Proteomic characterization of Pseudogymnoascus spp. isolates from polar and temperate regions

LITERATURE CITED

• Adamczyk M, Perez-Mon C, Gunz S, Frey B. 2020. Strong shifts in microbial community structure are associated with increased litter input rather than temperature in high Arctic soils. Soil Biol Biochem. 151:108054. doi:10.1016/j.soilbio.2020.108054.
   Web of Science ®Google Scholar
• Ali SH, Alias SA, Siang HY, Smykla J, Pang K-L, Guo S-Y, Convey P. 2013. Studies on diversity of soil microfungi in the hornsund area, spitsbergen. Poland Polar Res. 34:39–54. doi:10.2478/popore-2013-0006.
   Web of Science ®Google Scholar
• Arenz BE, Held BW, Jurgens JA, Blanchette RA. 2011. Fungal colonization of exotic substrates in Antarctica. Fungal Divers. 49:13–22. doi:10.1007/s13225-010-0079-4.
   Web of Science ®Google Scholar
• Bahram M, Hildebrand F, Forslund SK, Anderson JL, Soudzilovskaia NA, Bodegom PM, Bengtsson-Palme J, Anslan S, Coelho LP, Harend H, et al. 2018. Structure and function of the global topsoil microbiome. Nature. 560:233–237. doi:10.1038/s41586-018-0386-6.
   PubMed Web of Science ®Google Scholar
• Bai Y, Wang S, Zhong H, Yang Q, Zhang F, Zhuang Z, Yuan J, Nie X, Wang S. 2015. Integrative analyses reveal transcriptome-proteome correlation in biological pathways and secondary metabolism clusters in a. Flavus in response to temperature. Sci Rep. 5:14582. doi:10.1038/srep14582.
   PubMed Web of Science ®Google Scholar
• Barratt SR, Ennos AR, Greenhalgh M, Robson GD, Handley PS. 2003. Fungi are the predominant micro-organisms responsible for degradation of soil-buried polyester polyurethane over a range of soil water holding capacities. J Appl Microbiol. 95:78–85. doi:10.1046/j.1365-2672.2003.01961.x.
   PubMed Web of Science ®Google Scholar
• Batista-García RA, Kumar VV, Ariste A, Tovar-Herrera OE, Savary O, Peidro-Guzmán H, González-Abradelo D, Jackson SA, Dobson ADW, Sánchez-Carbente M, et al. 2017. Simple screening protocol for identification of potential mycoremediation tools for the elimination of polycyclic aromatic hydrocarbons and phenols from hyperalkalophile industrial effluents. J Environ Manage. 198:1–11. doi:10.1016/j.jenvman.2017.05.010.
   PubMed Web of Science ®Google Scholar
• Bhadauria V, Zhao W-S, Wang L-X, Zhang Y, Liu J-H, Yang J, Kong L-A, Peng Y-L. 2007. Advances in fungal proteomics. Microbiol Res. 162:193–200. doi:10.1016/j.micres.2007.03.001.
   PubMedGoogle Scholar
• Blehert DS, Hicks AC, Behr M, Meteyer CU, Berlowski-Zier BM, Buckles EL, Coleman JT, Darling SR, Gargas A, Niver R, et al. 2009. Bat white-nose syndrome: an emerging fungal pathogen? Science. 323:227. doi:10.1126/science.1163874.
   PubMed Web of Science ®Google Scholar
• Boer W, Folman LB, Summerbell RC, Boddy L. 2005. Living in a fungal world: impact of fungi on soil bacterial niche development. FEMS Microbiol Rev. 29:795–811. doi:10.1016/j.femsre.2004.11.005.
   PubMed Web of Science ®Google Scholar
• Bradford MM. 1976. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem. 72:248–254. doi:10.1016/0003-2697(76)90527-3.
   PubMed Web of Science ®Google Scholar
• Chatterjee M, Gupta S, Bhar A, Das S. 2012. Optimization of an efficient protein extraction protocol compatible with two-dimensional electrophoresis and mass spectrometry from recalcitrant phenolic rich roots of chickpea (cicer arietinum l.). Int J Proteomics. 2012:10. doi:10.1155/2012/536963.
   Google Scholar
• Chaturvedi V, DeFiglio H, Chaturvedi S. 2018. Phenotype profiling of white-nose syndrome pathogen pseudogymnoascus destructans and closely-related pseudogymnoascus pannorum reveals metabolic differences underlying fungal lifestyles. F1000Res. 7:665. doi:10.12688/f1000research.15067.2.
   PubMedGoogle Scholar
• Chaturvedi V, Springer DJ, Behr MJ, Ramani R, Li X, Peck MK, Ren P, Bopp DJ, Wood B, Samsonoff WA, et al. 2010. Morphological and molecular characterizations of psychrophilic fungus geomyces destructans from New York bats with white nose syndrome (wns). PLoS One. 5:e10783. doi:10.1371/journal.pone.0010783.
   PubMed Web of Science ®Google Scholar
• Chen S, Harmon AC. 2006. Advances in plant proteomics. Proteomics. 6:5504–5516. doi:10.1002/pmic.200600143.
   PubMed Web of Science ®Google Scholar
• Chomczynski P, Sacchi N. 2006. The single-step method of rna isolation by acid guanidinium thiocyanate-phenol-chloroform extraction: twenty-something years on. Nat Protoc. 1:581–585. doi:10.1038/nprot.2006.83.
   PubMed Web of Science ®Google Scholar
• Christen-Zaech S, Patel S, Mancini AJ. 2008. Recurrent cutaneous geomyces pannorum infection in three brothers with ichthyosis. J Am Acad Dermatol. 58(5 Suppl 1):S112–S113. doi:10.1016/j.jaad.2007.04.019.
   PubMed Web of Science ®Google Scholar
• Daim LD, Ooi TE, Yusof HM, Majid NA, Karsani SA. 2015. Optimization of protein extraction and two-dimensional electrophoresis protocols for oil palm leaf. Protein J. 34:304–312. doi:10.1007/s10930-015-9626-x.
   PubMed Web of Science ®Google Scholar
• Donovan PD, Gonzalez G, Higgins DG, Butler G, Ito K. 2018. Identification of fungi in shotgun metagenomics datasets. PLoS One. 13:e0192898. doi:10.1371/journal.pone.0192898.
   PubMed Web of Science ®Google Scholar
• Duncan S, Minasaki R, Farrell R, Thwaites J, Held B, Arenz B, Jurgens J, Blanchette R. 2008. Screening fungi isolated from historic discovery hut on ross island, Antarctica for cellulose degradation. Antarct Sci. 20:463–470. doi:10.1017/S0954102008001314.
   Web of Science ®Google Scholar
• Fabri JHTM, de Sá NP, Malavazi I, Del Poeta M. 2020. The dynamics and role of sphingolipids in eukaryotic organisms upon thermal adaptation. Prog Lipid Res. 80:101063. doi:10.1016/j.plipres.2020.101063.
   PubMed Web of Science ®Google Scholar
• Fricker L. 2018. Quantitative peptidomics: general considerations. In: Schrader M, Fricker L, editors. Peptidomics: methods and strategies. New York (NY): Springer. p. 121–140.
   Google Scholar
• Gargas A, Trest MT, Christensen M, Volk TJ, Blehert DS. 2009. Geomyces destructans sp. Nov. associated with bat white-nose syndrome. Mycotaxon. 108:147–154. doi:10.5248/108.147.
   Web of Science ®Google Scholar
• Hassan N, Rafiq M, Hayat M, Shah AA, Hasan F. 2016. Psychrophilic and psychrotrophic fungi: a comprehensive review. Rev Environ Sci Bio/Technol. 15:147–172.
   Web of Science ®Google Scholar
• Hay RJ, Ashbee HR. 2010. Mycology. In: Burns T, Breathnach S, Cox N, Griffiths C, editors. Rook’s textbook of dermatology. 8th ed. West Sussex: Wiley-Blackwell. p. 1–93.
   Google Scholar
• Hayes MA. 2012. The geomyces fungi: ecology and distribution. BioScience. 62:819–823. doi:10.1525/bio.2012.62.9.7.
   Web of Science ®Google Scholar
• Isola D, Marzban G, Selbmann L, Onofri S, Laimer M, Sterflinger K. 2011. Sample preparation and 2-de procedure for protein expression profiling of black microcolonial fungi. Fungal Biol. 115:971–77. doi:10.1016/j.funbio.2011.03.001.
   PubMed Web of Science ®Google Scholar
• Kochkina GA, Ivanushkina NE, Akimov VN, Gilichinskii DA, Ozerskaia SM. 2007. Halo- and psychrotolerant geomyces fungi from Arctic cryopegs and marine deposits. Mikrobiologiia. 76:39–47.
   PubMedGoogle Scholar
• Kolomytseva M, Myasoedova N, Samoilova A, Podieiablonskaia E, Chernykh A, Classen T, Pietruszka J, Golovleva L. 2017. Rapid identification of fungal laccases/oxidases with different ph-optimum. Process Biochem. 62:174–183. doi:10.1016/j.procbio.2017.07.027.
   Web of Science ®Google Scholar
• Kono Y. 1995. Apparent antibacterial activity of catalase: role of lipid hydroperoxide contamination. J Biochem. 117:42–46. doi:10.1093/oxfordjournals.jbchem.a124718.
   PubMed Web of Science ®Google Scholar
• Kosti I, Mandel-Gutfreund Y, Glaser F, Horwitz BA. 2010. Comparative analysis of fungal protein kinases and associated domains. BMC Genomics. 11:133. doi:10.1186/1471-2164-11-133.
   PubMed Web of Science ®Google Scholar
• Kramer A, Beck HC, Kumar A, Kristensen LP, Imhoff JF, Labes A. 2015. Proteomic analysis of anti-cancerous scopularide production by a marine microascus brevicaulis strain and its uv mutant. PLoS One. 10:e0140047. doi:10.1371/journal.pone.0140047.
   PubMed Web of Science ®Google Scholar
• Krishnan A, Convey P, Gonzalez-Rocha G, Alias SA. 2016. Production of extracellular hydrolase enzymes by fungi from king george island. Polar Biol. 39:65–76. doi:10.1007/s00300-014-1606-7.
   Web of Science ®Google Scholar
• Krishnan A, Convey P, Gonzalez M, Smykla J, Alias SA. 2017. Effects of temperature on extracellular hydrolase enzymes from soil microfungi. Polar Biol. 41:537–551. doi:10.1007/s00300-017-2215-z.
   Web of Science ®Google Scholar
• Lau BYC, Othman A. 2019. Evaluation of sodium deoxycholate as solubilization buffer for oil palm proteomics analysis. PLoS One. 14:e0221052. doi:10.1371/journal.pone.0221052.
   PubMed Web of Science ®Google Scholar
• Leushkin EV, Logacheva MD, Penin AA, Sutormin RA, Gerasimov ES, Kochkina GA, Ivanushkina NE, Vasilenko OV, Kondrashov AS, Ozerskaya SM. 2015. Comparative genome analysis of pseudogymnoascus spp. Reveals primarily clonal evolution with small genome fragments exchanged between lineages. BMC Genomics. 16:400. doi:10.1186/s12864-015-1570-9.
   PubMed Web of Science ®Google Scholar
• Maddela NR, Masabanda M, Leiva-Mora M. 2015. Novel diesel-oil-degrading bacteria and fungi from the ecuadorian Amazon rainforest. Wat Sci Technol. 71:1554–1561. doi:10.2166/wst.2015.142.
   PubMed Web of Science ®Google Scholar
• Minnis AM, Lindner DL. 2013. Phylogenetic evaluation of geomyces and allies reveals no close relatives of pseudogymnoascus destructans, comb. Nov., in bat hibernacula of eastern North America. Fungal Biol. 117:638–649. doi:10.1016/j.funbio.2013.07.001.
   PubMed Web of Science ®Google Scholar
• O’Donoghue AJ, Knudsen GM, Beekman C, Perry JA, Johnson AD, DeRisi JL, Craik CS, Bennett RJ. 2015. Destructin-1 is a collagen-degrading endopeptidase secreted by pseudogymnoascus destructans, the causative agent of white-nose syndrome. Proc Natl Acad Sci. 112:7478–7483. doi:10.1073/pnas.1507082112.
   PubMed Web of Science ®Google Scholar
• Ogaki MB, Teixeira DR, Vieira R, Lirio JM, Felizardo JPS, Abuchacra RC, Cardoso RP, Zani CL, Alves TMA, Junior PAS, et al. 2020. Diversity and bioprospecting of cultivable fungal assemblages in sediments of lakes in the antarctic peninsula. Fungal Biol. 124:601–611. doi:10.1016/j.funbio.2020.02.015.
   PubMed Web of Science ®Google Scholar
• Oliveros JC. 2007–2015. Venny. An interactive tool for comparing lists with venn’s diagrams. 2.1.0 ed. Madrid (Spain): BioinfoGP Service, Centro Nacional de Biotecnología, (CNB-CSIC).
   Google Scholar
• Palmer JM, Drees KP, Foster JT, Lindner DL. 2018. Extreme sensitivity to ultraviolet light in the fungal pathogen causing white-nose syndrome of bats. Nat Commun. 9:35. doi:10.1038/s41467-017-02441-z.
   PubMed Web of Science ®Google Scholar
• Pannkuk EL, Risch TS, Savary BJ. 2015. Isolation and identification of an extracellular subtilisin-like serine protease secreted by the bat pathogen pseudogymnoascus destructans. PLoS One. 10:e0120508. doi:10.1371/journal.pone.0120508.
   PubMed Web of Science ®Google Scholar
• Parente-Rocha JA, Tomazett MV, Pigosso LL, Bailão AM, Ferreira de Souza A, Paccez JD, Baeza LC, Pereira M, Silva Bailão MG, Borges CL, et al. 2018. In vitro, ex vivo and in vivo models: a comparative analysis of paracoccidioides spp. proteomic studies. Fungal Biol. 122:505–513.
   PubMed Web of Science ®Google Scholar
• Patel S. 2017. A critical review on serine protease: key immune manipulator and pathology mediator. Allergologia et Immunopathologia. 45:579–591. doi:10.1016/j.aller.2016.10.011.
   PubMed Web of Science ®Google Scholar
• Rice AV, Currah RS. 2006. Two new species of pseudogymnoascus with geomyces anamorphs and their phylogenetic relationship with gymnostellatospora. Mycologia. 98:307–318. doi:10.1080/15572536.2006.11832703.
   PubMed Web of Science ®Google Scholar
• Sahay S, Chouhan D. 2018. Study on the potential of cold-active lipases from psychrotrophic fungi for detergent formulation. J Genet Eng Biotechnol. 16:319–325. doi:10.1016/j.jgeb.2018.04.006.
   PubMedGoogle Scholar
• Seidl V. 2008. Chitinases of filamentous fungi: a large group of diverse proteins with multiple physiological functions. Fungal Biol Rev. 22:36–42. doi:10.1016/j.fbr.2008.03.002.
   Google Scholar
• Shuey MM, Drees KP, Lindner DL, Keim P, Foster JT. 2014. Highly sensitive quantitative pcr for the detection and differentiation of pseudogymnoascus destructans and other pseudogymnoascus species. Appl Environ Microbiol. 80:1726–1731.
   PubMed Web of Science ®Google Scholar
• Singh G, Arya SK. 2019. Antifungal and insecticidal potential of chitinases: a credible choice for the eco-friendly farming. Biocatal Agric Biotechnol. 20:101289. doi:10.1016/j.bcab.2019.101289.
   Web of Science ®Google Scholar
• Tajuddin N, Rizman-Idid M, Convey P, Alias Siti A. 2018. Thermal adaptation in a marine-derived tropical strain of fusarium equiseti and polar strains of pseudogymnoascus spp. under different nutrient sources. Bot Mar. 61:9. doi:10.1515/bot-2017-0049.
   Web of Science ®Google Scholar
• Tamadoni Jahromi S, Barzkar N. 2018. Marine bacterial chitinase as sources of energy, eco-friendly agent, and industrial biocatalyst. Int J Biol Macromol. 120:2147–2154. doi:10.1016/j.ijbiomac.2018.09.083.
   PubMed Web of Science ®Google Scholar
• Tesei D, Marzban G, Marchetti-Deschmann M, Tafer H, Arcalis E, Sterflinger K. 2015. Proteome of tolerance fine-tuning in the human pathogen black yeast exophiala dermatitidis. J Proteomics. 128:39–57. doi:10.1016/j.jprot.2015.07.007.
   PubMed Web of Science ®Google Scholar
• Tsuneda A. 1982. Scanning electron microscopy of pseudogymnoascus roseus. Mycologia. 74:844–847. doi:10.1080/00275514.1982.12021594.
   Web of Science ®Google Scholar
• Verant ML, Bohuski EA, Richgels KLD, Olival KJ, Epstein JH, Blehert DS. 2018. Determinants of pseudogymnoascus destructans within bat hibernacula: implications for surveillance and management of white-nose syndrome. J Appl Ecol. 55:820–829. doi:10.1111/1365-2664.13070.
   PubMed Web of Science ®Google Scholar
• Verant ML, Boyles JG, Waldrep W Jr, Wibbelt G, Blehert DS. 2012. Temperature-dependent growth of geomyces destructans, the fungus that causes bat white-nose syndrome. PLoS One. 7:e46280. doi:10.1371/journal.pone.0046280.
   PubMed Web of Science ®Google Scholar
• Wilson MB, Held BW, Freiborg AH, Blanchette RA, Salomon CE. 2017. Resource capture and competitive ability of non-pathogenic pseudogymnoascus spp. and p. destructans, the cause of white-nose syndrome in bats. PLoS One. 12:e0178968. doi:10.1371/journal.pone.0178968.
   PubMed Web of Science ®Google Scholar
• Wong HJ. 2019. Physiological changes and DNA damage repair in Arctic and Antarctic pseudogymnoascus spp. in response to ultraviolet-b radiation [dissertation]. University of Malaya.
   Google Scholar
• Zakharova K, Sterflinger K, Razzazi-Fazeli E, Noebauer K, Marzban G. 2014. Global proteomics of the extremophile black fungus Cryomyces antarcticus using 2d-electrophoresis. Nat Sci. 6:978–995. doi:10.4236/ns.2014.612090.
   Google Scholar
• Zhang T, Ren P, Chaturvedi V, Chaturvedi S. 2015. Development of an agrobacterium-mediated transformation system for the cold-adapted fungi pseudogymnoascus destructans and p. Pannorum. Fungal Genet Biol. 81:73–81. doi:10.1016/j.fgb.2015.05.009.
   PubMed Web of Science ®Google Scholar