Global diversity and phylogeny of Onnia (Hymenochaetaceae) species on gymnosperms

Literature cited

• Chen JJ, Cui BK. 2014. Phlebiporia bubalina gen. et. sp. nov. (Meruliaceae, Polyporales) from southwest China with a preliminary phylogeny based on rDNA sequences. Mycological Progress 13:563–573.
   Web of Science ®Google Scholar
• Chen JJ, Cui BK, Dai YC. 2016. Global diversity and molecular systematics of Wrightoporia s. l. (Russulales, Basidiomycota). Persoonia 37:21–36.
   PubMed Web of Science ®Google Scholar
• Chen JJ, Cui BK, Zhou LW, Korhonen K, Dai YC. 2015. Phylogeny, divergence time estimation, and biogeography of the genus Heterobasidion (Basidiomycota, Russulales). Fungal Diversity 71:185–200.
   Web of Science ®Google Scholar
• Dai YC. 2010. Hymenochaetaceae (Basidiomycota) in China. Fungal Diversity 45:131–343.
   Web of Science ®Google Scholar
• Dai YC. 2012. Polypore diversity in China with an annotated checklist of Chinese polypores. Mycoscience 53:49–80.
   Web of Science ®Google Scholar
• Dai YC, Cui BK, Yuan HS, Li BD. 2007. Pathogenic wood-decaying fungi in China. Forest Pathology 37:105–120.
   Web of Science ®Google Scholar
• Darriba D, Taboada GL, Doallo R, Posada D. 2012. jModelTest 2: more models, new heuristics and parallel computing. Nature Methods 9:772.
   PubMed Web of Science ®Google Scholar
• Farris JS, Källersjö M, Kluge AG, Bult C. 1994. Testing significance of incongruence. Cladistics 10:315–319.
   Web of Science ®Google Scholar
• Gilbertson RL, Ryvarden L. 1986. North American polypores. Oslo, Norway: FungiFlora. 433 pp.
   Google Scholar
• Guindon S, Gascuel O. 2003. A simple, fast and accurate algorithm to estimate large phylogenies by maximum likelihood. Systematic Biology 52:696–704.
   PubMed Web of Science ®Google Scholar
• Hunt RS, White T. 1998. First report of Inonotus tomentosus, the cause of tomentosus root disease, from the Yukon Territory. Plant Disease 82:264.
   Google Scholar
• Imazeki R. 1943. Genera of Polyporaceae of Nippon. Bulletin of the Tokyo Science Museum 6:1–111.
   Google Scholar
• Imazeki R. 1952. A contribution to the fungous flora of Dutch New Guinea. Bulletin of the Government Forestry Experimental Station, Meguro 57:87–128.
   Google Scholar
• Karsten PA. 1889. Kritisk öfversigt af Finlands Basidsvampar (Basidiomycetes; Gastero- & Hymenomycetes). Bidrag till Kännedom af Finlands Natur och Folk 48:1–470.
   Google Scholar
• Katoh K, Standley DM. 2013. MAFFT: multiple sequence alignment software version 7: improvements in performance and usability. Molecular Biology and Evolution 30:772–780.
   PubMed Web of Science ®Google Scholar
• Larsson KH, Parmasto E, Fischer M, Langer E, Nakasone K, Redhead S. 2006. Hymenochaetales: a molecular phylogeny for the hymenochaetoid clade. Mycologia 98:926–936.
   PubMed Web of Science ®Google Scholar
• Niemelä T. 2005. Polypores, lignicolous fungi. Norrlinia 13:1–320.
   Google Scholar
• Pattengale ND, Alipour M, Bininda-Emonds ORP, Moret BME, Stamatakis A. 2010. How many bootstrap replicates are necessary? Journal of Computational Biology 17:337–354.
   PubMed Web of Science ®Google Scholar
• Petersen JH. 1996. Farvekort. The Danish Mycological Society´s colour-chart. Greve, Danmark: Foreningen til Svampekundskabens Fremme. 6 pp.
   Google Scholar
• Ronquist F, Huelsenbeck JP. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572–1574.
   PubMed Web of Science ®Google Scholar
• Ryvarden L. 1976. Type studies in the Polyporaceae 7. Species described by J.M. Berkeley from 1836 to 1843. Kew Bulletin 31:81–103.
   Google Scholar
• Ryvarden L. 1990. Type studies in the Polyporaceae 22. Species described by C.G. Lloyd in Polyporus. Mycotaxon 38:83–102.
   Google Scholar
• Ryvarden L. 1992. Type studies in the Polyporaceae 23. Species described by C.G. Lloyd in Lenzites, Polystictus, Poria and Trametes. Mycotaxon 44:127–136.
   Web of Science ®Google Scholar
• Ryvarden L. 2005. The genus Inonotus. Synopsis Fungorum 21:1–149.
   Google Scholar
• Ryvarden L, Melo I. 2014. Poroid fungi of Europe. Synopsis Fungorum 31:1–455.
   Google Scholar
• Silvestro D, Michalak I. 2012. raxmlGUI: a graphical frontend for RAxML. Organisms Diversity and Evolution 12:335–337.
   Google Scholar
• Sinclair WA, Lyon HH, Johnson WT. 1987. Diseases of trees and shrubs. Ithaca, NY: Cornell University Press. 575 pp.
   Google Scholar
• Swofford DL. 2002. PAUP*: phylogenetic analysis using parsimony (*and other methods). Version 4.0b10. Sunderland, MA: Sinauer Associates.
   Google Scholar
• Stamatakis A. 2006. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22:2688–2690.
   PubMed Web of Science ®Google Scholar
• Vilgalys R, Hester M. 1990. Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. Journal of Bacteriology 172:4238–4246.
   PubMed Web of Science ®Google Scholar
• Wagner T, Fischer M. 2002. Proceedings towards a natural classification of the worldwide taxa Phellinus s.l. and Inonotus s.l., and phylogenetic relationships of allied genera. Mycologia 94:998–1016.
   PubMed Web of Science ®Google Scholar
• White TJ, Bruns TD, Lee S, Taylor J. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ, eds. PCR protocols, a guide to methods and applications. San Diego, CA: Academic Press. pp. 315–322.
   Google Scholar
• Zhou LW. 2015. Cylindrosporus flavidus gen. et comb. nov. (Hymenochaetales, Basidiomycota) segregated from Onnia. Phytotaxa 219:276–282.
   Web of Science ®Google Scholar
• Zhou LW, Vlasák J, Dai YC .2016. Taxonomy and phylogeny of Phellinidium (Hymenochaetales, Basidiomycota): a redefinition and the segregation of Coniferiporia gen. nov. for forest pathogens. Fungal Biology 120:988–1001.
   PubMed Web of Science ®Google Scholar