field isolates from the banana rhizosphere

LITERATURE CITED

• Anderson JB, Stasovski E. 1992. Molecular phylogeny of northern hemisphere species of Armillaria. Mycologia 84: 505–516.
   Web of Science ®Google Scholar
• Bruns TD, White TJ, Taylor JW. 1991. Fungal molecular systematics. Annu Rev Ecol Systemat 22: 525–564.
   Google Scholar
• Castaing V, Beveraggi A, Fouré E, Fogain R. 1996. Detection of a Cylindrocladium sp. in Cameroon. Studies on pathogenic activity and interactions with R similis. Infomusa 5: 4–7.
   Google Scholar
• Cooke DEL, Duncan JM. 1997. Phylogenetic analysis of Phytophthora species based on ITS1 and ITS2 sequences of the ribosomal RNA gene repeat. Mycol Res 101: 667–677.
   Web of Science ®Google Scholar
• Crous PW, Rang JC, Schoch CL, Mchau GRA. 1999. Phylogenetic relationships of Cylindrocladium pseudogracile and Cylindrocladium rumohrae with morphologically similar taxa, based on morphology and DNA sequences of internal transcribed spacers and beta-tubulin. Can J Bot 77: 1813–1820.
   Google Scholar
• Crous PW, Rang JC, Schoch CL, Mchau GRA., Korf A, Van Zyl WH. 1995. Nuclear DNA polymorphisms of Cylindrocladium species with 1-septate conidia and vesicles. Syst Appl Microbiol 18: 224–230.
   Web of Science ®Google Scholar
• Crous PW, Rang JC, Schoch CL, Mchau GRA., Korf A, Van Zyl WH., Mchau GRA, Van Zyl WH, Wingfield MJ. 1997a. New species of Calonectria and Cylindrocladium isolated from soil in the tropics. Mycologia 89: 653–660.
   Web of Science ®Google Scholar
• Crous PW, Rang JC, Schoch CL, Mchau GRA., Korf A, Van Zyl WH., Mchau GRA, Van Zyl WH, Wingfield MJ., Peerally A. 1996. Gliocladiopsis irregularis sp. nov. and notes on Cylindrocladium spathiphylli. Mycotaxon 65: 119–128.
   Google Scholar
• Crous PW, Rang JC, Schoch CL, Mchau GRA., Korf A, Van Zyl WH., Mchau GRA, Van Zyl WH, Wingfield MJ., Peerally A., Phillips AJL, Wingfield MJ. 1992. Effects of cultural conditions on vesicle and conidium morphology in species of Cylindrocladium and Cylindrocladiella. Mycologia 84: 497–504.
   Web of Science ®Google Scholar
• Crous PW, Rang JC, Schoch CL, Mchau GRA., Korf A, Van Zyl WH., Mchau GRA, Van Zyl WH, Wingfield MJ., Peerally A., Phillips AJL, Wingfield MJ., Theron L, Van Zyl WH. 1997b. Delineation of Cylindrocladium species with 1–3-septate conidia and clavate vesicles based on morphology and rDNA RFLPs. Mycol Res 101: 210–214.
   Web of Science ®Google Scholar
• Crous PW, Rang JC, Schoch CL, Mchau GRA., Korf A, Van Zyl WH., Mchau GRA, Van Zyl WH, Wingfield MJ., Peerally A., Phillips AJL, Wingfield MJ., Theron L, Van Zyl WH., Wingfield MJ. 1994. A monograph of Cylindrocladium including anamorphs of Calonectria. Mycotaxon 51: 341–435.
   Web of Science ®Google Scholar
• Decock C, Crous PW. 1998. Curvicladium gen. nov., a new hyphomycete genus from French Guiana. Mycologia 90: 276–281.
   Web of Science ®Google Scholar
• Duchesne LC, Anderson JB. 1990. Location and direction of transcription of the 5SrRNA in Armillaria. Mycol Res 94: 266–269.
   Web of Science ®Google Scholar
• El-Gholl NE, Alfenas AC, Junghans DT, Schubert TS, Miller JW, Leahy RM. 1997. Description of Calonectria rumohrae sp. nov. (anamorph = Cylindrocladium rumohrae sp. nov.). Mycotaxon 64: 467–484.
   Web of Science ®Google Scholar
• Erland S, Henrion B, Martin F, Glover LA, Alexander IJ. 1994. Identification of the ectomycorrhizal basidiomycete Tylospora fibrillosa Donk by RFLP analysis of the PCR-amplified ITS and IGS regions of ribosomal DNA New Phytol 126: 525–532.
   PubMed Web of Science ®Google Scholar
• Felsenstein J. 1995. PHYLIP (Phylogeny Inference Package) version 3.57c. Seattle: University of Washington, Department of Genetics, USA. Distributed by the author.
   Google Scholar
• Goodwin DC, Lee SB. 1993. Microwave miniprep of total genomic DNA from fungi, plants, protists and animals for PCR. Biotechniques 15: 438–444.
   PubMed Web of Science ®Google Scholar
• Hamelin RC, Bérubé P, Gignac M, Bourassa M. 1996. Identification of root rot fungi in nursery seedlings by nested multiplex PCR. Appl Environ Microbiol 62: 4026–4031.
   PubMed Web of Science ®Google Scholar
• Hillis DM, Dixon MT. 1991. Ribosomal DNA: molecular evolution and phylogenetic inference. Quart Rev Biol 66: 411–53.
   PubMed Web of Science ®Google Scholar
• Jeng RS, Dumas M, Liu FH, Wang CL, Hubbes M. 1997. DNA analysis of Cylindrocladium floridanum isolates from selected forest nurseries. Mycol Res 101: 285–291.
   Web of Science ®Google Scholar
• Kobenan K. 1991. Parasites et ravageurs des bananiers en Côte d'Ivoire. Fruits 46: 633–641.
   Google Scholar
• Lee SB, Taylor JW. 1992. Phylogeny of five fungus-like protoctistan Phytophthora species inferred from the internal transcribed spacer of ribosomal DNA Mol Biol Evol 9: 636–653.
   PubMed Web of Science ®Google Scholar
• Loridat P. 1989. Etude de la microflore fongique et des nématodes associés aux nécroses de l'appareil souterrain du bananier en Martinique. Mise en évidence du pouvoir pathogène du genre Cylindrocladium. Fruits 44: 587–597.
   Google Scholar
• Nazar RN, Hu X, Schmidt J, Culham D, Robb J. 1991. Potential use of PCR-amplified ribosomal intergenic sequences in the detection and differentiation of Verticillium wilt pathogens. Physiol Mol Pl Pathol 39: 1–11.
   Web of Science ®Google Scholar
• Overmeyer K, Lünnemann S, von Wallbrunn C, Meinhardt F. 1996. Genetic variability among isolates and sexual offspring of the plant pathogenic fungus Calonectria morganii on the basis of random amplification of polymorphic DNA (RAPD) and restriction fragment length polymorphism (RFLP). Curr Microbiol 33: 249–255.
   PubMed Web of Science ®Google Scholar
• Peerally A. 1991. The classification and phytopathology of Cylindrocladium species. Mycotaxon 40: 323–366.
   Web of Science ®Google Scholar
• Perrière G, Gouy M. 1996. WWW-Query: an on-line retrieval system for biological sequence banks. Biochimie 78: 364–369.
   PubMed Web of Science ®Google Scholar
• Poupard P, Simonet P, Cavelier N, Bardin R. 1993. Molecular characterization of pseudocercosporella herpotrichoides isolates by amplification of ribosomal DNA internal transcribed spacers. Pl Pathol 42: 873–881.
   Web of Science ®Google Scholar
• Risède JM. 1994. Eléments de caractérisation de Cylindrocladium sp. agent de nécroses racinaires du bananier en Martinique. Fruits 49: 167–178.
   Google Scholar
• Risède JM.. 1995. Spatial and temporal distribution in soils of Cylindrocladium sp. fungal pathogen of bananas. Phytopathology 85: 1563.
   Google Scholar
• Rossman AY. 1979. Calonectria and its type species, C. daldiniana, a later synonym of C. pyrochroa. Mycotaxon 8: 321–328.
   Web of Science ®Google Scholar
• Rossman AY.. 1983. The phragmosporous species of Nectria and related genera. Mycol Pap 150: 1–164.
   Google Scholar
• Saitou N, Nei M. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4: 406–425.
   PubMed Web of Science ®Google Scholar
• Schoch CL, Crous PW. 1999. First report of Cylindrocladium root and petiole rot to Spathiphyllum in South Africa. S African J Bot 65: 208–211.
   Web of Science ®Google Scholar
• Schoch CL, Crous PW., Wingfield BD, Wingfield MJ. 1999. The Cylindrocladium candelabrum species complex includes four distinct mating populations. Mycologia 91: 286–298.
   Web of Science ®Google Scholar
• Semer CR, Mitchell DJ, Mitchell ME, Martin FR, Alfenas AC. 1987. Isolation, identification and chemical control of Cylindrocladium musae sp. nov. associated with toppling disease of banana. Phytopathology 77: 1729.
   Web of Science ®Google Scholar
• Simon L, Lalonde M, Bruns TD. 1992. Specific amplification of 18S fungal ribosomal genes from vesicular-arbuscular endomycorrhizal fungi colonizing roots. Appl Environ Microbiol 58: 291–295.
   PubMed Web of Science ®Google Scholar
• Sokal RRR, Michener CD. 1958. A statistical method for evaluation of systematic relationships. Univ Kansas Sci Bull 38: 1409–1438.
   Google Scholar
• Thompson JD, Higgins DG, Gibson TJ. 1994. CLUSTALW: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucl Acids Res 22: 4673–4680.
   PubMed Web of Science ®Google Scholar
• Victor D, Crous PW, Janse BJH, Wingfield MJ. 1997. Genetic variation in Cylindrocladium floridanum and other morphologically similar Cylindrocladium species. Syst Appl Microbiol 20: 268–285.
   Web of Science ®Google Scholar
• Watanabe T. 1994. Cylindrocladium tenue comb. nov. and two other Cylindrocladium species isolated from diseased seedlings of Phellodendron amurense in Japan. Mycologia 86: 151–156.
   Web of Science ®Google Scholar
• White TJ, Bruns T, Lee S, Taylor J. 1990. Amplification and direct sequencing of fungal ribosomal genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ, eds. PCR protocols: a guide to methods and applications. Academic Press, San Diego, p 315–322.
   Google Scholar
• Yan ZH, Rogers SO, Wang CJK. 1995. Assessment of Phialophora species based on ribosomal DNA internal transcribed spacers and morphology. Mycologia 87: 72–83.
   Web of Science ®Google Scholar