Mapping of aetiologies of gastroenteritis: a systematic review and meta-analysis of pathogens identified using a multiplex screening array

References

• Hall AJ, Rosenthal M, Gregoricus N, et al. Incidence of acute gastroenteritis and role of norovirus, Georgia, USA, 2004–2005. Emerg Infect Dis. 2011;17(8):1381–1388.
   PubMed Web of Science ®Google Scholar
• Jones TF, McMillian MB, Scallan E, et al. A population-based estimate of the substantial burden of diarrhoeal disease in the United States; FoodNet, 1996–2003. Epidemiol Infect. 2007;135(2):293–301.
   PubMed Web of Science ®Google Scholar
• Thapar N, Sanderson IR. Diarrhoea in children: an interface between developing and developed countries. Lancet. 2004;363(9409):641–653.
   PubMed Web of Science ®Google Scholar
• Kirk MD, Pires SM, Black RE, et al. World Health Organization estimates of the global and regional disease burden of 22 foodborne bacterial, protozoal, and viral diseases, 2010: a data synthesis. PLoS Med. 2015;12(12):e1001921.
   PubMed Web of Science ®Google Scholar
• Liu L, Johnson HL, Cousens S, et al. Global, regional, and national causes of child mortality: an updated systematic analysis for 2010 with time trends since 2000. Lancet. 2012;379(9832):2151–2161.
   PubMed Web of Science ®Google Scholar
• Riddle MS, DuPont HL, Connor BA. ACG clinical guideline: diagnosis, treatment, and prevention of acute diarrheal infections in adults. Am J Gastroenterol. 2016;111(5):602–622.
   PubMed Web of Science ®Google Scholar
• Slutsker L, Ries AA, Greene KD, et al. Escherichia coli O157:H7 diarrhea in the United States: clinical and epidemiologic features. Ann Intern Med. 1997;126(7):505–513.
   PubMed Web of Science ®Google Scholar
• Amrud K, Slinger R, Sant N, et al. A comparison of the Allplex™ bacterial and viral assays to conventional methods for detection of gastroenteritis agents. BMC Res Notes. 2018;11(1):514.
   PubMedGoogle Scholar
• Moher D, Liberati A, Tetzlaff J, et al. Preferred reporting items for systematic reviews and meta-analyses: the PRISMA statement. J Clin Epidemiol. 2009;62(10):1006–1012.
   PubMed Web of Science ®Google Scholar
• Valenzuela C, Legarraga P, Pena A, et al. Etiologic and clinical characterization of community acquired gastroenteritis in adult patients in a Chilean emergency room by the FilmArray GI panel. PLoS One. 2018;13(11):e0207850.
   PubMed Web of Science ®Google Scholar
• Spina A, Kerr KG, Cormican M, et al. Spectrum of enteropathogens detected by the FilmArray GI Panel in a multicentre study of community-acquired gastroenteritis. Clin Microbiol Infect. 2015;21(8):719–728.
   PubMed Web of Science ®Google Scholar
• Calderaro A, Martinelli M, Buttrini M, et al. Contribution of the FilmArray® gastrointestinal panel in the laboratory diagnosis of gastroenteritis in a cohort of children: a two-year prospective study. Int J Med Microbiol. 2018;308(5):514–521.
   PubMed Web of Science ®Google Scholar
• Connor BA, Rogova M, Whyte O. Use of a multiplex DNA extraction PCR in the identification of pathogens in travelers’ diarrhea. J Travel Med. 2018;25.
   Google Scholar
• Buss SN, Leber A, Chapin K, et al. Multicenter evaluation of the BioFire FilmArray gastrointestinal panel for etiologic diagnosis of infectious gastroenteritis. J Clin Microbiol. 2015;53(3):915–925.
   PubMed Web of Science ®Google Scholar
• Keske S, Zabun B, Aksoy K, et al. Rapid molecular detection of gastrointestinal pathogens and its role in antimicrobial stewardship. J Clin Microbiol. 2018;56(5):e00148-18.
   PubMed Web of Science ®Google Scholar
• Axelrad JE, Freedberg DE, Whittier S, et al. Impact of gastrointestinal panel implementation on health care utilization and outcomes. J Clin Microbiol. 2019;57(3):e01775-18.
   PubMed Web of Science ®Google Scholar
• Khare R, Espy MJ, Cebelinski E, et al. Comparative evaluation of two commercial multiplex panels for detection of gastrointestinal pathogens by use of clinical stool specimens. J Clin Microbiol. 2014;52(10):3667–3673.
   PubMed Web of Science ®Google Scholar
• Beal SG, Tremblay EE, Toffel S, et al. A gastrointestinal PCR panel improves clinical management and lowers health care costs. J Clin Microbiol. 2017;56(1):e01457-17.
   PubMed Web of Science ®Google Scholar
• Cybulski RJ Jr., Bateman AC, Bourassa L, et al. Clinical impact of a multiplex gastrointestinal polymerase chain reaction panel in patients with acute gastroenteritis. Clin Infect Dis. 2018;67(11):1688–1696.
   PubMed Web of Science ®Google Scholar
• Pouletty M, De Pontual L, Lopez M, et al. Multiplex PCR reveals a high prevalence of multiple pathogens in traveller’s diarrhoea in children. Arch Dis Child. 2019;104(2):141–146.
   PubMed Web of Science ®Google Scholar
• Piralla A, Lunghi G, Ardissino G, et al. FilmArray GI panel performance for the diagnosis of acute gastroenteritis or hemorrhagic diarrhea. BMC Microbiol. 2017;17(1):111.
   PubMed Web of Science ®Google Scholar
• Leli C, Di Matteo L, Gotta F, et al. Evaluation of a multiplex gastrointestinal PCR panel for the aetiological diagnosis of infectious diarrhoea. Infect Dis (Lond). 2020;52(2):114–120.
   PubMed Web of Science ®Google Scholar
• Stockmann C, Rogatcheva M, Harrel B, et al. How well does physician selection of microbiologic tests identify Clostridium difficile and other pathogens in paediatric diarrhoea? Insights using multiplex PCR-based detection. Clin Microbiol Infect. 2015;21:179e9.
   Web of Science ®Google Scholar
• Crobach MJ, Planche T, Eckert C, et al. European Society of Clinical Microbiology and Infectious Diseases: update of the diagnostic guidance document for Clostridium difficile infection. Clin Microbiol Infect. 2016;22(Suppl. 4):S63–S81.
   PubMed Web of Science ®Google Scholar
• Hebbelstrup Jensen B, Stensvold CR, Struve C, et al. Enteroaggregative Escherichia coli in daycare—a 1-year dynamic cohort study. Front Cell Infect Microbiol. 2016;6:75.
   PubMed Web of Science ®Google Scholar