Raveneliopsis, a new genus of ravenelioid rust fungi on Cenostigma (Caesalpinioideae) from the Brazilian Cerrado and Caatinga

LITERATURE CITED

• Abbasi M, Aime MC. 2016. Records of rust caused by Tranzschelia mexicana on black cherry (Prunus serotina) in the United States. Plant Disease. 100:523. doi:10.1094/PDIS-06-15-0618-PDN.
   Google Scholar
• Aime MC. 2006. Toward resolving family-level relationships in rust fungi (Uredinales). Mycoscience. 47:112–122. doi:10.1007/S10267-006-0281-0.
   Google Scholar
• Aime MC, Bell C, Wilson A. 2018. Deconstructing the evolutionary complexity between rust fungi (Pucciniales) and their plant hosts. Stud Mycol. 89:143–152. doi:10.1016/j.simyco.2018.02.002.
   PubMed Web of Science ®Google Scholar
• Aime MC, McTaggart AR. 2021. A higher-rank classification for rust fungi, with notes on genera. Fungal Syst Evol. 7:21–47. doi:10.3114/fuse.2021.07.02.
   PubMedGoogle Scholar
• Altschul SF, Gish W, Miller M, Myers EW, Lipman DJ. 1990. Basic local and post-analysis of large phylogenies. J Mol Biol. 215(3):403–410.
   PubMed Web of Science ®Google Scholar
• Baxter J. 1966. New species of rust fungi from Mexico. Mycologia. 58:336–338. doi:10.2307/3756976.
   Google Scholar
• Beenken L. 2014. Pucciniales on Annona (Annonaceae) with special focus on the genus Phakopsora. Mycol Prog. 13:791–809. doi:10.1007/s11557-014-0963-5.
   Web of Science ®Google Scholar
• Berndt R. 1995. Comparative studies on the teliospore morphology and ontogeny of Spumula serispora, spec. nova, and Ravenelia texensis (Uredinales, Raveneliaceae). Plant Systematic Evolution. 200:79–88. doi:10.1007/BF0098474988.
   Google Scholar
• Berndt R, Freire F. 2000. Ravenelia cenostigmatis, a new rust fungus from Brazil. Mycoscience. 41:227–232. doi:10.1007/BF02489676.
   Google Scholar
• Blomquist CL, Scholler M, Scheck HJ. 2015. Detection of rust caused by Tranzschelia mexicana on Prunus salicifolia in the United States. Plant Dis. 99:1856. doi:10.1094/PDIS-03-15-0256-PDN.
   Google Scholar
• Borchsenius F 2009. FastGap 1.2. Denmark: department of biosciences, Aarhus University. http://www.aubot.dk/ FastGap_home.htm
   Google Scholar
• Cummins GB, Baxter JW. 1975. New Ravenelia (Uredinales) species. Mycotaxon. 2:195–203.
   Google Scholar
• Cummins GB, Hiratsuka Y. 2003. Illustrated genera of rust fungi. 3rd ed. Saint Paul, Minnesota: APS Press, American Phytopathological Society, St. Paul.
   Google Scholar
• Dianese JC, Inácio CA, Carvalho-Junior AA, Santos MDM, Cantillo-Pérez T, Pinho DB. 2022. Exploring the overlooked diversity of plant-associated Cerrado microfungi. RAPP-Revisão Anual de Patologia de Plantas. 28:69–101. doi:10.31976/0104-038321v280004.
   Google Scholar
• Dietel P. 1906. Monographie der Gattung Ravenelia Berk. Beihefte Bot Centralbl. 20:343–413.
   Google Scholar
• Doungsa-ard C, McTaggart AR, Geering ADW RG. 2018. Diversity of gall-forming rusts (Uromycladium, Pucciniales) on Acacia in Australia. Persoonia. 40:221–238. doi:10.3767/persoonia.2018.40.09.
   PubMed Web of Science ®Google Scholar
• Doungsa-ard C, McTaggart AR, Geering ADW, Dalisay TU, Ray J, Shivas RG. 2014. Uromycladium falcatarium sp. nov., the cause of gall rust on Paraserianthes falcataria in South-East Asia. Australasian Plant Pathol. 44:25–30. doi:10.1007/s13313-014-0301-z.
   Web of Science ®Google Scholar
• Ebinghaus M, Begerow D. 2018. Ravenelia piepenbringiae and Ravenelia hernandezii, two new rust species on Senegalia (Fabaceae, Mimosoideae) from Panama and Costa Rica. MycoKeys. 41:51–63. doi:10.3897/mycokeys.41.27694.
   Google Scholar
• Ebinghaus M, Maier W, Wingfield MJ, Begerow D. 2018. New host associations and a novel species for the gall-inducing acacia rust genus Ravenelia in South Africa. MycoKeys. 43:1–21. doi:10.1007/s11557-020-01556-w.
   Google Scholar
• Ebinghaus M, Santos MDM, Souza ESC, Barnes CW, Ndacnou MK, Vélez-Zambrano SM, Galvão-Elias S, Begerow D, Barreto RW, Dianese JC. 2022. Reinstatement and phylogenetic allocation of the palm rust genus Cerradoa in the Pucciniaceae, and establishment of Pseudocerradoa, gen. Nov. Mycologia 114:1–19. doi:10.1080/00275514.2022.2084672.
   PubMedGoogle Scholar
• Ebinghaus M, Wingfield MJ, Begerow D, Maier W. 2020. The genus Ravenelia in South Africa. Mycol Prog. 19:259–290. doi:10.1007/s11557-020-01556-w.
   Web of Science ®Google Scholar
• Gagnon E, Bruneau A, Hughes CE, Queiroz LP, Lewis GP. 2016. A new generic system for the pantropical Caesalpinia group (Leguminosae). PhytoKeys. 71:1–160. doi:10.3897/phytokeys.71.9203.
   Google Scholar
• Guindon S, Dufayard JF, Lefort V, Anisimova M, Hordijk W. 2010. New algorithms and methods to estimate maximum likelihood phylogenies: assessing the performance of phyml 3.0. Syst Biol. 59:307–321. doi:10.1093/sysbio/syq010.
   PubMed Web of Science ®Google Scholar
• Hennen JF, Cummins GB. 1990. New species and nomenclature of Ravenelia in Neotropica. Rep Tottori Mycol Inst. 28:1–14.
   Google Scholar
• Hennen JF, Figueiredo MB, Carvalho AA Jr, Hennen PG. 2005. Catalogue of the species of plant rust fungi (Uredinales) of Brazil. [ accessed 2021 Jan 18]. http://jbrj.gov.br/sites/all/themes/corporateclean/content/publicacoes/catalogue.pdf.
   Google Scholar
• Hiermath RV, Pavgi MS. 1976. Development of telial head in Ravenelia species. Mycopathologia. 59:95–104. doi:10.1007/BF00493561.
   Google Scholar
• Hiermath RV, Pavgi MS. 1979. Validity of the genus Kernkampella. Sydowia. 31:55–57.
   Google Scholar
• Hoang DT, Chernomor O, von Haeseler A, Minh BQ, Vinh LS. 2018. UFBoot2: improving the ultrafast bootstrap approximation. Mol Biol Evol. 35:518–522. doi:10.1093/molbev/msx281.
   PubMed Web of Science ®Google Scholar
• Holcomb GE, Aime MC. 2010. First report of Plumeria spp. rust caused by Coleosporium plumeriae in Lousiana and Malaysia and Catheranthus roseus, a new host of this rust. Plant Disease. 94:272. doi:10.1094/PDIS-94-2-0272C.
   PubMed Web of Science ®Google Scholar
• Ji J-X, Li Z, Li Y, Kakishima M. 2019. Life cycle of Nothoravenelia japonica and its phylogenetic position in Pucciniales, with special reference to the genus Phakopsora. Mycological Progress. 18:855–864. doi:10.1007/s11557-019-01496-0.
   Google Scholar
• Kalyaanamoorthy S, Minh BQ, Wong TKF, von Haeseler A, Jermiin LS. 2017. ModelFinder: fast model selection for accurate phylogenetic estimates. Nat Methods. 14:587–589. doi:10.1038/nmeth.4285.
   PubMed Web of Science ®Google Scholar
• Katoh K, Standley DM. 2014. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 30:772–780. doi:10.1093/molbev/mst010.
   Web of Science ®Google Scholar
• Kumar S, Stecher G, Tamura K. 2016. MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Mol Biol Evol. 33:1870–1874. doi:10.1093/molbev/msw054.
   PubMed Web of Science ®Google Scholar
• Landan G, Graur D. 2008. Local reliability measures from sets of co-optimal multiple sequence alignments. Biocomputing. 13:15–24. doi:10.1142/9789812776136_0003.
   Google Scholar
• Larget B, Simon DL. 1999. Marcov Chain Monte Carlo algorithms for the Bayesian analysis of phylogenetic trees. Mol Biol Evol. 16:750–759.
   Web of Science ®Google Scholar
• Long WH. 1903. The Ravenelias of the United States and Mexico. Bot Gaz. 35:111–133. doi:10.1086/328324.
   Google Scholar
• Maier W, Begerow D, Weiß M, Oberwinkler F. 2003. Phylogeny of the rust fungi: an approach using nuclear large subunit ribosomal DNA sequences. Can J Bot. 81:12–23. doi:10.1139/b02-113.
   Google Scholar
• Maier W, McTaggart AR, Roux J J, Wingfield MJ. 2016. Phakopsora myrtacearum sp. nov., a newly described rust (Pucciniales) on eucalypts in eastern and Southern Africa. Plant Pathol. 65:189–195. doi:10.1111/ppa.12406.
   Web of Science ®Google Scholar
• McTaggart AR, Doungsa-ard C, Geering ADW, Aime MC, Shivas RG. 2015. A Coevolutionary relationship exists between Endoraecium (Pucciniales) and its Acacia hosts in Australia. Persoonia. 35:50–62. doi:10.3767/003158515X687588.
   PubMed Web of Science ®Google Scholar
• McTaggart AR, Geering ADW, Shivas RG. 2013. Thekopsora minima causes blueberry rust in south-eastern Queensland and northern New South Wales. Aust Plant Dis Notes. 8:81–83. doi:10.1007/s13314-013-0101-2.
   Google Scholar
• McTaggart AR, Shivas RG, van der Nest MA, Roux J, Wingfield BD, Wingfield MJ. 2016. Host jumps shaped the diversity of extant rust fungi (Pucciniales). New Phytol. 209:1149–1158. doi:10.1111/nph.13686.
   PubMed Web of Science ®Google Scholar
• Minh BQ, Schmidt HA, Chernomor O, Schrempf D, Woodhams MD, von Haeseler A, Lanfear R. 2020. IQ- TREE 2: new models and efficient methods for phylogenetic inference in the genomic era. Mol Biol Evol. 37:1530–1534. doi:10.1093/molbev/msaa015.
   PubMed Web of Science ®Google Scholar
• Moncalvo JM, Wang HH, Hseu RS. 1995. Phylogenetic relationships in Ganoderma inferred from the internal transcribed spacers and 25S ribosomal DNA sequences. Mycologia. 87:223–238. doi:10.1080/00275514.1995.12026524.
   Web of Science ®Google Scholar
• Ono Y, Chatasiri S, Tanaka E. 2020. Ochropsora staphyleae, a new rust pathogen of Japanese bladdernut, found in central Japan. Mycoscience. 61:62–64.
   Google Scholar
• Pegg GS, Giblin FR, McTaggart AR, Guymer GP, Taylor H, Ireland KD, Shivas RG, Perry S. 2014. Puccinia psidii in Queensland, Australia: disease symptoms, distribution and impact. Plant Pathology. 63:1005–10021. doi:10.1111/ppa.12173.
   Web of Science ®Google Scholar
• Penn O, Privman E, Ashkenazy H, Landan G, Graur D, Pupko T. 2010. GUIDANCE: a web server for assessing alignment confidence scores. Nucleic Acids Res. 38:23–28. doi:10.1093/nar/gkq443.
   PubMed Web of Science ®Google Scholar
• Rajendren RB. 1970. Kernkampella: a new genus in the Uredinales. Mycologia. 63:837–843. doi:10.2307/3757670.
   Google Scholar
• Scholler M, Lutz M, Aime MC. 2019. Repeated formation of correlated species in Tranzschelia (Pucciniales). Mycol Prog. 18:295–303. doi:10.1007/s11557-018-1417-2.
   Web of Science ®Google Scholar
• Shin HD, Lee SH, Jeon CH, Choi WI. 2019. First report of rust caused by Tranzschelia discolor on Peach (Prunus persica) in Korea. Plant Disease. 103:764. doi:10.1094/PDIS-07-18-1208-PDN.
   Google Scholar
• Simmons MP, Ochotena H. 2000. Gaps as characters in sequence-based phylogenetic analyses. Syst Biol. 49:369–381. doi:10.1093/sysbio/49.2.369.
   PubMed Web of Science ®Google Scholar
• Sydow H. 1921. Die Verwertung der Verwandtschaftsverhältnisse und des gegenwärtigen Entwicklungsganges zur Umgrenzung der Gattungen bei den Uredineen. Ann Mycol. 19:161–175.
   Google Scholar
• Sydow P, Sydow H. 1915. Ravenelia Berk. In: Brothers Borntraeger editor. Monographia Uredinearum seu Specierum Omnium ad hunc usque Diem Descriptio et Adumbratio Systematica 3. Leipzig (Germany). p. 225–310.
   Google Scholar
• Sydow H, Sydow P. 1916. Fungi amazonici a cl. E. Ule Lecti. Ann Mycol 14:65–97.
   Google Scholar
• Vialle A, Feau N, Allaire M, Didukh M, Martin F, Moncalvo J-M, Hamelin RC. 2009. Evaluation of mitochondrial genes as DNA barcode for Basidiomycota. Mol Ecol Res. 9:99–113. doi:10.1111/j.1755-0998.2009.02637.x.
   PubMed Web of Science ®Google Scholar
• Viégas AP. 1945. Alguns fungos do Brasil. IV. Uredinales. Bragantia. 5:1–144. doi:10.1590/S0006-87051945000100001.
   Google Scholar
• Vilgalys R, Hester M. 1990. Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. J Bacteriol. 172:4238–4246. doi:10.1128/jb.172.8.4238-4246.1990.
   PubMed Web of Science ®Google Scholar
• White TJ, Bruns T, Lee S, Taylor JW. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ, editors. PCR protocols: a guide to methods and applications. New York, USA: Academic Press, Inc; p. 315–324.
   Google Scholar