Dehydration and self-cell cleaning by a single cell drives the formation of fruiting body of Lamproderma columbinum (Myxomycetes)

LITERATURE CITED

• Akematsu T, Pearlman RE, Endoh H. 2010. Gigantic macroautophagy in programmed nuclear death of Tetrahymena thermophila. Autophagy. 6:901–911.
   PubMed Web of Science ®Google Scholar
• Alexopoulos CJ. 1960. Gross morphology of the plasmodium and its possible significance in the relationships among the myxomycetes. Mycologia. 52:1–20.
   Web of Science ®Google Scholar
• Bisby GR. 1914. Some observations on the formation of the capillitium and the development of Physarella mirabilis Peck and Stemonitis fusca Roth. Am J Bot. 1:274–288.
   Google Scholar
• Blackwell M. 1974. A study of sporophore development in the Myxomycetes Protophysarum philoiogenum. Arch Microbiol. 99:331–344.
   PubMed Web of Science ®Google Scholar
• Bohnert KA, Kenyon C. 2017. A lysosomal switch triggers proteostasis renewal in the immortal C. elegans germ lineage. Nature. 551:629–633.
   PubMed Web of Science ®Google Scholar
• Cadman EJ. 1931. The life-history and cytology of Didymium nigripes Fr. Trans. R. Soc. Edinburgh. 57:93–142.
   Google Scholar
• Castillo A, Moreno G, Illana C, Lago J. 1997. A critical study of some stemonitales. Mycol Res. 101(11):1329–1340.
   Web of Science ®Google Scholar
• Charvat I, Cronshaw J, Ross IK. 1974. Development of the Capillitium in Perichaena vermicularis A plasmodial slime mold. Protoplasma. 80:207–221.
   PubMed Web of Science ®Google Scholar
• Charvat I, Ross I, Cronshaw J. 1972. Autophagy during differentiation in the slime mold, Perichaena vermicularis. J Cell Biol. 55:38a.
   Google Scholar
• Charvat I, Ross IK, Cronshaw J. 1973a. Ultrastructure of the plasmodial slime mold Perichaena vermicularis. I. Plasmodium. Protoplasma. 76:333–351.
   Web of Science ®Google Scholar
• Charvat I, Ross IK, Cronshaw J. 1973b. Ultrastructure of the plasmodial slime mold Perichaena vermicularis. II. Formation of the peridium. Protoplasma. 78:1–19.
   PubMed Web of Science ®Google Scholar
• Clark J, Haskins EF. 2014. Sporophore morphology and development in the myxomycetes: a review. Mycosphere. 5:153–170.
   Web of Science ®Google Scholar
• Eskelinen EL. 2008. To be or not to be? Examples of incorrect identification of autophagic compartments in conventional transmission electron microscopy of mammalian cells. Autophagy. 4:257–260.
   PubMed Web of Science ®Google Scholar
• Eskelinen EL, Reggiori F, Baba M, Kovács AL, Seglen PO. 2011. Seeing is believing - The impact of electron microscopy on autophagy research. Autophagy. 7:935–956.
   PubMed Web of Science ®Google Scholar
• Fiore-Donno AM, Berney C, Pawlowski J, Baldauf SL. 2005. Higher-order phylogeny of plasmodial slime molds (Myxogastria) based on elongation factor 1-A and small subunit rRNA gene sequences. J Eukaryotic Microbiol. 52:201–210.
   PubMed Web of Science ®Google Scholar
• Fiore-Donno AM, Kamono A, Mayer M, Schnittler M, Fukui M, Cavalier-Smith T. 2012. 18S rDNA phylogeny of lamproderma and alied genera (stemonitales, myxomycetes, amoebozoa). PloS One. 7:e35359.
   PubMed Web of Science ®Google Scholar
• Fiore-Donno AM, Meyer M, Baldauf SL, Pawlowski J. 2008. Evolution of dark-spored Myxomycetes (Slime molds): molecules versus morphology. Mol Phylogenet Evol. 46:878–89.
   PubMed Web of Science ®Google Scholar
• Fiore-Donno AM, Novozhilov YK, Meyer M, Schnittler M. 2011. Genetic structure of two protist species (Myxogastria, Amoebozoa) suggests asexual reproduction in sexual amoebae. Plos One. 6:e22872.
   PubMed Web of Science ®Google Scholar
• Goodwin DC. 1961. Morphogenesis of the sporangium of Comatricha. Am J Bot. 48:148–154.
   Web of Science ®Google Scholar
• Gray WD, Alexopoulos CJ. 1968. Biology of the Myxomycetes. New York: The Ronald Press Company; p. 288.
   Google Scholar
• Hagelstein R. 1942. A new genus of the mycetozoa. Mycologia. 34:593–594.
   Google Scholar
• Hargelstein R. 1944. The Mycetozoa of North America. New York (USA): Published by the Author; p. 306.
   Google Scholar
• Harper RA, Dodge BO. 1914. The formation of the capillitium in certain myxomycetes. Ann Botany. 28:1–18.
   Google Scholar
• Haskins EF, McGuinness MD. 1989. Sporophore ultrastructure of Echinostelium arboreum. Mycologia. 81:303–07.
   Web of Science ®Google Scholar
• Haskins EF, Wrigley de Basanta D. 2008. Methods of agar culture of myxomycetes: an overview. Revista Mexicana de Micologia. 27:1–8.
   Google Scholar
• Indira PU. 1971. The life cycle of Stemonitis herbatica. II. Trans Br Mycol Soc. 56:251–259.
   Web of Science ®Google Scholar
• Ing B. 1999. The Myxomycetes of Britain and Ireland. Slough (England): The Richmond Publishing Co. Ltd; p. 374.
   Google Scholar
• Kalyanasundaram I. 1973. Capillitial development. In: University of Madras, editor. Stemonitis. Madras (India): Taxonomy of Fungi I; p. 9–13.
   Google Scholar
• Keller HW, Everhart SE, Kilgore CM. 2021. The Myxomycetes: introduction, basic biology, life cycle, genetics, and reproduction. In: Rojas C, Stephenson SL, editors. Myxomycetes: biology, systematic, biogeography, and Ecology. Second ed. Elsevier: Academic Press; p. 1–45.
   Google Scholar
• Klionsky DJ, Abdel-Aziz AK, Abdelfatah S, Abdellatif M, Abdoli A, Abel S, Abeliovich H, Abildgaard MH, Abudu YP, Abraham AA, et al. 2021. Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition). Autophagy. 17:1–382.
   PubMed Web of Science ®Google Scholar
• Kowalski DT. 1968. Observations on the genus Lamproderma. Mycologia. 60:756–768.
   Web of Science ®Google Scholar
• Kremer JR, Mastronarde DN, McIntosh JR. 1996. Computer visualization of three-dimensional image data using IMOD. J Struct Biol. 116:71–76.
   PubMed Web of Science ®Google Scholar
• Lado C. 1992. Collaria chinophila, A new Myxomycetes from Spain. Anales Jardín Botanico De Madrid. 50(1):9–13.
   Google Scholar
• Leontyev DV, Schnittler M, Stephenson SL, Novozhilov YK, Shchepin ON. 2019. Towards a phylogenetic classification of the Myxomycetes. Phytotaxa. 399:209–238.
   Web of Science ®Google Scholar
• Lister A. 1925. A monograph of the Mycetozoa: a descriptive catalogue of the species in the herbarium of the British museum. Third ed. London: British Museum (Natural History). p. xxxii + 296 + 223 plates. revised by Lister G.
   Google Scholar
• Lister G. 1910. Colloderma, a new genus of mycetozoa. J Botany. 48:310–312.
   Google Scholar
• Lister G. 1923. Lamproderma columbinum Rost. and its varieties. Trans Br Mycol Soc. 9:32–34.
   Google Scholar
• Luo M, Zhao X, Song Y, Cheng H, Zhou R. 2016. Nuclear autophagy: an evolutionarily conserved mechanism of nuclear degradation in the cytoplasm. Autophagy. 11:1973–1983.
   Web of Science ®Google Scholar
• Martin GW, Alexopoulos CL. 1969. The Myxomycetes. Iowa City: University of Iowa press; p. 576.
   Google Scholar
• Martin GW, Alexopoulos CL, Farr ML. 1983. The genera of myxomycetes. Iowa City: University of Iowa press; p. 102.
   Google Scholar
• Mijaljica D, Devenish RJ. 2013. Nucleophagy at a glance. J Cell Sci. 126:4325–4330.
   PubMed Web of Science ®Google Scholar
• Mims CW. 1969. Capillitial formation in Arcyria cinerea. Mycologia. 61:784–798.
   Web of Science ®Google Scholar
• Mims CW. 1972. Centrioles and Golgi apparatus in postmeiotic spores of the myxomycete Stemonitis virginiensis. Mycologia. 64:452–456.
   PubMed Web of Science ®Google Scholar
• Mims CW. 1973. A light and electrom microscopic study of sporulation in the myxomycete Stemonitis virginiensis. Protoplasma. 77:35–54.
   Web of Science ®Google Scholar
• Mims CW, Alexopoulos CJ. 1979. Introductory mycology. third ed. New York: John Wiley & Sons; p. 632.
   Google Scholar
• Mims CW, Rogers MA. 1975. A light and electron microscopic study of stalk formation in the myxomycete Arcyria cinerea. Mycologia. 67:638–649.
   Web of Science ®Google Scholar
• Mubarak Ali N, Das JM, Kalyanasundaram I. 1992. Extracellular amylase in myxomycete plasmodia and its fate during differentiation. Mycol Res. 96:990–992.
   Web of Science ®Google Scholar
• Nagai R, Ishima Y, Kukita F, Takenaka T. 1975. Calcium and magnesium contents of ectoplasm and endoplasm of Physarum polycephalum plasmodium. Protoplasma. 86:169–174.
   PubMed Web of Science ®Google Scholar
• Nakagawa I, Amano A, Mizushima N, Yamamoto A, Yamaguchi H, Kamimoto T, Nara A, Funao J, Nakata M, Tsuda K, et al. 2004. Autophagy defends cells against invading group a Streptococcus. Science. 306:1037–1039.
   PubMed Web of Science ®Google Scholar
• Nannega-Bremekamp NE. 1991. A guide to temperature Myxomycetes. United Kingdom: Bristol Biopress Let. 410.
   Google Scholar
• Nannenga-Bremekamp NE. 1989. Notes on myxomycetes XXII. Seven new species of Myxomycetes. Proc Kon Ned Acad Wetensch. 92(4):505–515.
   Google Scholar
• Novozhilov YK, Rollins AW, Shchepin ON, Schnittler M. 2021. Ecology and distribution of myxomycetes. In: Rojas C, Stephenson SL, editors. Myxomycetes: biology, systematic, biogeography, and ecology. 2nd ed. Cambridge (MA): Elsevier: Academic Press; p. 325–376.
   Google Scholar
• Novozhilov YK, van Hooff H, Jagers M. 2015. Trichioides iridescens, a new genus and new species (incertae sedis in Myxomycetes). Mycol Progr. 14. doi:10.1007/s11557-014-1018-7
   Web of Science ®Google Scholar
• Oyston JW, Wilkinson M, Ruta M, Wills MA. 2022. Molecular phylogenies map to biogeography better than morphological ones. Commun Biol. 5:521.
   PubMed Web of Science ®Google Scholar
• Persoon CH. 1795. Observations mycologicae. Ann Bot (Usteri). 15:1–39.
   Google Scholar
• Poulain M, Meyer M, Bozonnet J. 2011. Les Myxomycétes. Vol. 2. Sevier (France): Fédération mycologique et botanique Dauphiné-Savoie; p. 568.
   Google Scholar
• Ross IK. 1957. Capillitial formation in the Stemonitaceae. Mycologia. 49:809–819.
   Web of Science ®Google Scholar
• Ross IK. 1973. The Stemonitomycetidae, a new subclass of Myxomycetes. Mycologia. 65:477–485.
   Web of Science ®Google Scholar
• Rostafinski JT. 1873. Versuch eines systems Mycetozoan. Strassburg: Druck Von Friedrich Wolff; p. 21.
   Google Scholar
• Schindelin J, Arganda-Carreras I, Frise E, Kaynig V, Longair M, Pietzsch T, Preibisch S, Rueden C, Saalfeld S, Schmid B, et al. 2012. Fiji: an open-source platform for biological-image analysis. Nat Methods. 9:676–682.
   PubMed Web of Science ®Google Scholar
• Schnittler M, Degamac NHA, Woyzichovski J, Novozhilov YK. 2021. Biogeographical patterns in myxomycetesn. In: Rojas C, Stephenson SL, editors. Myxomycetes: biology, systematic, biogeography, and Ecology. Second ed. Cambridge (MA): Elsevier: Academic Press; p. 377–416.
   Google Scholar
• Schnittler M, Unterseher M, Pfeiffer T, Novozhilov YK, Fiore-Donno AM. 2010. Ecology of sandstone ravine myxomycetes from Saxonian Switzerland (Germany). Nova Hedwigia. 90:277–302.
   Web of Science ®Google Scholar
• Schuster FL. 1969. Nuclear degeneration during spore formation in the true slime mold, Didymium nigripes. J Ultrastruct Res. 29:171–181.
   PubMedGoogle Scholar
• Shemesh N, Ben-Zvi A. 2018. No excess baggage: new life starts with a clean slate. Mol Cell. 69:163–164.
   PubMed Web of Science ®Google Scholar
• Shibutani ST, Yoshimori T. 2014. A current perspective of autophagosome biogenesis. Cell Res. 24:58–68.
   PubMed Web of Science ®Google Scholar
• Stephenson SL, Schnittler M. 2017. Myxomycetes, and Archibald JM, et al. editors. Handbook of the protists. Cham, Switzerland: Springer International Publishing; p. 1405–1431.
   Google Scholar
• Strasburger E. 1884. Zur entwickelungsgeschichte der sporangien von Trichia fallax. Bot Zeltung. 13:305–316.
   Google Scholar
• Tesmer J, Schnittler M. 2007. Sedimiation velocity of myxomycete spores. Mycol Progress. 6:229–234.
   Web of Science ®Google Scholar
• Thomas JR, Aldrich HC. 1982. Sporangia, spherules, and microcysts. In: Aldrich HC, Daniel JW, editors. Cell biology of Physarum and Didymium. Volume II. Differentiation, metabolism, and methodology. New York: Academic Press; p. 21–75.
   Google Scholar
• Tran H, Cheirsilp B, Louhasakul Y, Stephenson SL. 2017. Concentration and water content on direct transesterification of Physarum polycephlaum for biodiesel production. SRL Biotechnol Bioeng. 1(1):1–5.
   Google Scholar
• Tran H, Stephenson S, Pollock E. 2015. Evaluation of Physarum polycephalum plasmodial growth and lipid production using rice bran ans a carbon source. BMC Biotechnol. 15:67.
   PubMed Web of Science ®Google Scholar
• Walker LM, Hoppe T, Silliker ME. 2021. Molecular techniques and current research approach. In: Rojas C, Stephenson SL, editors. Myxomycetes: biology, systematic, biogeography, and ecology. 2nd ed. Cambridge (MA): Elsevier: Academic Press; p. 195–229.
   Google Scholar
• Welden AL. 1955. Capillitial development in the myxomycete Badhamia gracilis and Didymium ilidis. Mycologia. 47:714–728.
   Web of Science ®Google Scholar
• Wilson M, Cadman EJ. 1928. The life-history and cytology of Reticularia lycoperdon bull. Trans. R. Soc. Edinburgh. 55(3):555–608.
   Google Scholar
• Yajima Y. 2023. Revisiting the morphology of Lamproderma reveals incongruities among the taxonomic characteristics of higher classifications of Myxomycetes. Mycologia. doi:10.1080/00275514.2023.2170144
   Google Scholar
• Yajima Y, Hoshino T, Kondo N, Chang Y-C. 2018. Fruiting body formation of the nivicolous myxomycete Badhamia alpina in moist chamber culture. Mycoscience. 59:268–276.
   Web of Science ®Google Scholar
• Yamaguchi H, Nakagawa I, Yamamoto A, Amano A, Noda T, Yoshimori T. 2009. An initial step of GAS-containing autophagosome-like vacuoles formation requires Rab7. PLoS Pathog. 5:e1000670.
   PubMed Web of Science ®Google Scholar
• Yamamoto Y. 2021. Biota of Japanese Myxomycetes. Ibaraki (Japan): Committee for the publication of “Biota of Japanese Myxomycetes”; p. 1135.
   Google Scholar
• Yamamoto Y, Noda T. 2020. Autophagosome formation in relation to the endoplasmic reticulum. J Biomed Sci. 27:97.
   PubMed Web of Science ®Google Scholar