Association of soil fungal community composition with incidence of Fusarium wilt of banana in Malaysia

LITERATURE CITED

• Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. 1990. Basic local alignment search tool. J Mol Biol. 215:403–10.
   PubMed Web of Science ®Google Scholar
• Berg G, Köberl M, Rybakova D, Müller H, Grosch R, Smalla K. 2017. Plant microbial diversity is suggested as the key to future biocontrol and health trends. FEMS Microbiol Ecol. 93:5.
   Web of Science ®Google Scholar
• Bidellaoui B, Segarra G, Hakkou A, Trillas MI. 2019. Beneficial effects of Rhizophagus irregularis and Trichoderma asperellum strain T34 on growth and fusarium wilt in tomato plants. J Plant Pathol. 101:121–127.
   Web of Science ®Google Scholar
• Chen. 2017. Fungi on banana in northern Taiwan [PhD dissertation]. Taoyuan City, Taiwan: National Central University.
   Google Scholar
• Crawford RH, Floyd M, Li CY. 2000. Degradation of serpentine and muscovite rock minerals and immobilization of cations by soil Penicillium spp. Phyton. 40:315–322.
   Web of Science ®Google Scholar
• Dal Bello G. 2008. First report of Trichothecium roseum causing postharvest fruit rot of tomato in Argentina. Australas Plant Dis Notes. 3:103–104.
   Google Scholar
• Dastogeer KM, Tumpa FH, Sultana A, Akter MA, Chakraborty A. 2020. Plant microbiome–an account of the factors that shape community composition and diversity. Curr Plant Biol. 23:1–5.
   Web of Science ®Google Scholar
• Dita M, Barquero M, Heck D, Mizubuti ES, Staver CP. 2018. Fusarium wilt of banana: current knowledge on epidemiology and research needs toward sustainable disease management. Front Plant Sci. 9:1468.
   PubMed Web of Science ®Google Scholar
• Dong L, Xu J, Feng G, Li X, Chen S. 2016. Soil bacterial and fungal community dynamics in relation to Panax notoginseng death rate in a continuous cropping system. Sci Rep. 6:1–11.
   PubMed Web of Science ®Google Scholar
• Edgar, Edgar RC. 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research. 32:1792–1797.
   PubMed Web of Science ®Google Scholar
• Enebe MC, Babalola OO. 2019. The impact of microbes in the orchestration of plants’ resistance to biotic stress: a disease management approach. Appl Microbiol Biotechnol. 103:9–25.
   PubMed Web of Science ®Google Scholar
• Fouda A, Awad MA, Eid AM, Saied E, Barghoth MG, Hamza MF, Hassan SED, Abdelbary S, Hassan SED. 2021. An Eco-Friendly Approach to the control of pathogenic microbes and anopheles stephensi malarial vector using magnesium oxide nanoparticles (Mg-NPs) fabricated by Penicillium chrysogenum. Int J Mol Sci. 22:5096.
   PubMed Web of Science ®Google Scholar
• Frąc M, Hannula SE, Bełka M, Jędryczka M. 2018. Fungal biodiversity and their role in soil health. Front Microbiol. 9:707.
   PubMed Web of Science ®Google Scholar
• Garrigues S, Gandía M, Castillo L, Coca M, Marx F, Marcos JF, Manzanares P. 2018. Three antifungal proteins from Penicillium expansum: different patterns of production and antifungal activity. Front Microbiol. 9:2370.
   PubMed Web of Science ®Google Scholar
• Garrigues S, Gandía M, Popa C, Borics A, Marx F, Coca M, Manzanares P. 2017. Efficient production and characterization of the novel and highly active antifungal protein AfpB from Penicillium digitatum. Scientific Reports. 7:1–13.
   PubMed Web of Science ®Google Scholar
• Hermans SM, Buckley HL, Lear G. 2019. Perspectives on the impact of sampling design and intensity on soil microbial diversity estimates. Front Microbiol. 10:1820.
   PubMed Web of Science ®Google Scholar
• Hu W, Yang B, He Z, Li G. 2021. Magnesium may be a key nutrient mechanism related to Fusarium wilt resistance: a new banana cultivar (Zhongjiao No. 9). PeerJ. 9:e11141.
   PubMed Web of Science ®Google Scholar
• Jamil FN, Hashim AM, Yusof MT, Saidi NB. 2022. Analysis of soil bacterial communities and physicochemical properties associated with Fusarium wilt disease of banana in Malaysia. Sci Rep. 12(1):1–11.
   PubMed Web of Science ®Google Scholar
• Jamil FN, Tang CN, Saidi NB, Lai KS, Baharum NA. 2019. Fusarium Wilt in banana: epidemics and management strategies. In: Baimey HK, Hamamouch N, Kolombia YA, editors. Horticultural crops. Rijeka (Croatia): IntechOpen. p. 1–26.
   Google Scholar
• Jarvis FG, Johnson MJ. 1950. The mineral nutrition of Penicillium chrysogenum Q176. J Bacteriol. 59:51–60.
   PubMed Web of Science ®Google Scholar
• Ji L, Nasir F, Tian L, Chang J, Sun Y, Zhang J, Tian C, Tian C. 2021. Outbreaks of root rot disease in different aged American Ginseng plants are associated with field microbial dynamics. Front Microbiol. 12:1634.
   Web of Science ®Google Scholar
• Kaushal M, Swennen R, Mahuku G. 2020. Unlocking the microbiome communities of banana (Musa spp.) under disease stressed (Fusarium wilt) and non-stressed conditions. Microorganisms. 8:443.
   PubMed Web of Science ®Google Scholar
• Kõljalg U, Nilsson RH, Abarenkov K, Tedersoo L, Taylor AFS, Bahram M, Bates ST, Bruns TD, Bengtsson-Palme J, Callaghan TM. 2013. Towards a unified paradigm for sequence - based identification of fungi. Mol Ecol. 22:5271–5277.
   PubMed Web of Science ®Google Scholar
• Lan X, Zhang J, Zong Z, Ma Q, Wang Y. 2017. Evaluation of the biocontrol potential of Purpureocillium lilacinum QLP12 against Verticillium dahliae in eggplant. Biomed Res Int. 2017:4101357.
   PubMed Web of Science ®Google Scholar
• Larkin RP. 2015. Soil health paradigms and implications for disease management. Annu Rev Phytopathol. 53:199–221.
   PubMed Web of Science ®Google Scholar
• Li C, Yang J, Li W, Sun J, Peng M. 2017. Direct root penetration and rhizome vascular colonization by Fusarium oxysporum f. sp. cubense are the key steps in the successful infection of Brazil Cavendish. Plant Dis. 101:2073–2078.
   PubMed Web of Science ®Google Scholar
• Li F, Zhang S, Wang Y, Li Y, Li P, Chen L, Han Y, Hu D, Feng B, Yue K. 2020. Rare fungus, Mortierella capitata, promotes crop growth by stimulating primary metabolisms related genes and reshaping rhizosphere bacterial community. Soil Biol Biochem. 151:108017.
   Web of Science ®Google Scholar
• Li H, Ostermann A, Karunarathna SC, Xu J, Hyde KD, Mortimer PE. 2018. The importance of plot size and the number of sampling seasons on capturing macrofungal species richness. Fungal Biol. 122:692–700.
   PubMed Web of Science ®Google Scholar
• Liu Y, Zhu A, Tan H, Cao L, Zhang R. 2019. Engineering banana endosphere microbiome to improve Fusarium wilt resistance in banana. Microbiome. 7:1–15.
   PubMed Web of Science ®Google Scholar
• McMurdie PJ, Holmes S, Watson M. 2013. Phyloseq: an R package for reproducible interactive analysis and graphics of microbiome census data. PloS One. 8:e61217.
   PubMed Web of Science ®Google Scholar
• Miao GP, Han J, Zhang KG, Wang SC, Wang CR. 2019. Protection of melon against Fusarium wilt-root knot nematode complex by endophytic fungi Penicillium brefeldianum HS-1. Symbiosis. 77:83–89.
   Web of Science ®Google Scholar
• Molina AB, Williams RC, Hermanto C, Suwanda, Komolong B, Kokoa P. 2010. Mitigating the threat of banana Fusarium wilt: understanding the agroecological distribution of pathogenic forms and developing disease management strategies (FR 2010-12). Australian Centre for International Agricultural Research.
   Google Scholar
• Mommer L, Cotton TA, Raaijmakers JM, Termorshuizen AJ, van Ruijven J, Hendriks M, Dumbrell AJ, van de Mortel JE, van der Paauw JW, Schijlen EGWM. 2018. Lost in diversity: the interactions between soil-borne fungi, biodiversity and plant productivity. New Phytol. 218:542–553.
   PubMed Web of Science ®Google Scholar
• Oksanen JFGB, Friendly M, Kindt R, Legendre P, McGlinn D, Minchin PR, Wagner H. 2018. Vegan: community ecology package. R Package Version. 2:6.
   Google Scholar
• Pascale A, Proietti S, Pantelides IS, Stringlis IA. 2020. Modulation of the root microbiome by plant molecules: the basis for targeted disease suppression and plant growth promotion. Front Plant Sci. 10:1741.
   PubMed Web of Science ®Google Scholar
• Praeg N, Pauli H, Illmer P. 2019. Microbial diversity in bulk and rhizosphere soil of Ranunculus glacialis along a high-alpine altitudinal gradient. Front Microbiol. 10:1429.
   PubMed Web of Science ®Google Scholar
• Puig CG, Cumagun CJR. 2019. Rainforest fungal endophytes for the bio-enhancement of banana toward Fusarium oxysporum f. sp. cubense Tropical Race 4. Arch Phytopathol Plant Prot. 52:776–794.
   Web of Science ®Google Scholar
• Qu Q, Zhang Z, Peijnenburg WJGM, Liu W, Lu T, Hu B, Qian H, Chen J, Lin Z, Qian H. 2020. Rhizosphere microbiome assembly and its impact on plant growth. J Agric Food Chem. 68:5024–5038.
   PubMed Web of Science ®Google Scholar
• Ray P, Lakshmanan V, Labbé JL, Craven KD. 2020. Microbe to microbiome: a paradigm shift in the application of microorganisms for sustainable agriculture. Front Microbiol. 11:3323.
   Web of Science ®Google Scholar
• Raza W, Yang W, Shen QR. 2008. Paenibacillus polymyxa: antibiotics, hydrolytic enzymes and hazard assessment. J Plant Pathol. 90:419–430.
   Web of Science ®Google Scholar
• Santoyo G, Pacheco CH, Salmerón JH, León RH. 2017. The role of abiotic factors modulating the plant-microbe-soil interactions: toward sustainable agriculture. Rev Span Journal Agricultural Research. 15(1):13.
   Web of Science ®Google Scholar
• Sasse J, Martinoia NT, Northen T. 2018. Feed your friends: do plant exudates shape the root microbiome? Trends Plant Sci. 23:25–41.
   PubMed Web of Science ®Google Scholar
• Shang Q, Yang G, Wang Y, Wu X, Zhao X, Hao H, Wang R, Xie Z, Zhang Y, Wang R. 2016. Illumina-based analysis of the rhizosphere microbial communities associated with healthy and wilted Lanzhou lily (Lilium davidii var. unicolor) plants grown in the field. World J Microbiol Biotechnol. 32:95.
   PubMed Web of Science ®Google Scholar
• Sharma-Poudyal D, Schlatter D, Yin C, Hulbert S, Paulitz T, Sarrocco S. 2017. Long-term no-till: a major driver of fungal communities in dryland wheat cropping systems. PLoS One. 12:e0184611.
   PubMed Web of Science ®Google Scholar
• Shen Z, Penton CR, Lv N, Xue C, Yuan X, Ruan Y, Shen Q, Shen Q. 2018. Banana Fusarium wilt disease incidence is influenced by shifts of soil microbial communities under different monoculture spans. Microb Ecol. 75:739–750.
   PubMed Web of Science ®Google Scholar
• Shi L, Du N, Shu S, Sun J, Li S, Guo S, Takumi T, Hashimoto R, Otani H, Pazour GJ. 2017. Paenibacillus polymyxa NSY50 suppresses Fusarium wilt in cucumbers by regulating the rhizospheric microbial community. Sci Rep. 7:1–13.
   PubMed Web of Science ®Google Scholar
• Sui X, Zhang R, Frey B, Yang L, Liu Y, Ni H, Li MH. 2021. Soil physicochemical properties drive the variation in soil microbial communities along a forest successional series in a degraded wetland in northeastern China. Ecol Evol. 11:2194–2208.
   PubMed Web of Science ®Google Scholar
• Tao C, Li R, Xiong W, Shen Z, Liu S, Wang B, Kowalchuk GA, Geisen S, Shen Q, Kowalchuk GA. 2020. Bio-organic fertilizers stimulate indigenous soil Pseudomonas populations to enhance plant disease suppression. Microbiome. 8:1–14.
   PubMed Web of Science ®Google Scholar
• Tkacz A, Poole P. 2015. Role of root microbiota in plant productivity. J Exp Bot. 66(8):2167–2175.
   PubMed Web of Science ®Google Scholar
• Wang Q, Zhou L, Jin H, Cong B, Yang H, Wang S. 2022. Investigating the responses of microbial communities to banana Fusarium Wilt in suppressive and conducive soils based on soil particle-size differentiation. Agronomy. 12(2):229.
   Web of Science ®Google Scholar
• Wei X, Wang X, Cao P, Gao Z, Chen AJ, Han J. 2020. Microbial community changes in the rhizosphere soil of healthy and rusty Panax ginseng and discovery of pivotal fungal genera associated with rusty roots. Biomed Res Int. 2020:8018525.
   PubMed Web of Science ®Google Scholar
• Win TT, Bo B, Malec P, Fu P. 2021. The effect of a consortium of Penicillium sp. and Bacillus spp. in suppressing banana fungal diseases caused by Fusarium sp. and Alternaria sp. J Appl Microbiol. 131:1890–1908.
   PubMed Web of Science ®Google Scholar
• Wu X, Shan Y, Li Y, Li Q, Wu C. 2020. The soil nutrient environment determines the strategy by which Bacillus velezensis HN03 suppresses Fusarium wilt in banana plants. Front Plant Sci. 11:1801.
   Web of Science ®Google Scholar
• Xiong W, Zhao Q, Xue C, Xun W, Zhao J, Wu H, Shen Q, Shen Q. 2016. Comparison of fungal community in black pepper-vanilla and vanilla monoculture systems associated with vanilla Fusarium wilt disease. Front Microbiol. 7:117.
   PubMed Web of Science ®Google Scholar
• Yang B, Yang DP, Gao ZY, Li M, Zhang ZK, Hu MJ. 2013. Toxicity test of 8 fungicides against Trichothecium roseum causing Mango fruit rot. J Trop Biol. 4:45–49.
   Google Scholar
• Yongmei L, Chengwu Z, Qi H, Zhongwen W. 2020. Analysis of fungi diversity in root zone soil of banana plants. Guihaia. 40:99–107.
   Google Scholar
• Zhang R, Vivanco JM, Shen Q. 2017. The unseen rhizosphere root–soil–microbe interactions for crop production. Curr Opin Microbiol. 37:8–14.
   PubMed Web of Science ®Google Scholar
• Zhao Q, Tang J, Li Z, Yang W, Duan Y. 2018. The influence of soil physico-Chemical properties and enzyme activities on soil quality of saline-alkali agroecosystems in western Jilin Province, China. Sustainability. 10:1529.
   Web of Science ®Google Scholar
• Zhao S, Chen X, Deng S, Dong X, Song A, Yao J, Chen F, Chen F. 2016. The effects of fungicide, soil fumigant, bio-organic fertilizer and their combined application on chrysanthemum Fusarium wilt controlling, soil enzyme activities and microbial properties. Molecules. 21:526.
   PubMed Web of Science ®Google Scholar
• Zheng SJ, García-Bastidas FA, Li X, Zeng L, Bai T, Xu S, Yang L, Li H, Fu G, Yu Y. 2018. New geographical insights of the latest expansion of Fusarium oxysporum f. sp. cubense tropical race 4 into the Greater Mekong Subregion. Front Plant Sci. 9:457.
   PubMed Web of Science ®Google Scholar
• Zhou D, Jing T, Chen Y, Wang F, Qi D, Feng R, Li H, Li H. 2019. Deciphering microbial diversity associated with Fusarium wilt-diseased and disease-free banana rhizosphere soil. BMC Microbiol. 19:1–13.
   PubMed Web of Science ®Google Scholar