References
- Bandelt , H , Forster , P and Röhl , A . 1999 . Median‐joining networks for inferring intraspecific phylogenies . Molecular Biology and Evolution , 16 : 37 – 48 .
- Bunn , S and Hughes , J . 1997 . Dispersal and recruitment in streams: evidence from genetic studies . Journal of the North American Benthological Society , 16 : 338 – 346 .
- Excoffier , L , Smouse , P and Quattro , J . 1992 . Analysis of molecular inference from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data . Genetics , 131 : 479 – 491 .
- Felsenstein , J . 1981 . Evolutionary trees from DNA sequences: a maximum likelihood approach . Journal of Molecular Evolution , 17 : 368 – 376 .
- Freeland , J , May , M , Lodge , R and Conrad , K . 2003 . Genetic diversity and widespread haplotypes in a migratory dragonfly, the common green darner Anaxjunius . Ecological Entomology , 28 : 413 – 421 .
- Gleeson , D , Howitt , R and Ling , N . 1999 . Genetic variation, population structure and cryptic species within the black mudfish Neochanna diversus an endemic galaxiid from New Zealand . Molecular Ecology , 8 : 47 – 57 .
- Hall , T . 1999 . Bioedit: a user friendly biological sequence alignment editor and analysis programme for Windows 95/98/NT . Nucleic Acids Symposium Service , 41 : 95 – 98 .
- Hewitt , G . 2000 . The genetic legacy of the Quaternary ice ages . Nature , 405 : 907 – 913 .
- Hogg , I , Willmann‐Huerner , P and Stevens , M . 2002 . Population genetic structures of two New Zealand stream insects: Achichauliodes diversus (Megaloptera) and Coloburiscus humeralis (Ephemeroptera) . New Zealand Journal of Marine and Freshwater Research , 36 : 491 – 501 .
- Hughes , J , Bunn , S , Hurwood , D and Cleary , C . 1998 . Dispersal and recruitment of Tasiagma ciliata (Trichoptera: Tasimiidae) in rainforest streams, south‐eastern Australia . Freshwater Biology , 39 : 117 – 127 .
- Hughes , J , Mather , P , Sheldon , A and Allendorf , F . 1999 . Genetic structure of the stonefly, Yoraperla brevis, populations: the extent of gene flow among adjacent montane streams . Freshwater Biology , 41 : 63 – 72 .
- Hughes , J , Bunn , S , Cleary , C and Hurwood , D . 2000 . An hierarchical analysis of the genetic structure of an aquatic insect Bungona (Baetidae: Ephemeroptera) . Heredity , 85 : 561 – 570 .
- Kumar , S , Tamura , K , Jakobsen , I and Nei , M . 2001 . MEGA2: Molecular evolutionary genetics analysis software. Version 2.01 , Tempe, Arizona, , United States : Arizona State University .
- Lloyd , BD . 2003 . Intraspecific phylogeny of the New Zealand short‐tailed bat Mystacina tuberculata inferred from multiple mitochondrial gene sequences . Systematic Biology , 52 : 460 – 476 .
- McCraw , J . Water in the development of a region . Proceedings of a symposium held in conjunction with the NZ Institute of Engineers Annual Conference . Hamilton. The geological history of the Waikato River and its catchment , pp. 9
- McDowall , R . 1995 . Effects of Taupo eruption endure in fish distributions . Water & Atmosphere , 3 : 22 – 23 .
- McElroy , D , Moran , P , Bermingham , E and Kornfield , I . 1992 . REAP: an integrated environment for the manipulation and phylogenetic analysis of restriction data . Journal of Heredity , 83 : 157 – 158 .
- McGlone , M . 1985 . Plant biogeography and the late Cenozoic history of New Zealand . New Zealand Journal of Botany , 23 : 723 – 749 .
- Miller , M , Blinn , M and Keim , P . 2002 . Correlations between observed dispersal capabilities and patterns of genetic differentiation in populations of four aquatic insect species from the Arizona White Mountains . Freshwater Biology , 47 : 1660 – 1673 .
- Monaghan , T , Spaak , P , Robinson , C and Ward , J . 2001 . Genetic differentiation of Baetis alpinus Pichet (Ephemeroptera: Baetidae) in fragmented alpine streams . Heredity , 86 : 395 – 403 .
- Monaghan , T , Spaak , P , Robinson , C and Ward , J . 2002 . Population genetic structure of 3 alpine stream insects: influences of gene flow, demographics, and habitat fragmentation . Journal of the North American Benthological Society , 21 : 114 – 131 .
- Moritz , C , Dowling , T and Brown , W . 1987 . Evolution of animal mitochondrial DNA: relevance for population biology and systematics . Annual Review of Ecology and Systematics , 18 : 269 – 292 .
- Nei , M . 1987 . Molecular evolutionary genetics , 512 New York : Columbia University Press .
- Posada , D and Crandall , K . 1998 . MODELTEST: testing the model of DNA substitution . Bioinformatics , 14 : 817 – 818 .
- Reineke , A , Karlovsky , P and Zebitz , P . 1998 . Preparation and purification of DNA from insects for AFLP analysis . Insect Molecular Biology , 7 : 95 – 99 .
- Reiss , R , Ashworth , A and Schwert , D . 1999 . Molecular genetic evidence for the post‐Pleistocene divergence of populations of the arctic‐alpine ground beetle Amara alpina (Paykull) . Journal of Biogeography , 26 : 785 – 794 .
- Rice , W . 1989 . Analysing tables of statistical tests . Evolution , 43 : 223 – 225 .
- Roff , D and Bentzen , P . 1989 . The statistical analysis of mitochondrial DNA polymorphisms: c2 and the problem of small samples . Molecular Biology and Evolution , 6 : 539 – 545 .
- Schmidt , S , Hughes , J and Bunn , S . 1995 . Gene flow among conspecific populations of Baetis sp. (Ephemeroptera): adult flight and larval drift . Journal of the North American Benthological Society , 14 : 147 – 157 .
- Schneider , S , Roessli , D and Excoffier , L . 2000 . Arlequin ver. 2.000: a software for population genetics data analysis , Switzerland : Genetics and Biometry Laboratory, University of Geneva .
- Schultheis , A , Weigt , L and Hendricks , A . 2002 . Gene flow, dispersal, and nested clade analysis among populations of the stonefly Peltoperla tarteri in the southern Appalachians . Molecular Ecology , 11 : 317 – 327 .
- Simon , C , Frati , F , Beckenbach , A , Crespi , B , Liu , H and Flook , P . 1994 . Evolution, weighting, and phylogenetic utility of mitochondrial gene sequences and a compilation of conserved polymerase chain reaction primers . Annals of the Entomological Society of America , 87 : 653 – 700 .
- Smith , P and Collier , K . 2001 . Allozyme diversity and population structure of the caddisfly Orthopsyche fimbriata and the mayfly Acanthophlebia cruentata in New Zealand streams . Freshwater Biology , 46 : 795 – 805 .
- Smith , P , Collier , K and McVeagh , S . 2005 . Genetic diversity and historical population structure in the New Zealand mayfly Acanthophlebia cruentata . Freshwater Biology , 51 : 12 – 24 .
- Stevens , G . 1980 . New Zealand Adrift , 442 Wellington : Reed .
- Taggart , J , Hynes , R , Prodohl , P and Ferguson , A . 1992 . A simplified protocol for routine total DNA isolation from salmonid fishes . Journal of Fish Biology , 40 : 963 – 965 .
- Wilcock , H , Hildrew , A and Nichols , R . 2001 . Genetic differentiation of a European caddisfly: past and present gene flow among fragmented larval habitats . Molecular Ecology , 10 : 1821 – 1834 .
- Winterbourn , M , Gregson , K and Dolphin , C . 2000 . Guide to the aquatic insects of New Zealand . Bulletin of the Entomological Society of New Zealand , 13 : 102
- Wishart , M and Hughes , J . 2003 . Genetic population structure of the net‐winged midge, Elporia barnardi (Diptera: Blephariceridae) in streams of the south‐western Cape, South Africa: implications for dispersal . Freshwater Biology , 48 : 28 – 38 .
- Wright , S . 1951 . The genetical structure of populations . Annals of Eugenics , 15 : 323 – 354 .