110
Views
8
CrossRef citations to date
0
Altmetric
Original Articles

Phospholipid fatty acid composition of microbiota in the percolating water from a rice paddy microcosm

, , &
Pages 533-545 | Received 31 Jan 2001, Accepted 25 Jun 2001, Published online: 04 Jan 2012

References

  • Amann , R.I. , Ludwig , W. and Schleifer , K.-H. 1995 . Phylogenetic identification and in situ detection of individual microbial cells without cultivation . Microbiol. Rev. , 59 : 143 – 169 .
  • Aoki, S. 1996: http://aoki2.si.gunma-u.ac.jp/BlackBox/BlackBox.html
  • Arao , T. , Okano , S. and Kanamori , T. 1998 . Analysis of the phospholipid fatty acids of upland light colored Andosol and the relationship among the size of biomass based on phospholipid fatty acid analysis, microscopical counts and chloroform fumigation-incubation . Jpn. J. Soil Sci. Plant Nutr. , 69 : 38 – 46 . (in Japanese with English summary)
  • Bai , Q. , Gattinger , A. and Zelles , L. 2000 . Characterization of microbial consortia in paddy rice soil by phospholipid analysis . Microb. Ecol. , 39 : 273 – 281 .
  • Bligh , E.G. and Dyer , W.J. 1959 . A rapid method of total lipid extraction and purification . Can. J. BioChem. Physiol. , 37 : 911 – 917 .
  • Bossio , D.A and Scow , K.M. 1998 . Impacts of carbon and flooding on soil microbial communities: Phospholipid fatty acid profiles and substrate utilization patterns . Microb. Ecol. , 35 : 265 – 278 .
  • Guckert , J.B. , Hood , M.A. and White , D.C. 1986 . Phospholipid ester-linked fatty acid profile changes during nutrient deprivation of Vibrio cholerae: Increases in the trans/cis ratio and proportion of cyclopropyl fatty acids . Appl. Environ. Microbiol. , 52 : 794 – 801 .
  • Haack , S.K. , Garchow , H. , Odelson , D.A. , Forney , L.J. and Klug , M.J. 1994 . Accuracy, reproducibility, and interpretation of fatty acid methyl ester profiles of model bacterial communities . Appl. Environ. Microbiol. , 60 : 2483 – 2493 .
  • Kimura , M. , Wada , H. and Takai , Y. 1979 . The studies on the rhizosphere of paddy rice VI. The effects of anaerobiosis on microbes . Soil Sci. Plant Nutr. , 25 : 145 – 153 .
  • Kimura , M. , Yamashita , T. and Ikka , T. 1997 . Bacterial numbers and biomass in leachate and in subsoil of a submerged paddy field . Soil Sci. Plant Nutr. , 43 : 575 – 585 .
  • Kobo , K. , Takai , Y. , Wada , H. and Kagawa , H. 1970 . Effects of percolation on the chemical and bacteriological condition of waterlogged paddy soil (Part 1). Oxidation-reduction potential . J. Sci. Soil Manure , Jpn. : 41, 438 – 444 . (in Japanese)
  • Kondo , H. , Fuzisawa , Y. and Takai , Y. 1982 . Studies on the microbial ecology of paddy soils under water percolation (Part 4). The effect of water percolated from the plow layer on the microflora of subsurface layer . Jpn. J. Soil Sci. Plant Nutr. , 53 : 415 – 419 . (in Japanese)
  • Kroppenstedt , R.M. 1992 . “ The genus Nocardiopsis ” . In The Procaryotes , Edited by: Balows , A. , Trüper , H.G. , Dworkin , M. , Harder , W. and Schleifer , K.H. Vol. 2 , 1139 – 1156 . Berlin : Springer .
  • Lochhead , A.G. 1940 . Qualitative studies of soil micro-organisms. III. Influence of plant growth on the character of the bacterial flora . Can. J. Res. , 18 : 42 – 53 .
  • Maie , N. , Watanabe , A. and Kimura , M. 1997 . Origin and properties of humus in the subsoil of irrigated rice paddies. I. Leaching of organic matter from plow layer soil and accumulation in subsoil . Soil Sci Plant Nutr. , 43 : 901 – 910 .
  • Okabe , A. , Oike , H. , Toyota , K. and Kimura , M. 2000a . Comparison of phospholipid fatty acid composition in floodwater and plow layer soil during the rice cultivation period in a Japanese paddy field . Soil Sci. Plant Nutr. , 46 : 893 – 904 .
  • Okabe , A. , Toyota , K. and Kimura , M. 2000b . Seasonal variations of phospholipid fatty acid composition in the floodwater of a Japanese paddy field under a long-term fertilizer trial . Soil Sci. Plant Nutr. , 46 : 177 – 188 .
  • Ratledge , C. and Wilkinson , S.G. 1988 . Microbial Lipids , Vol. 1 , 23 – 29 . London : Academic Press . 117-457, 699-794
  • Reichardt , W. , Mascarina , G. , Padre , B. and Doll , L. 1997 . Microbial communities of continuously cropped, irrigated rice fields . Appl. Environ. Microbiol. , 63 : 233 – 238 .
  • Takai , Y. , Kagawa , H. and Kobo , K. 1968 . Movement of bacteria by water percolation in submerged paddy soils (Part 1) . J. Sci. Soil Manure , Jpn. : 39, 219 – 223 . (in Japanese)
  • Wada , H. , Tsuchiya , K. and Takai , Y. 1979 . Leaching of substances from paddy soils (Part 1). Leaching process of common inorganic substances . J. Sci. Soil Manure , Jpn. : 50, 511 – 516 . (in Japanese)
  • White , D.C. , Davis , W.M. , Nickels , J.S. , Kind , J.D. and Bobbie , RJ. 1979 . Determination of the sedimentary microbial biomass by extractable lipid phosphate . Oecologia , 40 : 51 – 62 .
  • Zelles , L. 1999 . Fatty acid patterns of phospholipids and lipopolysaccharides in the characterization of microbial communities in soil: a review . Biol. Fertil Soils , 29 : 111 – 129 .

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.