272
Views
8
CrossRef citations to date
0
Altmetric
Original Articles

Phylogenetic relationships of Pachycladon (Brassicaceae) species based on three nuclear and two chloroplast DNA markers

&
Pages 377-386 | Received 14 Mar 2006, Accepted 27 Sep 2006, Published online: 17 Mar 2010

References

  • Álvarez , I and Wendel , JF . 2003 . Ribosomal ITS sequences and plant phylogenetic inference. . Molecular Phylogenetics and Evolution , 29 : 417 – 434 .
  • Bailey , CD , Carr , TG , Harris , SA and Hughes , CE . 2003 . Characterization of angiosperm nrDNA polymorphism, paralogy, and pseudogenes. . Molecular Phylogenetics and Evolution , 29 : 435 – 455 .
  • Chase , MW , Soltis , DE , Olmstead , RG , Morgan , D , Les , DH , Mishler , BD , Duvall , MR , Price , RA , Hills , HG , Qiu , Y‐L , Kron , K , Rettig , J , Conti , E , Palmer , J , Manhart , J , Sytsma , K , Michaels , H , Kress , WJ , Donoghue , M , Clark , WD , Hedren , M , Gaut , B , Jansen , R , Kim , K‐J , Wimpee , C , Smith , J , Furnier , G , Straus , S , Xiang , Q‐Y , Plunkett , G , Soltis , P , Swensen , S , Eguiarte , L , Learn , G , Barrett , S , Graham , S , Dayanandan , S and Albert , V . 1993 . Phylogenetics of seed plants ‐ an analysis of nucleotide sequences from the plastid gene rbcL. . Annals of the Missouri Botanical Garden , 80 : 528 – 580 .
  • Doyle , JJ and Doyle , JL . 1987 . A rapid isolation procedure from small quantities of fresh leaf tissue. . Phytochemical Bulletin , 19 : 11 – 15 .
  • Garnock‐Jones , PJ . 1991 . Seed morphology and anatomy of the New Zealand genera Cheesemania, Ischnocarpus, Iti, Notothlaspi, and Pachycladon (Brassicaceae). . New Zealand Journal of Botany , 29 : 71 – 82 .
  • Hall , AE , Fiebig , A and Preuss , D . 2002 . Beyond the Arabidopsis genome: opportunities for comparative genomics. . Plant Physiology , 129 : 1439 – 1447 .
  • Heenan , PB . 1999 . Artificial intergeneric hybrids between the New Zealand endemic Ischnocarpus and Pachycladon (Brassicaceae). . New Zealand Journal of Botany , 37 : 595 – 601 .
  • Heenan , PB and Garnock‐Jones , PJ . 1999 . A new species combination in Cheesemania (Brassicaceae) from New Zealand. . New Zealand Journal of Botany , 37 : 235 – 241 .
  • Heenan , PB and Mitchell , AD . 2003 . Phylogeny, biogeography, and adaptive radiation of Pachycladon (Brassicaceae) in the mountains of South Island, New Zealand. . Journal of Biogeography , 30 : 1737 – 1749 .
  • Heenan , PB , Mitchell , AD and Koch , M . 2002 . Molecular systematics of the New Zealand Pachycladon (Brassicaceae) complex: generic circumscription and relationships to Arabidopsis sens. lat. and Arabis sens. lat. . New Zealand Journal of Botany , 40 : 543 – 562 .
  • Huson , DH and Bryant , D . 2006 . Application of phylogenetic networks in evolutionary studies. . Molecular Biology and Evolution , 23 : 254 – 267 .
  • Koch , M , Al‐Shehbaz , IA and Mummenhoff , K . 2003 . Molecular systematics, evolution, and population biology in the mustard family (Brassicaceae). . Annals of the Missouri Botanical Garden , 90 : 151 – 171 .
  • Le Corre , V , Roux , F and Reboud , X . 2002 . DNA polymorphism at the FRIGIDA gene in Arabidopsis thaliana: Extensive nonsynonymous variation is consistent with local selection for flowering time. . Molecular Biology and Evolution , 19 : 1261 – 1271 .
  • Lukowitz , W , Gillmore , CS and Scheible , W‐R . 2000 . Positional cloning in Arabidopsis. Why it feels good to have a genome initiative working for you. . Plant Physiology , 123 : 795 – 806 .
  • Luo , C , Bicknell , RA and Heenan , PB . 2003 . Embryology of two threatened species of Pachycladon (Brassicaceae). . New Zealand Journal of Botany , 41 : 171 – 178 .
  • Maddison , DR and Maddison , WP . 2003 . MacClade 4: Analysis of phylogeny and character evolution , Sunderland, Massachusetts : Sinauer Associates .
  • Manjunath , S and Sachs , MM . 1997 . Molecular characterization and promoter analysis of the maize cytosolic glyceraldehyde 3‐phosphate dehydrogenase gene family and its expression during anoxia. . Plant Molecular Biology , 33 : 97 – 112 .
  • Miller , AL and Duncan , RP . 2004 . The impact of exotic weed competition on a rare New Zealand outcrop herb, Pachycladon cheesemanii (Brassicaceae). . New Zealand Journal of Ecology , 28 : 113 – 124 .
  • Mitchell , AD and Heenan , PB . 2000 . Systematic relationships of New Zealand endemic Brassicaceae inferred from nrDNA sequence data. . Systematic Botany , 25 : 98 – 105 .
  • Mitchell , AD and Heenan , PB . 2002 . Genetic variation within the Pachycladon (Brassicaceae) complex based on fluorescent AFLP data. . Journal of the Royal Society of New Zealand , 32 : 427 – 443 .
  • Mitchell‐Olds , T . 2001 . Arabidopsis thaliana and its wild relatives: a model system for ecology and evolution. . Trends in Ecology and Evolution , 16 : 693 – 700 .
  • Molloy , BPJ , Edgar , E , Heenan , PB and de Lange , PJ . 1999 . New species of Poa (Gramineae) and Ischnocarpus (Brassicaceae) from limestone, North Otago, South Island, New Zealand. . New Zealand Journal of Botany , 37 : 41 – 50 .
  • Mummenhoff , K , Brüggemann , H and Bowman , JL . 2001 . Chloroplast DNA phylogeny and biogeography of Lepidium (Brassicaceae). . American Journal of Botany , 88 : 2051 – 2063 .
  • Pérusse , JR and Schoen , DJ . 2004 . Molecular evolution of the GapC gene family in Amsinckia spectabilis populations that differ in outcrossing rate. . Journal of Molecular Evolution , 59 : 427 – 436 .
  • Strand , AE , Leebens‐Mack , J and Milligan , BG . 1997 . Nuclear DNA‐based markers for plant evolutionary biology. . Molecular Ecology , 6 : 113 – 118 .
  • Taberlet , P , Gielly , L , Pautou , G and Bouvet , J . 1991 . Universal primers for amplification of three non‐coding regions of chloroplast DNA. . Plant Molecular Biology , 17 : 1105 – 1109 .
  • White , TJ , Bruns , T , Lee , S and Taylor , J . 1990 . “ Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. ” . In PCR protocols: a guide to methods and applications , Edited by: Innis , MA , Gelfand , DH , Snisky , JJ and White , TJ . 315 – 322 . San Diego : Academic Press .

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.