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Systematics

Phylogenetic systematics of Syncephalis (Zoopagales, Zoopagomycotina), a genus of ubiquitous mycoparasites

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Pages 333-349 | Received 11 Jan 2017, Accepted 13 Mar 2017, Published online: 10 May 2017

LITERATURE CITED

  • Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. 1990. Basic local alignment search tool. Journal of Molecular Biology 215:403–410.
  • Baas-Becking LGM. 1934. Geobiologie of inleiding tot de milieukunde. Diligentia Wetensch. Serie 18/19. The Hague, The Netherlands: van Stockum. 263 p.
  • Baker KL, Beneke ES, Hooper GR, Fields WG. 1977. Host range and axenic culture of the mycoparasite Syncephalis sphaerica (Mucorales). Mycologia 69:1008–1015.
  • Bawcutt RA. 1966. A study on an isolate of Syncephalis from Leicester [M. S. thesis]. Durham, UK: Durham University.
  • Benjamin RK. 1959. The merosporangiferous Mucorales. Aliso 4:321–433.
  • Benjamin RK. 1966. The Merosporangium. Mycologia 58:1–42.
  • Benjamin RK. 1985. A novel new species of Syncephalis (Zoopagales: Piptocephalidaceae) from California that forms hypogenous merosporangia. Aliso 11:11–15.
  • Benny GL, Ho HM, Lazarus KL, Smith ME. 2016a. Five new species of the obligate mycoparasite Syncephalis (Zoopagales, Zoopagomycotina) from soil. Mycologia 108(6):1114–1129
  • Benny GL, Smith ME, Kirk PM, Tretter ED, White MM. 2016b. Challenges and future perspectives in the systematics of Kickxellomycotina, Mortierellomycotina, Mucoromycotina, and Zoopagomycotina. In: D-W Li, ed. Biology of microfungi. Cham, Switzerland: Springer International Press. p 65–126.
  • Blaalid R, Kumar S, Nilsson RH, Abarenkov K, Kirk PM, Kauserud H. 2013. ITS1 versus ITS2 as DNA metabarcodes for fungi. Molecular Ecology Research 13:218–224.
  • Darriba D, Taboada GL, Doallo R, Posada D. 2012. jModelTest 2: more models, new heuristics and parallel computing. Nature Methods 9:772.
  • Deagle B, Eveson J, Jarman S. 2006. Quantification of damage in DNA recovered from highly degraded samples—a case study on DNA in faeces. Frontiers in Zoology 3:11.
  • Edgar RC. 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research 32:1792–1797.
  • Ellis JJ. 1966. On growing Syncephalis in pure culture. Mycologia 58:465–469.
  • Embree RW. 1965. A new species of Syncephalis (Mucorales). American Journal of Botany 52:737–741.
  • Fernández-Mendoza F, Domaschke S, García MA, Jordan P, Martín MP, Printzen C. 2011. Population structure of mycobionts and photobionts of the widespread lichen Cetraria aculeata. Molecular Ecology 20:1208–1232.
  • Gardes M, Bruns TD. 1993. Molecular tools for the identification of ectomycorrhizal fungi—taxon-specific oligonucleotide probes for suilloid fungi. Molecular Ecology 2:233–242.
  • Henk DA, Eagle CE, Brown K, Van Den Berg MA, Dyer PS, Peterson SW, Fisher MC. 2011. Speciation despite globally overlapping distributions in Penicillium chrysogenum: the population genetics of Alexander Fleming’s lucky fungus. Molecular Ecology 20:4288–301.
  • Ho HM. 2001. The Merosporangiferous fungi from Taiwan (I): two new records of Syncephalis. Taiwania 46:318–324.
  • Ho HM, Benny GL. 2008. A new species of Syncephalis from Taiwan. Botanical Studies 49:45–48.
  • Hoffman K, Pawlowska J, Walther G, Wrzosek M, De Hoog GS, Benny GL, Kirk PM, Voigt K. 2013. The family structure of the Mucorales: a synoptic revision based on comprehensive multigene-genealogies. Persoonia 30:57–76.
  • Hou TH. 2011. Taxonomic and phylogenetic student of Piptocephalis in Taiwan [M. S. thesis]. Taipei, Taiwan: National Taipei University of Education.
  • Hunter WE, Butler EE. 1975. Syncephalis californica, a mycoparasite inducing giant hyphal swellings in species of Mucorales. Mycologia 67:863–872.
  • Indoh H. 1962. Studies on Japanese Mucorales. I. On the genus Syncephalis. Science Reports of Tokyo Kyoiku Daigaku, Section B 11:1–26.
  • Jeffries P. 1985. Mycoparasitism within the Zygomycetes. Botanical Journal of the Linnean Society 91:135–150.
  • Kuhnert R, Oberkofler I, Peintner U. 2012. Fungal growth and biomass development is boosted by plants in snow-covered soil. Microbial Ecology 64:79–90.
  • Kuzuha S. 1973. Notes on Japanese Syncephalis. Transactions of the Mycological Society of Japan 14:237–245.
  • Lanfear R, Calcott B, Ho SYW, Guindon S. 2012. PartitionFinder: combined selection of partitioning schemes and substitution models for phylogenetic analyses. Molecular Biology and Evolution 29:1695–1701.
  • Maddison WP, Maddison DR. 2015. Mesquite: a modular system for evolutionary analysis. Version 3.04. Available from: http://mesquiteproject.org
  • Mehrotra BS, Prasad R. 1965. Species of Syncephalis from India I. Sydowia 19:112–116.
  • Mehrotra BS, Prasad R. 1969. An interesting new species of Syncephalis from India. Sydowia 23:92–94.
  • Miller MA, Pfeiffer W, Schwartz T. 2010. Creating the CIPRES Science Gateway for inference of large phylogenetic trees. In: Proceedings of the Gateway Computing Environments Workshop; 14 November 2010; New Orleans, Louisiana. Piscataway, N.J.: IEEE. p. 1–8.
  • Möller A. 1901. Phycomyceten und Ascomyceten. Botanische Mittheilungen aus den Tropen 9:1–319.
  • Naumov NA. 1939. Clés des Mucorinées (Mucorales). Encyclopédie Mycologique 9:1–137.
  • Prasad R, Mehrotra BS. 1979. Species of Syncephalis from India—Syncephalis rosetta sp. nov. Beih. Nova Hedwigia 63:33–39.
  • Rambaut A, Suchard MA, Xie D, Drummond AJ. 2014. Tracer version 1.6. Available from: http://beast.bio.ed.ac.uk/Tracer
  • Richardson MJ, Leadbeater G. 1972. Piptocephalis fimbriata sp. nov., and observations on the occurrence of Piptocephalis and Syncephalis. Transactions of the British Mycological Society 58:205–215.
  • Ronquist F, Teslenko M, Van der Mark P, Ayres DL, Darling A, Höhna S, Larget B, Liu L, Suchard MA, Huelsenbeck JP. 2012. MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Systematic Biology 6:539–542.
  • Schoch CL, Seifert KA, Huhndorf S, Robert V, Spouge JL, Levesque CA, Chen W, Fungal Barcoding Consortium. 2012. Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi. Proceedings of the National Academy of Sciences of the United States of America 109:6241–6246.
  • Stamatakis A. 2014. RAxML 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics 30:1312–1313.
  • Strauss T, Botha A, Greyling D, Mostert T, du Preez PJ, Kock JFL. 2000. Development and testing of selective media for mucoralean fungi. South African Journal of Science 96:597–602.
  • Talavera G, Castresana J. 2007. Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments. Systematic Biology 56:564–577.
  • Talbot JM, Bruns TD, Taylor J, Smith DP, Branco S, Glassman SI, Erlandson S, Vilgalys R, Liao S, Smith ME, Peay KG. 2014. Endemism and functional convergence across the North American soil mycobiome. Proceedings of the National Academy of Sciences of the United States of America 111:6341–6346.
  • Tanabe Y, Saikawa M, Watanabe MM, Sugiyama J. 2004. Molecular phylogeny of Zygomycota based on EF-1a and RPB1 sequences: limitations and utility of alternative markers to rDNA. Molecular Phylogenetics and Evolution 30:438–449.
  • Tedersoo L, May TW, Smith ME. 2010. Ectomycorrhizal lifestyle in fungi: global diversity, distribution, and evolution of phylogenetic lineages. Mycorrhiza 20:217–263.
  • Thaxter R. 1897. New or peculiar Zygomycetes. 2. Syncephalastrum and Syncephalis. Botanical Gazette 24:1–15.
  • Van Tieghem P, Le Monnier G. 1873. Recherches sur les Mucorinées. Annales des sciences naturelles: Botanique, Série V 17:261–399.
  • Untergrasser A, Cutcutache I, Koressaar T, Ye J, Faircloth BC, Remm M, Rozen SG 2012. Primer3—new capabilities and interfaces. Nucleic Acids Research 40(15): e115. doi:10.1093/nar/gks596
  • Vilgalys R, Hester M. 1990. Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. Journal of Bacteriology 172:4239–4246.
  • Vuillemin P. 1903. Le Syncephalis adunca sp. nov. et al série des Cornutae. Annales Mycologici 1:420–427.
  • Walser JC, Sperisen C, Soliva M, Scheidegger C. 2003. Fungus-specific microsatellite primers of lichens: application for the assessment of genetic variation on different spatial scales in Lobaria pulmonaria. Fungal Genetics and Biology 40:72–82.
  • Werle E, Schneider C, Renner M, Völker M, Fiehn W. 1994. Convenient single-step, one tube purification of PCR products for direct sequencing. Nucleic Acids Research. 22:4354–4355.
  • White MM, James TY, O’Donnel K, Cafaro MJ, Tanabe Y, Sugiyama J. 2006. Phylogeny of the Zygomycota based on nuclear ribosomal sequence data. Mycologia 98:872–884.
  • White TJ, Bruns T, Lee S, Taylor J. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ, eds. pcr protocols: a guide to methods and applications. San Diego, California: Academic Press. p. 315–322.
  • Zhang T, Victor TR, Rajkumar SS, Li X, Okoniewski JC, Hicks AC, Davis AD, Broussard K, LaDeau SL, Chaturvedi, S, Chaturvedi V. 2014. Mycobiome of the bat white nose syndrome affected caves and mines reveals diversity of fungi and local adaptation by the fungal pathogen Pseudogymnoascus (Geomyces) destructans. PLoS ONE 9:e108714.
  • Zycha H. 1935. Mucorine in Kryptogamen-Flora der Mark Bradenburg. 6a. Leipzig, Germany: Gebruder Borntraeger. 264 p.

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