4,358
Views
160
CrossRef citations to date
0
Altmetric
Original Articles

Isolation and characterization of endophytic bacteria from wild and traditionally cultivated rice varieties

, , , , , , & show all
Pages 617-629 | Received 06 Jan 2000, Accepted 17 Apr 2000, Published online: 04 Jan 2012

References

  • Andro , T. , Chambost , J.P. , Kotoujansky , A. , Cattaneo , J. , Bertheau , Y. , Barras , F. , Van Gijsegem , F. and Coleno , A. 1984 . Mutants of Erwinia chrysanthemi defective in secretion of pectinase and cellulase . J. Bacteriol. , 160 : 1199 – 1203 .
  • Baldani , V.L.D. and Dobereiner , J. 1980 . Host-plant specificity in the infection of cereals with Azosprillum spp . Soil Biol. Biochem. , 12 : 433 – 439 .
  • Barraquio , W.L. , Revilla , L. and Ladha , J.K. 1997 . Isolation of endophytic diazotrophic bacteria from wetland rice . Plant Soil , 194 : 15 – 24 .
  • Boddey , R.M. , de Oliveira , O.C. , Urquiaga , S. , Reis , V.M. , de Olivares , F.L. , Baldani , V.L.D. and Dobereiner , J. 1995 . Biological nitrogen fixation associated with sugar cane and rice: Contributions and prospects for improvement . Plant Soil , 174 : 195 – 209 .
  • Chanprame , S. , Todd , J.J. and Widholm , J.M. 1996 . Prevention of pink-pigmented methylotrophic bacteria (Methylobacterium mesophilicum) contamination of plant tissue culture . Plant Cell Rep. , 16 : 222 – 225 .
  • Chen , C. , Bauske , E.M. , Mussan , G. , Rodriguez-Kabana , R. and Kloepper , J.W. 1995 . Biological control of Fusarium wilt on cotton by use of endophytic bacteria . Biol. Control , 5 : 83 – 91 .
  • Cowan , S.T. and Steel , K.J. 1974 . Cowan and Steel's Manual for Identification of Medical Bacteria , Cambridge : Cambridge University Press .
  • Dunleavy , J.M. 1989 . Curtobacterium plantarum sp. nov. is ubiquitous in plant leaves and is seed transmitted in soybean and corn . Int. J. Syst. Bacterio!. , 39 : 240 – 249 .
  • Frommel , M.J. , Nowak , J. and Lazarovits , G. 1993 . Treatment of potato tubers with a growth promoting Pseudomonas sp.: Plant growth responses and bacterium distribution in the rhizosphere . Plant Soil , 150 : 51 – 60 .
  • Fujii , T. , Huang , Y.D. , Higashitani , A. , Nishimura , Y. , Iyama , S. , Hirota , Y. , Yoneyama , Y. and Dixon , R.A. 1987 . Effect of inoculation with Klebsiella oxytoca and Enterobacter cloacea on dinitrogen fixation by rice-bacteria associations . Plant Soil , 103 : 221 – 226 .
  • Green , P. 1992 . “ The genus Methylobacterium ” . In The Prokaryotes , Edited by: Balows , A. , Truper , H.G. , Dworkin , M. , Harder , W. and Schleifer , K.H. 2342 – 2349 . Berlin : Springer-Verlag . In
  • Hallmann , J. , Quadt-Hallmann , A. , Mahaffee , W.F. and Kleopper , J.W. 1997 . Bacterial endophytes in agricultural crops . Can. J. Microbiol. , 43 : 895 – 914 .
  • Hayashi , H. and Chino , M. 1990 . Chemical composition of phloem sap from the uppermost internode of the rice plant . Plant Cell Physiol. , 31 : 247 – 251 .
  • Hiraishi , A. 1992 . Direct automated sequencing of 16S rDNA amplified by polymerase chain reaction from bacterial culture without DNA purification . Lett. Appl. Microbiol. , 15 : 210 – 213 .
  • Hiraishi , A. , Furuhata , K. , Matsumoto , A. , Koike , K.A. , Fukuyama , M. and Tabuchi , K. 1995 . Phenotypic and genetic diversity of chlorine-resistant Methylobacterium strains isolated from various environments . Appl. Environ. Microbial. , 61 : 2099 – 2107 .
  • Hirota , Y. , Fujii , T. , Sano , T. and Iyama , S. 1978 . Nitrogen fixation in the rhizosphere of rice . Nature , 276 : 416 – 417 .
  • Hurek , T. , Reinhold-Hurek , B. , van Montagu , M. and Kellenberger , E. 1994 . Root colonization and systemic spreading of Azoarcus sp. strain BH72 in grasses . J. Bacteriol , 176 : 1913 – 1923 .
  • Ito , H. and Iizuka , H. 1971 . Taxonomic studies on a radio-resistant Pseudomonas. Part XII. Studies on the microorganisms of cereal grain . Agric. Biol. Chem. , 35 : 1566 – 1577 .
  • Katupitiya , S. , Millet , J. , Vesk , M. , Viccars , L. , Zeman , A. , Lidong , Z. , Elmerich , C. and Kennedy , I.R. 1995 . A mutant of Azospirillum brasilense Sp7 impaired in flocculation with a modified colonization pattern and superior nitrogen fixation in association with wheat . Appl. Environ. Microbiol. , 61 : 1987 – 1995 .
  • Kirchhof , G. , Reis , V.M. , Baldani , J.I. , Eckert , B. , Dobereiner , J. and Hartmann , A. 1997 . Occurrence, physiological and molecular analysis of endophytic diazotrophic bacteria in gramineous energy plants . Plant Soil , 194 : 45 – 55 .
  • Komagata , K. and Suzuki , K. 1986 . “ Genus Curtobacterium ” . In Bergey's Manual of Systematic Bacteriology , Edited by: Sneath , P.H.A. , Mair , N.S. , Sharpe , M.E. and Holt , J.G. 1313 – 1317 . Baltimore : Williams & Wilkins . In
  • Ladha , J.K. , Barraquio , W.L. and Watanabe , I. 1983 . Isolation and identification of nitrogen-fixing Enterobacter cloacae and Klebsiella panticola associated with rice plants . Can. J. Microbiol. , 29 : 1301 – 1308 .
  • Lane , D.J. 1991 . “ 16S/23S rRNA sequencing ” . In In Nucleic Acid Techniques in Bacterial Systematics , Edited by: Stackebrandt , E. and Goodfellow , M. 115 – 175 . Chichester : John Wiley and Sons . In
  • Liu , L. , Kloepper , J.W. and Tuzun , S. 1995 . Induction of systemic resistance in cucumber against Fusarium wilt by plant growth-promoting rhizobacteria . Phytopathology , 85 : 695 – 698 .
  • Lu , J.J. and Chang , T. 1980 . “ Rice in its temporal and spatial perspectives ” . In Rice: Production and Utilization , Edited by: Luh , B.S. 1 – 74 . Westport : Avi Publishing . In
  • McInroy , J.A. and Kloepper , J.W. 1995 . Survey of indigenous bacterial endophytes from cotton and sweet corn . Plant Soil , 173 : 337 – 342 .
  • Minamisawa , K. , Seki , T. , Onodera , S. , Kubota , M. and Asami , T. 1992 . Genetic relatedness of Bradyrhizobium japonicum field isolates as revealed by repeated sequences and various other characteristics . Appl. Environ. Microbiol. , 58 : 2832 – 2839 .
  • Olivares , F.L. , Balandi , V.L.D. , Reis , V.M. , Baldani , J.I. and Dobereiner , J. 1996 . Occurrence of the endophytic diazotrophic Herbaspirillum spp. in roots, stem, and leaves, predominantly of Gramineae . Biol. Ferril. Soils , 21 : 197 – 200 .
  • Patt , T.E. , Cole , G.c. and Hanson , R.S. 1976 . Methylobacterium, a new genus of facultatively methylotrophic bacteria . Int. J. Syst. Bacteriol. , 26 : 226 – 229 .
  • Plazinski , J. and Rolfe , G.B. 1985 . Analysis of proteolytic activity of Rhizobium and Azospirillum strains isolated from Trifoliu repens . J. Plant Physiol , 120 : 181 – 187 .
  • Quadt-Hallmann , A. , Benhamou , N. and Kloepper , J.W. 1997 . Bacterial endophytes in cotton: Mechanisms of entering the plant . Can. J. Microbiol. , 43 : 577 – 582 .
  • Reinhold-Hurek , B. and Hurek , T. 1998 . Life in grasses: Diazotrophic endophytes . Trend Microbiol. , 6 : 139 – 144 .
  • Rennie , R.J. 1981 . A single medium for the isolation of acetylene-reducing (dinitrogen fixing) bacteria from soils . Can. J. Microbiol. , 27 : 8 – 14 .
  • Saito , N. and Nei , M. 1987 . The neighbor-joining method: A new method for reconstructing phylogenetic trees . Mol. Biol. Evol. , 4 : 406 – 425 .
  • Sato , Y.I. 1994 . Ecological-genetic studies on wild and cultivated rice in tropical Asia . Tropics , 3 : 189 – 245 .
  • Stoltzfus , J.R. , So , R. , Malarvithi , P.P. , Ladha , J.K. and deBruijn , F.J. 1997 . Isolation of endophytic bacteria from rice and assessment of their potential for supplying rice with biologically fixed nitrogen . Plant Soil , 194 : 25 – 36 .
  • Sturz , A.V. , Christie , B.R. , Matheson , B.G. and Nowak , J. 1997 . Biodiversity of endophytic bacteria which colonize red clover nodules, roots, stems and foliage and their influence on host growth . Biol. Fertil. Soils , 25 : 13 – 19 .
  • Sturz , A.V. and Matheson , B.G. 1996 . Populations of endophytic bacteria which influence host-resistance to Erwinia-induced bacterial soft rot in potato tubers . Plant Soil , 184 : 265 – 271 .
  • Tor , M. , Mantell , S.H. and Ainsworth , C. 1992 . Endophytic bacteria expressing β-glucuronidase cause false positives in transformation of Dioscorea species . Plant Cell Rep. , 11 : 452 – 456 .
  • Urakami , T. and Komagata , K. 1984 . Protomonas, a new genus of facultatively methylotrophic bacteria . Int. J. Syst. Bacteriol. , 34 : 188 – 201 .
  • Yamazaki , Y. 1997 . Rice Genetic Resources in Japan , 703 – 703 . Mishima : National Institute of Genetics .
  • Yasuta , T. , Satoh , S. and Minamisawa , K. 1999 . New assay for rhizobitoxine based on inhibition of 1-aminocyclopropane-l-carboxylate synthase . Appl. Environ. Microbiol. , 65 : 849 – 852 .
  • You , C. and Zhou , F. 1989 . Non-nodular endorhizospheric nitrogen fixation in wetland rice . Can. J. Microbiol. , 35 : 403 – 408 .

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.