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Original Articles

Molecular systematics of the New Zealand Pachycladon (Brassicaceae) complex: Generic circumscription and relationships to Arabidopsis sens. lat. and Arabis sens. lat.

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Pages 543-562 | Received 10 Sep 2001, Accepted 13 May 2002, Published online: 17 Mar 2010

References

  • Allan , H. H. 1961 . Flora of New Zealand , Vol. I. , Wellington : Government Printer .
  • Al‐Shehbaz , I. A. 1988 . The genera of Arabideae (Cruciferae; Brassicaceae) in the southeastern United States . Journal of the Arnold Arboretum , 69 : 85 – 106 .
  • Al‐Shehbaz , I. A. and O'Kane , S. 1995 . Placement of Arabidopsis parvula in Thellungiella (Brassicaceae) . Novon , 5 : 309 – 310 .
  • Al‐Shehbaz , I. A. and O'Kane , S. 1997 . Arabidopsis gamosepala and A. tuemurnica belong to Neotorularia (Brassicaceae) . Novon , 7 : 93 – 94 .
  • Al‐Shehbaz , I. A. , O'Kane , S. L. and Price , R. A. 1999 . Generic placement of species excluded from Arabidopsis . Novon , 9 : 296 – 307 .
  • Bailey , C. D. and Doyle , J. J. 1999 . Potential phylogenetic utility of the low‐copy nuclear gene pistillata in dicotyledonous plants: Comparison to nrDNA ITS and trnL intron in Sphaerocardamum and other Brassicaceae . Molecular Phylogenetics and Evolution , 13 : 20 – 30 .
  • Bailey , C. D. , Price , R. A. and Doyle , J. J. 2002 . Systematics of the halimolobine Brassicaceae: evidence from three loci and morphology . Systematic Botany , 27 : 318 – 332 .
  • Batt , G. E. , Braun , J. , Kohn , B. P. and McDougall , I. 2000 . Thermochronological analysis of the dynamics of the Southern Alps, New Zealand . Geological Society Association Bulletin , 112 : 250 – 266 .
  • Bowman , J. 1993 . Arabidopsis an atlas of morphology and development , New York : Springer‐Verlag .
  • Bricker , J. S. , Brown , G. K. and Lewis , T. L. P. 2000 . Status of Descurainia torulosa (Brassicaceae) . Western North American Naturalist , 60 : 426 – 432 .
  • Buckler , E. S. , Ippolito , A. and Holtsford , T. P. 1997 . The evolution of ribosomal DNA: divergent paralogues and phylogenetic implications . Genetics , 145 : 821 – 832 .
  • Chamberlain , C. P. and Poage , M. A. 2000 . Reconstructing the paleotopography of mountain belts from the isotopic composition of authigenic minerals . Geology , 28 : 115 – 118 .
  • Cheeseman , T. F. 1883 . On some recent additions to the flora of New Zealand . Transactions and Proceedings of the New Zealand Institute , 15 : 298 – 301 .
  • Cheeseman , T. F. 1925 . Manual of the New Zealand flora , 2nd ed. , Wellington : Government Printer .
  • Crespo , M. B. , Lledo , M. D. , Fay , M. F. and Chase , M. W. 2000 . Subtribe Vellinae (Brassiceae, Brassicaceae): a combined analysis of ITS nrDNA sequences and morphological data . Annals of Botany , 86 : 53 – 62 .
  • Felsenstein , J. 1985 . Confidence limits on phylogenies: An approach using the bootstrap . Evolution , 39 : 783 – 791 .
  • Francisco‐Ortega , J. , Fuertes‐Aguilar , J. , Gomez‐Campo , C. , Santos‐Guerra , A. and Jansen , R. K. 1999 . ITS sequence phylogeny of Crambe L. (Brassicaceae): molecular data reveal two Old World disjunctions . Molecular Phylogenetics and Evolution , 11 : 361 – 380 .
  • Franzke , A. , Pollmann , K. , Bleeker , W. , Kohrt , R. and Hurka , H. 1998 . Molecular systematics of Cardamine and allied genera (Brassicaceae): ITS and non‐coding chloroplast DNA . Folia Geobotanica , 33 : 225 – 240 .
  • Garnock‐Jones , P. J. 1987 . Orthographic changes In: Connor, H. E.; Edgar, E. Name changes in the indigenous New Zealand flora, 1960–1986 and Nomina Nova IV, 1983–1986 . New Zealand Journal of Botany , 25 : 115 – 170 .
  • Garnock‐Jones , P. J. 1991 . Seed morphology and anatomy of the New Zealand genera Cheesemania, Ischnocarpus, Iti, Notothlaspi, and Pachycladon (Brassicaceae) . New Zealand Journal of Botany , 29 : 71 – 82 .
  • Heenan , P. B. 1999 . Artificial intergeneric hybrids between the New Zealand endemic Ischnocarpus and Pachycladon (Brassicaceae) . New Zealand Journal of Botany , 37 : 595 – 601 .
  • Heenan , P. B. and Garnock‐Jones , P. J. 1999 . A new species combination in Cheesemania (Brassicaceae) . New Zealand Journal of Botany , 37 : 235 – 241 .
  • Hooker , J. D. 1855 . The botany of the Antarctic voyage. II. Flora Novae‐Zelandiae. Part II. Flowerless plants , London : Reeve .
  • Hooker , J. D. 1864 . Handbook of the New Zealand flora, Part 1 , London : Reeve .
  • Jacobson , D. J. , Lefebvre , S. H. , Ojerio , R. S. , Berwald , N. and Heikkinen , E. 1998 . Persistent, systemic, asymptomatic infections of Albugo candida, an oomycete parasite, detected in three wild crucifer species . Canadian Journal of Botany‐Revue Canadienne de Botanique , 76 : 739 – 750 .
  • Kirk , T. 1899 . The students’ flora of New Zealand and outlying islands , Wellington : Government Printer .
  • Koch , M. and Al‐Shehbaz , I. A. 2000 . Molecular systematics of the Chinese Yinshania (Brassicaceae): evidence from plastid and nuclear ITS DNA sequence data . Annals of the Missouri Botanical Gardens , 87 : 246 – 272 .
  • Koch , M. and Al‐Shehbaz , I. A. 2001 . Molecular data indicate complex intra‐ and intercontinental differentiation of American Draba (Brassicaceae) . Annals of the Missouri Botanical Garden , 89 : 88 – 109 .
  • Koch , M. and Mummenhoff , K. 2001 . Thlaspi s.str. (Brassicaceae) versus Thlaspi s.l.: morphological and anatomical characters in the light of ITS nrDNA sequence data . Plant Systematics Evolution , 227 : 209 – 225 .
  • Koch , M. , Huthmann , M. and Hurka , H. 1998 . Isozymes, speciation and evolution in the polyploid complex Cochlearia L. (Brassicaceae) . Botanica Acta , 111 : 411 – 425 .
  • Koch , M. , Mummenhoff , K. and Hurka , H. 1999a . Molecular phylogenetics of Cochlearia L. and allied genera based on nuclear ribosomal ITS DNA sequence analysis contradict traditional concepts of their evolutionary relationships . Plant Systematics and Evolution , 216 : 207 – 230 .
  • Koch , M. , Bishop , J. and Mitchell‐Olds , T. 1999b . Molecular systematics and evolution of Arabidopsis and Arabis . Plant Biology , 1 : 529 – 437 .
  • Koch , M. , Haubold , B. and Mitchell‐Olds , T. 2000 . Comparative evolutionary analysis of the chalcone synthase and alcohol dehydrogenase loci among different lineages of Arabidopsis, Arabis and related genera (Brassicaceae) . Molecular Biology Evolution , 17 : 1483 – 1498 .
  • Koch , M. , Haubold , B. and Mitchell‐Olds , T. 2001 . Molecular systematics of the Brassicaceae: evidence from coding plastidic matK and nuclear chs sequences . American Journal of Botany , 88 : 534 – 544 .
  • Löve , A. and Löve , D. 1976 . Nomenclatural notes on Arctic plants . Botaniska Notiser , 128 : 497 – 523 .
  • Maddison , W. P. and Maddison , D. R. 1992 . MacClade vers. 3.1: Analysis of phylogeny and character evolution , Sunderland, Massachussetts : Sinauer .
  • Mayer , M. S. and Soltis , P. S. 1999 . Intraspecific phylogeny analysis using ITS sequences: Insights from studies of the Streptanthus glandulosus complex (Cruciferae) . Systematic Botany , 24 : 47 – 61 .
  • Meyerowitz , E. M. and Somerville , C. R. 1994 . Arabidopsis , New York : Cold Spring Harbor Laboratory Press .
  • Mitchell , A. D. and Heenan , P. B. 2000 . Systematic relationships of New Zealand endemic Brassicaceae inferred from nrDNA ITS sequence data . Systematic Botany , 25 : 98 – 105 .
  • Mitchell , A. D. and Heenan , P. B. 2002 . Genetic variation within the Pachycladon (Brassicaceae) complex based on fluorescent AFLP data . Journal of the Royal Society of New Zealand , 32 : 427 – 443 .
  • Molloy , B. J. P. , Edgar , E. , Heenan , P. B. and de Lange , P. J. 1999 . New species of Poa (Poaceae) and Ischnocarpus (Brassicaceae) from limestone, North Otago, South Island, New Zealand . New Zealand Journal of Botany , 37 : 41 – 50 .
  • Mummenhoff , K. , Franzke , A. and Koch , M. 1997a . Molecular data reveal convergence in fruit characters used in the classification of Thlaspi s.l. (Brassicaceae) . Botanical Journal of the Linnean Society , 125 : 183 – 199 .
  • Mummenhoff , K. , Franzke , A. and Koch , M. 1997b . Molecular phylogenetics of Thlaspi s.l. (Brassicaceae) based on chloroplast DNA restriction site variation and sequences of the internal transcribed spacers of nuclear ribosomal DNA . Canadian Journal of Botany , 75 : 469 – 482 .
  • Mummenhoff , K. , Brüggemann , H. and Coja , U. 2001 . Pachyphragma and Gagria (Brassicaceae) revisited: molecular data indicate close relationship to Thlaspi s.str . Folia Geobotanica , 36 : 293 – 302 .
  • O'Kane , S. L. and Al‐Shehbaz , I. A. 1997 . A synopsis of Arabidopsis (Brassicaceae) . Novon , 7 : 323 – 327 .
  • O'Kane , S. and Al‐Shehbaz , I. A. 2002 . Phylogenetic position and generic limits of Arabidopsis (Brassicaceae) based on sequences of nuclear ribosomal DNA . Systematic Botany ,
  • O'Kane , S. , Schaal , B. and Al‐Shehbaz , I. A. 1996 . The origins of Arabidopsis suecica (Brassicaceae) as indicated by nuclear rDNA sequences . Systematic Botany , 21 : 559 – 566 .
  • Page , R. D. M. 1996 . TREEVIEW: An application to display phylogenetic trees on personal computers . Computer Applications in the Biosciences , 12 : 357 – 358 .
  • Philipson , W. R. 1957 . A new species of Pachycladon . Transactions and Proceedings of the Royal Society of New Zealand , 84 : 497 – 498 .
  • Posada , D. and Crandall , K. A. 1998 . MODELTEST: testing the model of DNA substitution . Bioinformatics , 14 : 817 – 818 .
  • Price , R. A. , Palmer , J. D. and Al‐Shehbaz , I. A. 1994 . “ Systematic relationships of Arabidopsis: a molecular and morphological perspective ” . In Arabidopsis , Edited by: Meyerowitz , E. M. and Somerville , C. R. 7 – 19 . New York : Cold Spring Harbor Laboratory Press .
  • Price , R. A. , Al‐Shehbaz , I. A. and O'Kane , S. L. 2001 . Beringia (Brassicaceae), a new genus of Arabidopsoid affinities from Russia and North America . Novon , 11 : 332 – 336 .
  • Roy , B. 2001 . Patterns of association between crucifers and their flower mimic pathogens: host jumps are more common than coevolution or cospeciation . Evolution , 55 : 41 – 53 .
  • Schulz , O. E. 1924 . Cruciferae‐Sisymbrieae . Das Pflanzenreich IV 105 (Heft 86) , : 1 – 388 .
  • Schulz , O. E. 1936 . “ Cruciferen. ” . In Die natürlichen Pflanzenfamilien 17b. , 2nd ed. , Edited by: Engler , A. and Harms , H. 227 – 658 . Leipzig : Engelmann .
  • Sokal , R. R. and Rohlf , F. J. 1981 . Taxonomic congruence in the Leptopodomorpha re‐examined . Systematic Zoology , 30 : 309 – 325 .
  • Swofford , D. L. 2000 . PAUP∗. Phylogenetic Analysis Using Parsimony (∗and other methods). Version 4 , Sunderland, Massachusetts, , USA : Sinauer .
  • Thompson , J. D. , Higgins , D. G. and Gibson , T. J. 1994 . CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions‐specific gap penalties and weight matrix choice . Nucleic Acids Research , 22 : 4673 – 4680 .
  • Widmer , A. and Baltisberger , M. 1999 . Molecular evidence for allopolyploid speciation and a single origin of the narrow endemic Draba ladina (Brassicaceae) . American Journal of Botany , 86 : 1282 – 1289 .
  • Yang , W.‐W. , Lai , K.‐N. , Tai , P.‐Y. , Ma , D.‐P. and Li , W.‐H. 1999 . Molecular phylogenetic studies of Brassica, Rorippa, Arabidopsis and allied genera based on the internal transcribed spacer region of 18S‐25S rDNA . Molecular Phylogenetics and Evolution , 13 : 455 – 462 .
  • Zunk , K. , Mummenhoff , K. , Koch , M. and Hurka , H. 1996 . Phylogenetic relationships of Thlaspi s. l. (subtribe Thlaspidinae, Lepidieae) and allied genera based on chloroplast DNA restriction‐site variation . Theoretical Applied Genetics , 92 : 375 – 381 .

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