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Systematics

A new 18S rRNA phylogeny of uncultured predacious fungi (Zoopagales)

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Pages 291-298 | Received 18 Apr 2018, Accepted 06 Nov 2018, Published online: 11 Mar 2019

LITERATURE CITED

  • Ahrendt SR, Quandt CA, Ciobanu D, Clum A, Salamov A, Andreopoulos B, Cheng J-F, Woyke T, Pelin A, Henrissat B, Benny GL, Smith ME, James TY, Grigoriev IV. 2018. Leveraging single-cell genomics to expand the Fungal Tree of Life. Nature Microbiology, doi:10.1038/s41564-018-0261-0
  • Barron GL. 1977. The nematode-destroying fungi. Topics in Mycobiology No. 1. Guelph, Ontario, Canada: Canadian Biological Publications. 140 p.
  • Barron GL. 1980. The biological role of Rhopalomyces magnus. Mycologia 72:427–430.
  • Barron GL. 2004. Fungal parasites and predators of rotifers, nematodes, and other invertebrates. In: Mueller GM, Bills GF, Foster MS, eds. Biodiversity of Fungi: inventory and monitoring methods. Amsterdam, The Netherlands: Elsevier Academic Press. p. 435–450.
  • Benny GL, Smith ME, Kirk PM, Tretter ED, White MM. 2016b. Challenges and future perspectives in the systematics of Kickxellomycotina, Mortierellamycotina, Mucoromycotina, and Zoopagomycotina. In: Li D-W, ed. Biology of microfungi. Cham, Switzerland: Springer International Publishing. p. 65–126.
  • Benny GL, Ho H-M, Lazarus KL, Smith ME. 2016a. Five new species of the obligate mycoparasite Syncephalis (Zoopagales, Zoopagomycotina) from soil. Mycologia 108:1114–1129.
  • Binga EK, Lasken RS, Neufeld JD. 2008. Something from (almost) nothing: the impact of multiple displacement amplification on microbial ecology. The ISME Journal 2:233–241.
  • Borneman J, Hartin RJ. 2000. PCR primers that amplify fungal rRNA genes from environmental samples. Applied and Environmental Microbiology 66:4356–4360.
  • Castresana J. 2000. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Molecular Biology and Evolution 17:540–552.
  • Corsaro D, Köhsler M, Wylezich C, Venditti D, Walochnik J, Michel R. 2018. New insights from molecular phylogenetics of amoebophagous fungi (Zoopagomycota, Zoopagales). Parasitology Research 117:157–167.
  • Dick MW. 1990. The systematic position of Zoophagus insidians. Mycological Research 94:347–354.
  • Dreschler C. 1935a. Some conidial phycomycetes destructive to terricolous amoebae. Mycologia 27:6–40.
  • Dreschler C. 1935b. Some non-catenulate conidial phycomycetes preying on terricolous amoebae. Mycologia 27:176–205.
  • Dreschler C. 1936. A new species of Stylopage preying on nematodes. Mycologia 28:241–246.
  • Dreschler C. 1962. A nematode-capturing phycomycete with distally adhesive branches and proximally imbedded fusiform conidia. Canadian Journal of Botany 49:1089–1095.
  • Dreshcler C. 1935c. A new species of conidial phycomyete preying on nematodes. Mycologia 27:206–215.
  • Duddington CL. 1955. A new species of Stylopage capturing nematodes. Mycologia 47:245–248.
  • Gawad C, Koh W, Quake SR. 2016. Single-cell genome sequencing: current state of the science. Nature Reviews Genetics 17:175–188.
  • Gonzalez JM, Portillo MC, Saiz-Jimenez C. 2005. Multiple displacement amplification as a pre-polymerase chain reaction (pre-PCR) to process difficult to amplify samples and low copy number sequences from natural environments. Environmental Microbiology 7:1024–1028.
  • Hosokawa M, Nishikawa Y, Kogawa M, Takeyama H. 2017. Massively parallel whole genome amplification for single-cell sequencing using droplet microfluidics. Scientific Reports 7:5199.
  • Huelsenbeck JP, Ronquist F. 2001. MRBAYES: Bayesian inference of phylogeny. Bioinformatics 17:754–755.
  • Katoh K, Misawa K, Kuma K, Miyata T. 2002. MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Research 30:3059–3066.
  • Katoh K, Rozewicki J, Yamada KD. 2017. MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization. Briefings in Bioinformatics bbx108.
  • Kirk PM, Cannon PF, Minter DW, Stalpers JA. 2010. Dictionary of the Fungi. 10th ed. Wallingford, UK: CABI. 771 p.
  • Lazarus KL, Benny GL, Ho H-M, Smith ME. 2017. Phylogenetic systematics of Syncephalis (Zoopagales, Zoopagomycotina), a genus of ubiquitous mycoparasites. Mycologia 109:333–349.
  • Matsubayashi M, Shimada Y, Li Y-Y, Harada H, Kubota K. 2017. Phylogenetic diversity and in situ detection of eukaryotes in anaerobic sludge digesters. PLoS ONE 12:e0172888.
  • Michel R, Steid P, Köhsler M, Walochnik J. 2015. Acaulopage tetraceros Dreschler 1935 (Zoopagales): cultivation, prey pattern, and molecular characterization. Journal of Endocytobiosis and Cell Research 26:76–82.
  • Michel R, Walochnik J, Steid P. 2014. Article for the “Free-living amoeba special issue”: isolation and characterisation of various amoebophagous fungi and evaluation of their prey spectrum. Experimental Parasitology 145:5131–5136.
  • Prowse GA. 1954. Sommerstorffia spinose and Zoophagus insidians predaceous on rotifers, and Rozellaopsis inflata, the endoparasite of Zoophagus. Transactions of the British Mycological Society 37:134–150.
  • Ronquist F, Huelsenbeck JP. 2003. MRBAYES 3: Bayesian phylogenetic inference under mixed models. Bioinformatics. 19:1572–1574.
  • Saikawa M, Morikawa C. 1985. Electron microscopy on a nematode-trapping fungus, Acaulopage pectospora. Canadian Journal of Botany 63:1386–1390.
  • Saikawa M, Yamaguchi K, Morikawa C. 1988. Capture of rotifers by Acaulopage pectospora, and further evidence of its similarity to Zoophagus insidians. Mycologia 80:880–884.
  • Spatafora JW, Chang Y, Benny GL, Lazarus K, Smith ME, Berbee ML, Bonito G, Corradi N, Grigoriev I, Gryganskyi A, James TY, O’Donnell K, Taylor TN, Uehling J, Vilgalys R, White MM, Stajich JE. 2016. A phylum-level phylogenetic classification of zygomycete fungi based on genome-scale data. Mycologia 108:1028–1046..
  • Stamatakis A. 2006. RAxML-VI-HPC: maximum likelihood-based phylogenetic analysis with thousands of taxa and mixed models. Bioinformatics 22:2688–2690.
  • Stamatakis A, Hoover P, Rougemount J. 2008. A rapid algorithm for the RAxML web servers. SystBiol 57:758–771.
  • Stiernagle T. 2006. Maintenance of C. elegans. In: Wormbook ed. The C. elegans Research Community, doi:10.1895/wormbook.1.101.1; http://www.wormbook.org
  • Tanabe Y, O’Donnell K, Saikawa M, Sugiyama J. 2000. Molecular phylogeny of parasitic Zygomycota (Dimargaritales, Zoopagales) based on nuclear small subunit ribosomal DNA sequences. Molecular Phylogenetics and Evolution 16:253–262.
  • White TJ, Bruns T, Lee S, Taylor JW. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ, eds. PCR protocols: a guide to the methods and applications. New York: Academic Press. p. 315–322.

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