Systematic revision of the Tubifera casparyi–T. dictyoderma complex: Resurrection of the genus Siphoptychium and introduction of the new genus Thecotubifera

LITERATURE CITED

• Baldauf SL, Doolittle WF. 1997. Origin and evolution of the slime molds (Mycetozoa). Proc Natl Acad Sci USA 94(22): 12007–12012.
   Web of Science ®Google Scholar
• Borg Dahl M, Brejnrod AD, Unterseher M, Hoppe T, Feng Y, Novozhilov YK, Sørensen SJ, Schnittler M. 2017. Genetic barcoding of dark-spored myxomycetes (Amoebozoa)—identification evaluation and application of a sequence similarity threshold for species differentiation in NGS studies. Molecular Ecology Research 18:306–318.
   Web of Science ®Google Scholar
• Cavalier-Smith T. 2013. Early evolution of eukaryote feeding modes, cell structural diversity, and classification of the protozoan phyla Loukozoa, Sulcozoa, and Choanozoa. European Journal of Protistology 49:115–178.
   PubMed Web of Science ®Google Scholar
• Dagamac NHA, Rojas C, Novozhilov YK, Moreno GH, Schlueter R, Schnittler M. 2017. Speciation in progress? A phylogeographic study among populations of Hemitrichia serpula (Myxomycetes). PLoS ONE 12:e0174825.
   PubMed Web of Science ®Google Scholar
• Emoto Y. 1977. The myxomycetes of Japan. Tokyo, Japan: Sangyo Tosho. 235 p.
   Google Scholar
• Fiore-Donno AM, Clissmann F, Meyer M, Schnittler M, Cavalier-Smith T. 2013. Two-gene phylogeny of bright-spored myxomycetes (slime moulds, superorder Lucisporidia). PLoS One 8:e62586.
   PubMed Web of Science ®Google Scholar
• Fiore-Donno AM, Meyer M, Baldauf SL, Pawlowski J. 2008. Evolution of dark–spored Myxomycetes (slime–molds): molecules versus morphology. Mol Phylogenet Evol 46:878–889.
   Web of Science ®Google Scholar
• Hoppe T. 2009. Untersuchungen zur Entwicklungsphysiologie und molekularen Phylogenetik ausgewählter Vertreter der Myxomyceten und zur Photosynthese fähiger Eugleniden (Organismenreich Protoctista). Kassel: Kassel University Press. 254 p.
   Google Scholar
• Kalyaanamoorthy S, Minh BQ, Wong TKF, von Haeseler A, Jermiin LS. 2017. ModelFinder: fast model selection for accurate phylogenetic estimates. Nature Methods 14:587–589.
   PubMed Web of Science ®Google Scholar
• Katoh K, Kuma K, Toh H, Miyata T. 2005. MAFFT version 5: improvement in accuracy of multiple sequence alignment. Nucleic Acids Research 33:511–518.
   PubMed Web of Science ®Google Scholar
• Katoh K, Standley DM. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 30 (4):772–780. doi:10.1093/molbev/mst010.
   Google Scholar
• Leontyev DV. 2016. The evolution of the sporophore in Reticulariaceae (Myxogastrea). Ukrainial Botanical Journal 72(5):178–184.
   Google Scholar
• Leontyev DV, Schnittler M. 2017. The phylogeny of myxomycetes. In: Stephenson SL, Rojas C, eds. Myxomycetes—biology, systematics, biogeography and ecology. London, UK: Academic Press. p. 83–105.
   Google Scholar
• Leontyev DV, Fefelov KA. 2012. Nomenclatural status and notes on the morphology of Tubifera applanata sp. nov. Mycotaxon 120:247–251.
   Web of Science ®Google Scholar
• Leontyev DV, Schnittler M, Moreno G, Stephenson SL, Mitchell DW, Rojas C. 2014a. The genus Alwisia (Myxomycetes) revalidated, with two species new to science. Mycologia 106:936–948.
   Web of Science ®Google Scholar
• Leontyev DV, Schnittler M, Stephenson SL. 2014b. Pseudocapillitium or true capillitium? A study of capillitial structures in Alwisia bombarda (Myxomycetes). Nova Hedwigia 99:441–451.
   Web of Science ®Google Scholar
• Leontyev DV, Schnittler M, Stephenson SL. 2015. A critical revision of the Tubifera ferruginosa complex. Mycologia 107:959–985.
   Web of Science ®Google Scholar
• Leontyev DV, Schnittler M, Stephenson SL, Novozhilov YK, Shchepin ON. 2019. Towards a phylogenetic classification of the Myxomycetes. Phytotaxa 399:209–238.
   Web of Science ®Google Scholar
• Leontyev DV, Stephenson SL, Schnittler M. 2014c. A new species of Alwisia (Myxomycetes) from New South Wales and Tasmania. Mycologia 106:1212–1219.
   Web of Science ®Google Scholar
• Lister A. 1925. A monograph of the Mycetozoa. Ed 3 (revised by G Lister). London: British Museum. 296 p.
   Google Scholar
• Macbride TH. 1899. The North American slime-moulds; being a list of all species of myxomycetes hitherto described from North America, including Central America. New York: McMillan. 269 p.
   Google Scholar
• Macbride TH. 1922. The North-American slime molds. New York: McMillan Co. 299 p.
   Google Scholar
• Martin GW, Alexopoulos CJ. 1969. The Myxomycetes. Iowa City, Iowa: Iowa University Press. 560 p.
   Google Scholar
• Munsell AH. 1912. A pigment color system and notation. American Journal of Psychology 23:236–244.
   Google Scholar
• Nannenga-Bremekamp NE. 1985. Notes on Myxomycetes. XXII. Three new species, two new families and four new combinations. Proceedings van de Koninklijke Nederlandse Akademie van Wetenschappen, Section C 88:121–128.
   Google Scholar
• Neubert H, Nowotny W, Baumann K. 1993. Die Myxomyceten Deutschlands und des angrenzenden Alpenraumes unter besonderer Berücksichtigung Österreichs. Bd. 1. Gomaringen, Austria: Baumann Verlag. 340 p.
   Google Scholar
• Poulain M, Meyer M, Bozonnet J. 2011. Les Myxomycètes. Vol. 1. Dauphiné-Savoie, France: Fédération mycologique et botanique. 568 p.
   Google Scholar
• Rostafiński J. 1876. Dodatek do Monografii śluzowców (Mycetozoa). Pamiętnik Towarzystwa Nauk Ścisłych w Paryżu 8:1–46.
   Google Scholar
• Schnittler M, Novozhilov YK, Romeralo M, Brown M. 2012. Myxomycetes and Myxomycete-like organisms. Englers Syllabus of Plant Families. Vol 4. Stuttgart: Schweizerbart. p. 40–88.
   Google Scholar
• Schnittler M, Shchepin ON, Dagamac NHA, Borg Dahl M., Novozhilov YK. 2017. Barcoding myxomycetes with molecular markers: challenges and opportunities. Nova Hedwigia 104:323–341.
   Web of Science ®Google Scholar
• Stephenson SL, Schnittler M. 2017. Myxomycetes. In: Archibald JM, Simpson AGB, Slamovits CH, Margulis L, Melkonian M, Chapman DJ, Corliss JO, eds. Handbook of the protists. 2nd ed. New York: Springer. p. 1405–1432.
   Google Scholar
• Talavera G, Castresana J. 2007. Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments. Systematic Biology 56:564–577.
   PubMed Web of Science ®Google Scholar
• Trifinopoulos J, Nguyen LT, von Haeseler A, Minh BQ. 2016. W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis. Nucleic Acids Research 44(W1):W232–W235.
   PubMed Web of Science ®Google Scholar
• Walker LM, Leontyev DV, Stephenson SL. 2015. Perichaena longipes, a new myxomycete from the Neotropics. Mycologia 107:1012–1022.
   PubMed Web of Science ®Google Scholar