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Plant Pathogen Systematics

Reinstatement and phylogenetic allocation of the palm rust genus Cerradoa in the Pucciniaceae, and establishment of Pseudocerradoa, gen. nov.

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Pages 868-886 | Received 21 Feb 2021, Accepted 29 May 2022, Published online: 01 Aug 2022

LITERATURE CITED

  • Aime MC. 2006. Toward resolving family-level relationships in rust fungi (Uredinales). Mycoscience. 47:112–122.
  • Aime MC, Bell C, Wilson A. 2018. Deconstructing the evolutionary complexity between rust fungi (Pucciniales) and their plant hosts. Stud Mycol. 89:143–152.
  • Aime MC, McTaggart AR. 2021. A higher-rank classification for rust fungi, with notes on genera. Fungal Syst Evol. 7:21–47.
  • Altschul SF, Gish W, Miller M, Myers EW, Lipman DJ. 1990. Basic local and post-analysis of large phylogenies. J Mol Biol. 215(3):403–410.
  • Arthur JC. 1924. New species of Uredinales, XV. Bull Torrey Botl Club. 51(2):51–59.
  • Baiswar P, Ngachan SV, Chandra S. 2014. Identification of Nyssopsora thwaitesii on Schefflera in northeast India. Australas Plant Dis Notes. 9:124.
  • Barnes CW, Ordonez ME. 2017 Dec 7. Data from: Edythea quitensis isolate QCAM6453 large subunit ribosomal RNA. NCBI GenBank. [accessed 2021 Mar 15]. https://www.ncbi.nlm.nih.gov/nuccore/MG596499
  • Baxter JW. 1957. The Genus Cumminsiella. Mycologia. 49:864–873.
  • Beenken L, Zoller S, Berndt R. 2012. Rust fungi on Annonaceae II: the genus Dasyspora Berk & M.A. Curtis Mycologia. 104:659–681.
  • Beenken L. 2014. Pucciniales on Annona (Annonaceae) with special focus on the genusPhakopsora. Mycol Prog. 13:791–809.
  • Beenken L, Wood AR. 2015. Puccorchidium and Sphenorchidium, two new genera of Pucciniales on Annonaceae related to Puccinia psidii and the genus Dasyspora. Mycol Prog. 14:49.
  • Borchsenius F 2009. FastGap 1.2. Denmark: Department of Biosciences, Aarhus University. http://www.aubot.dk/FastGap_home.htm
  • Carvalho Jr. AA, Figueiredo MB, Furtado EL, Hennen JF. 2007. Uredinales sobre Blechnaceae, Thelypteridaceae, Schizaeaceae, Myrtaceae, Oxalidaceae, Rhamnaceae, Rubiaceae, Sapindaceae, Smilacaceae e Vitaceae da Reserva Florestal “Armando de Salles Oliveira. São Paulo, SP, Brasil Hoehnea. 34:481–492.
  • Chatasiri S, Ono Y. 2008. Phylogeny and taxonomy of the Asian grapevine leaf rust fungus, Phakopsora euvitis, and its allies (Uredinales). Mycoscience. 49:66–74.
  • Cook RP, Dube AJ. 1989. Host-pathogen index of plant diseases in South Australia. South Aust, Department Agric. 142.
  • Cummins GB, Hiratsuka Y. 1983. Illustrated genera of rust fungi. 2nd ed. Minnesota: APS Press, American Phytopathological Society, St. Paul. p. 152.
  • Cummins GB, Hiratsuka Y. 2003. Illustrated genera of rust fungi. 3rd ed. Minnesota: APS Press, American Phytopathological Society, St. Paul. p. 223.
  • Demers JE, Romberg MK, Castlebury LA. 2015. Microcyclic rusts of hollyhock (Alcea rosea). IMA FUNGUS. 6:477–482.
  • Dianese JC, Medeiros RB, Santos LTP. 1992. Cerradoa palmaea Hennen & Ono found in two new hosts, Syagrus comosa (Mart.) Mart. and S. flexuosa Becc. Fitopatologia Bras. 17(Supplement):198.
  • Dietel P. 1928. Uredinales. In: Engler A, Prantl K, editors. Die Natürlichen Pflanzenfamilien. 2nd ed. Leipzig (Germany. 6). p. 25–98.
  • Dixon LJ, Castlebury LA, Aime MC, Glynn NC, Comstock JC. 2010. Phylogenetic relationships of sugarcane rust fungi. Mycol Prog. 9:459–468.
  • Doungsa-ard C, McTaggart AR, Geering ADW, Dalisay TU, Ray J, Shivas RG. 2014. Uromycladium falcatarium sp. nov., the cause of gall rust on Paraserianthes falcataria in South-East Asia. Australas Plant Pathol. 44:25–30.
  • Ebinghaus M, Maier W, Wingfield MJ, Begerow D. 2018. New host associations and a novel species for the gall-inducing acacia rust genus Ravenelia in South Africa. MycoKeys. 43:1–21.
  • Ebinghaus M, Begerow D. 2018. Ravenelia piepenbringiae and Ravenelia hernandezii, two new rust species on Senegalia (Fabaceae, Mimosoideae) from Panama and Costa Rica. MycoKeys. 41:51–63.
  • Ebinghaus M, Wingfield MJ, Begerow D, Maier W. 2020. The genus Ravenelia (Pucciniales) in South Africa. Mycol Prog. 19:259–290.
  • Elias SG, Souza ESC, Ebinghaus M, Begerow D, Dianese JC. 2018. Morphological review and phylogeny of Cerradoa palmaea, the rust fungus of Arecaceae from the Brazilian Cerrado. IMC11 Abstr Book San Juan Puerto Rico: 11th Int Mycol Congr. 281.
  • Gäumann E. 1959. Die Rostpilze Mitteleuropas. Bern: Buechler. p. 1407.
  • Guindon S, Dufayard JF, Lefort V, Anisimova M, Hordijk W. 2010. New algorithms and methods to estimate maximum likelihood phylogenies: assessing the performance of phyml 3.0. Syst Biol. 59: 3 307–321.
  • Hennen JF, Ono Y. 1978. Cerradoa palmaea: the first rust fungus on Palmae. Mycologia. 70:569–576.
  • Hennen JF, McCain JW. 1993. New species and records of Uredinales from the Neotropics. Mycologia. 85:970–986.
  • Hennen JF, Figueiredo MB, Carvalho Jr AA, Hennen PG. 2005. Catalogue of the species of plant rust fungi (Uredinales) of Brazil. [ accessed 2021 Jan 18]. http://jbrj.gov.br/sites/all/themes/corporateclean/content/publicacoes/catalogue.pdf.
  • Hernández JR, Aime MC, Henkel TW. 2005. The rust fungi (Uredinales) of Guyana. Sydowia. 57:189–222.
  • Hiratsuka N. 1942. Notes on Uredinales collected in South China. J Jpn Bot. 18:563–572.
  • Hoang DT, Chernomor O, von Haeseler A, Minh BQ, Vinh LS. 2018. UFBoot2: improving the ultrafast bootstrap approximation. Mol Biol Evol. 35:518–522.
  • Jackson HS. 1926. The rusts of South America based on the Holway Collections—I. Mycologia. 18:139–162.
  • Jackson HS. 1931. The rusts of South America based on the Holway Collections—III. Mycologia. 23:96–116.
  • Kalyaanamoorthy S, Minh BQ, Wong TKF, von Haeseler A, Jermiin LS. 2017. ModelFinder: fast model selection for accurate phylogenetic estimates. Nat Methods. 14:587–589.
  • Katoh K, Misawa K, Kuma K, Miyata T. 2002. MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res. 30:3059–3066.
  • Katoh K, Kuma K, Toh H, Miyata T. 2005. MAFFT version 5: improvement in accuracy of multiple sequence alignment. Nucleic Acids Res. 33:11–51.
  • Katoh K, Standley DM. 2014. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 30:772–780.
  • Kern D, Thurston HW. 1943. Additions to the Uredinales of Venezuela—II. Mycologia. 35:434–445.
  • Kumar S, Stecher G, Tamura K. 2016. MEGA7: molecular Evolutionary Genetics Analysis version 7.0 for bigger datasets. Mol Biol Evol. 33:1870–1874.
  • Landan G, Graur D. 2008. Local reliability measures from sets of co-optimal multiple sequence alignments. Biocomputing. 13:15–24.
  • Larget B, Simon DL. 1999. Marcov Chain Monte Carlo algorithms for the Bayesian analysis of phylogenetic trees. Mol Biol Evol. 16:750–759.
  • Liu Y, Cao B, Tian C, Ono Y, Lin W, Liang Y. 2021. Taxonomy and phylogeny of rust fungi on Hamamelidaceae. Front Microbiol. 12:648890.
  • Lutz M, Bauer R, Begerow D, Oberwinkler F. 2004. Tuberculina Thanatophytum/Rhizoctonia crocorum-Helicobasidium: a unique mycoparasitic-phytoparasitic life strategy. Mycol Res. 108:227–238.
  • Maier W, Begerow D, Weiß M, Oberwinkler F. 2003. Phylogeny of the rust fungi: an approach using nuclear large subunit ribosomal DNA sequences. Can J Bot. 81:12–23.
  • Maier W, McTaggart AR, Roux J, Wingfield MJ. 2015. Phakopsora myrtacearum sp. nov., a newly described rust (Pucciniales) on eucalypts in eastern and Southern Africa. Plant Pathol. 65:189–195.
  • Marin-Felix Y, Groenewald JZ, Cai L, Chen Q, Marincowitz S, Barnes I, Bensch K, Braun U, Camporesi E, Damm U, et al. 2017. Genera of phytopathogenic fungi: GOPHY 1. Stud Mycol. 86:99–216.
  • Martins-Junior AS, Sakuragui CM, Hennen JF, Carvalho-Junior AA. 2019. Neopuccinia (Pucciniales): a new Puccinia-like genus from the Brazilian Cerrado. Phytotaxa. 406:169–179.
  • McCain JW, Hennen JF, Ono Y. 1990. New host species and state distribution records for North American rust fungi (Uredinales). Mycotaxon. 39:281–300.
  • McTaggart AR, Doungsa-Ard C, Geering AD, Aime MC, Shivas RG. 2015. A co-evolutionary relationship exists between Endoraecium (Pucciniales) and its Acacia hosts in Australia. Persoonia. 35:50–62.
  • McTaggart AR, Geering ADW, Shivas RG. 2013. Thekopsora minima causes blueberry rust in south-eastern Queensland and northern New South Wales. Aust Plant Dis Notes. 8(1):81–83.
  • McTaggart AR, Geering ADW, Shivas RG. 2014a. The rusts on Goodeniaceae and Stylidiaceae. Mycol Prog. 13:989.
  • McTaggart AR, Geering ADW, Shivas RG. 2014b. Uredinopsis pteridis and Desmella aneimiae, the first rust fungi (Pucciniales) reported on ferns (Pteridophyta) in Australia. Aust Plant Dis Notes. 9:149.
  • McTaggart AR, Shivas RG, Doungsa-Ard C, Weese TL, Beasley DR, Hall BH, Metcalf DA, Geering ADW. 2016a. Identification of rust fungi (Pucciniales) on species of Allium in Australia. Australas Plant Pathol. 45:581–592.
  • McTaggart AR, Shivas RG, van der Nest MA, Roux J, Wingfield BD, Wingfield MJ. 2016b. Host jumps shaped the diversity of extant rust fungi (Pucciniales). New Phytol. 209:1149–1158.
  • Minh BQ, Schmidt HA, Chernomor O, Schrempf D, Woodhams MD, von Haeseler A, Lanfear R. 2020a. IQ-TREE 2: new Models and Efficient Methods for Phylogenetic Inference in the Genomic Era. Mol Biol Evol. 37(5):1530–1534.
  • Minh BQ, Hahn MW, Lanfear R, Rosenberg M. 2020b. New methods to calculate concordance factors for phylogenomic datasets. Mol Biol Evol. 37:2727–2733.
  • Mohala SR, Aime MC. 2018. First report of gladiolus rust caused by Uromyces transversalis in Merida, Venezuela. Plant Dis. 102:444–445.
  • Moncalvo JM, Wang HH, Hseu RS. 1995. Phylogenetic relationships in Ganoderma inferred from the internal transcribed spacers and 25S ribosomal DNA sequences. Mycologia. 87:223–238.
  • Okane I, Ono I, Ohmachia K, Aime MC, Yamaoka Y 2021. Phylogenetic relationships among fern rust fungi and Desmella lygodii comb. nov. Mycoscience 62 MYC552.[ accessed 2021 Oct 10]. https://www.jstage.jst.go.jp/article/mycosci/advpub/0/advpub_MYC552/_pdf.
  • Ono Y, Kakishima M, Kudo A, Sato S. 1986. Blastospora smilacis, a teleomorph of Coeoma makinoi, and its sorus development. Mycologia. 78:253–262.
  • Ono Y, Kakishima M, Lohsomboon P, Sato S, Manoch L, Visarathanonth N. 1988. Two rust fungi with pseudosuprastomatal sori collected in Thailand. Trans Br Mycol Soc. 91:467–472.
  • Ono Y, Ohmachi K, Unartngam J, Okane I, Ayawong C, Janruang P. 2020. Milesina thailandica, a second rust fungus on an early diverged leptosporangiate fern genus, Lygodium, found in Thailand. Mycol Prog. 19:147–154.
  • Ordoñez ME, Barnes CW. 2017. Macrocyclic Edythea quitensis rust on Berberis hallii in Ecuador. Mycotaxon. 132:197–204.
  • Padamsee M, McKenzie EHC. 2014. A new species of rust fungus on the New Zealand endemic plant, Myosotidium, from the isolated Chatham Islands. Phytotaxa. 174:223–230.
  • Pegg GS, Giblin FR, McTaggart AR, Guymer GP, Taylor H, Ireland KB, Shivas RG, and Perry S. 2014. Puccinia psidii in Queensland, Australia: disease symptoms, distribution and impact. Plant Pathol. 63:1005–1021.
  • Penn O, Privman E, Ashkenazy H, Landan G, Graur D, Pupko T. 2010. GUIDANCE: a web server for assessing alignment confidence scores. Nucleic Acids Res. 38:23–28.
  • Pota S, Chatasiri S, Unartngam J, Yamaoka Y, Hosaka K, Ono Y. 2015. Taxonomic identity of a Phakopsora fungus causing the grapevine leaf rust disease in Southeast Asia and Australasia. Mycoscience. 56:198–204.
  • Rodas CA, Roux J, Maier W, Granados GM, Bolanos MD, McTaggart AR, Wingfield MJ, Belbahri L. 2015. First report of Puccinia psidii on Corymbia citriodora and Eucalyptus in Colombia. For Pathol. 45:534–536.
  • Ronquist F, Teslenko M, van der Mark P, Ayres DL, Darling A, Höhna S, Larget B, Liu L, Suchard MA, Huelsenbeck JP. 2012. MrBayes 3.2: efficient Bayesian phylogenetic inference andmodel choice across a large model space. Syst Biol. 61:539–542.
  • Savile DBO. 1976. Evolution of the rust fungi (Uredinales) as reflected by their ecological problems. Evol Biol. 9:137–207.
  • Scholler M, Aime MC. 2006. On some rust fungi (Uredinales) collected in an Acacia koa-metrosideros polymorpha woodland, Mauna Loa Road, Big Island, Hawaii. Mycoscience. 47:159–165.
  • Shaw DE. 1991. Rust of Monstera deliciosa. Mycol Res. 95:665–678.
  • Shaw DE. 1995. Reaction of aroids to Puccinia paullula f.sp. Monsterae Australas Plant Pathol. 24:15–21.
  • Shen YM, Chung WH, Huang TC, Rodeva R, Hung TH. 2018. Unveiling Gymnosporangium corniforme, G. unicorne, and G.niitakayamense sp. nov. In Taiwan. Mycoscience. 59:218–228.
  • Shivas RG, Beasley DR, McTaggart AR. 2014. Online identification guides for Australian smut fungi (Ustilaginomycotina) and rust fungi (Pucciniales). IMA Fungus. 5:195–202.
  • Silvestro D, Michalak I. 2012. raxmlGUI: a graphical front-end for RAxML. Org Div Evol. 12:335–337.
  • Simmons MP, Ochotena H. 2000. Gaps as characters in sequence-based phylogenetic analyses. Syst Biol. 49:369–381.
  • Souza ESC, Chaves ZM, Soares WRO, Pinho DB, Dianese JC. 2015. Uromyces hawksworthii nom. nov. For Aecidium goyazense, on Phthirusa stelis (Loranthaceae) from the Brazilian Cerrado. IMA Fungus. 6:155–162.
  • Souza ESC, Aime MC, Elias SG, Pinho DB, Miller RNG, Dianese JC. 2018. Crossopsorella, a new tropical genus of rust fungi. Phytotaxa. 375:189–202.
  • Stamatakis A. 2014. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics. 30:1312–1313.
  • Sydow H, Sydow P. 1913. Descriptions of some new Phillipine fungi. Phillipine J Sci. 8:195–196.
  • Sydow H, Petrak F. 1928. Micromycetes philippinenses. Ann Mycologici. 26:414–446.
  • Sydow H, Petrak F. 1931. Micromycetes philippinenses. Series secunda. Ann Mycologici. 29:145–297.
  • Ullah S, Abbasi M, Khalid AN, Ishaq A, Fiaz M, Aime MC. 2019. Allodis prostii comb. nov., causal agent of tulip rust. Nova Hedwigia. 109:225–232.
  • van der Merwe Mm, Walker J, Ericsson L, Burdon JJ. 2007. Evolutionary relationships among species of Puccinia and Uromyces (Pucciniaceae, Uredinales) inferred from partial protein coding gene phylogenies. Mycol Res. 111:163–175.
  • van der Merwe Mm, Walker J, Ericson L, Ericsson JJ, van der Merwe MM. 2008. Coevolution with higher taxonomic host groups within the Puccinia/Uromyces rust lineage obscured by host jumps. Mycol Res. 112:1387–1408.
  • Vialle A, Feau N, Allaire M, Didukh M, Martin F, Moncalvo J-M, Hamelin RC. 2009. Evaluation of mitochondrial genes as DNA barcode for Basidiomycota. Mol Ecol Res. 9:99–113.
  • Vilgalys R, Hester M. 1990. Rapid genetic identification and mapping of enzymatically am­plified ribosomal DNA from several Cryptococcus species. J Bacteriol. 172:4238–4246.
  • White TJ, Bruns T, Lee S, Taylor JW. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ, eds. PCR Protocols: A Guide to Methods and Applications. New York: Academic Press, Inc; pp. 315–324.
  • Wingfield BD, Ericson L, Szaro T, Burdon JJ. 2004. Phylogenetic patterns in the Uredinales. Australas Plant Pathol. 33:327–335.
  • Wood AR, Lutz M, Bauer R, Oberwinkler F. 2014. Morphology and phylogenetics of Stomatisora, including Stomatisora psychotriicola sp. nov. Mycol Prog. 13:1097–1104.
  • Yun HY, Minnis AM, Kim YH, Castlebury LA, Aime MC. 2011. The rust genus Frommeella revisited: a later synonym of Phragmidium after all. Mycologia. 103:1451–1463.
  • Zhao P, Zhang Z-F, Hu D-M, Tsui K-M, Qi X-H, Phurbu D, Gafforov Y, Cai L. 2021. Contribution to rust flora in China I, tremendous diversity from natural reserves and parks. Fungal Divers. 110:1–58.
  • Zuluaga C, Buriticá P, Marín M. 2011. Phylogenetic analysis of rust fungi (Uredinales) from the Colombian Andean region using 28S ribosomal DNA sequences. Rev Biol Trop. 59:517–540.

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