References
- Abasht, B., F. Pitel, S. Lagarrigue, E. Le Bihan-Duval, P. Le Roy, O. Demeure, F. Vignoles, et al. 2006. “Fatness QTL on Chicken Chromosome 5 and Interaction with Sex.” Genetics, Selection and Evolution 38 (3): 297–311. doi:https://doi.org/10.1186/1297-9686-38-3-297.
- Alatafi, A. K., H. D. Saleem, R. P. Singh, S. Herbert, and V. K. Singh. 2013. “DNA Polymorphism among Three Native Indian Chickens Using RAPD Markers.” Research Opinions in Animal Veterinary Sciences 3 (4): 117–122.
- Alatafi, A. K., and K. Kasturi. 2014. “Estimation of Molecular Diversity between Important Native and Pure Female Asiatic Chickens Using Randomly Amplified Polymorphic DNA (RAPD).” International Journal of Biotechnology Research 4 (4): 19–24.
- Behera, D., C. R. Pradhan, C. R. Behura, L. M. Mohapatra, G. P. Mohanty, K. Behera, D. P. Das, and R. K. Sahu. 2017. “Production Performance of Hansli Chicken in Odisha.” Journal of Entomology and Zoology Study 5 (6): 1219–1224.
- Bhattacharya, T. K., and R. N. Chatterjee. 2014. Tellicherry: An Indigenous Chicken Breed. Rajendranagar, Hyderabad: Published by Directorate of Poultry Research.
- Brown, W. M., E. M. Prager, A. Wang, and A. C. Wilson. 1982. “Mitochondrial DNA Sequences of Primates: Tempo and Mode of Evolution.” Journal of Molecular Evolution 18 (4): 225–239. doi:https://doi.org/10.1007/BF01734101.
- Burt, D. W. 2005. “Chicken Genome: Current Status and Future Opportunities.” Genome Research 15 (12): 1692–1698. doi:https://doi.org/10.1101/gr.4141805.
- Chatterjee, R. N., R. P. Sharma, T. K. Bhattacharya, M. Niranjan, and B. L. N. Reddy. 2010. “Microsatellite Variability and Its Relationship with Growth, Egg Production and Immunocompetence Traits in Chickens.” Biochemical Genetics 48: 71–82. doi:https://doi.org/10.1007/s10528-009-9296-5.
- Chaudhary, D. F., R. S. Joshi, D. N. Rank, and J. D. Chaudhary. 2020. “Microsatellite Based Genetic Characterization Study in Native Chicken Population of North Gujarat, India.” International Journal of Current Microbiology and Applied Science 9 (4): 1562–1569. doi:https://doi.org/10.20546/ijcmas.2020.904.183.
- Clayton, D. A. 1982. “Replication of Animal Mitochondrial DNA.” Cell 28 (4): 693–705. doi:https://doi.org/10.1016/0092-8674(82)90049-6.
- Clayton, D. A. 1992. “Transcription and Replication of Animal Mitochondrial DNAs.” International Review of Cytology 141: 217–232. doi:https://doi.org/10.1016/s0074-7696(08)62067-7.
- DADF. 2019. Basic Animal Husbandry Statistics-2019. New Delhi: Govt. of India. Published by DADF.
- Desjardins, P., and R. Morais. 1990. “Sequence and Gene Organization of the Chicken Mitochondrial Genome: A Novel Gene Order in Higher Vertebrates.” Journal of Molecular Biology 212 (4): 599–634. doi:https://doi.org/10.1016/0022-2836(90)90225-B.
- Di Lorenzo, P., S. Ceccobelli, F. Panella, G. Attard, and E. Lasagna. 2015. “The Role of Mitochondrial DNA to Determine the Origin of Domestic Chicken.” World’s Poultry Science Journal 71 (2): 311–318. doi:https://doi.org/10.1017/S0043933915000318.
- Dushyanth, K., T. K. Bhattacharya, R. Shukla, R. N. Chatterjee, T. Sitaramamma, C. Paswan, and P. Guru Vishnu. 2016. “Gene Expression and Polymorphism of Myostatin Gene and Its Association with Growth Traits in Chicken.” Animal Biotechnology 27 (4): 269–277. doi:https://doi.org/10.1080/10495398.2016.1182541.
- Fadhil, I. A., M. H. Dakheel, and T. H. Hussein. 2016. “Detection of Genetic Diversity through Two Poultry Breeds by Using RAPD-PCR Technique.” Journal of University of Babylon 24 (9): 2661–2668.
- FAO. 2011. “Molecular Genetic Characterization of Animal Genetic Resources.” FAO Animal Production and Health Guidelines. No. 9. Rome.
- Fumihito, A., T. Miyake, S. Sumi, M. Takada, S. Ohno, and N. Kondo. 1994. “One Subspecies of the Red Junglefowl (Gallus Gallus Gallus) Suffices as the Matriarchic Ancestor of All Domestic Breeds.” Proceedings of National Academy of Science (USA) 91 (26): 12505–12509. doi:https://doi.org/10.1073/pnas.91.26.12505.
- Goel, V., and S. Goel. 2016. “Diversity Analysis of Ankleshwar Poultry Breed.” International Journal of Innovations in Applied Sciences &engineering 2 (January–December): 67–98.
- Gupta, A., S. K. Mishra, Y. Prasad, G. Arora, S. O. Pratap, D. P. Singh, and M. C. Kataria. 2010. “Mitochondrial DNA Analysis of Indian Native Breed: Aseel Proves Its Evolution from Red Jungle Fowl Ahead of Modern Commercial Chickens.” XIII European Poultry Conference, 547. Tours, France, 23–27 August. 108_epc2010.
- Guru Vishnu, P. B., T. K. Bhattacharya, P. Kumar, R. N. Chaterjee, G. V. P. P. S. Ravi Kumar, C. Paswan, D. K. Reddy, and A. Rajendra Prasad. 2017. “Expression Profiling of Activin Type IIB Receptor during Ontogeny in Broiler and Indigenous Chicken.” Animal Biotechnology 28 (1): 26–36. doi:https://doi.org/10.1080/10495398.2016.1194287.
- Haunshi, S., A. K. Burramsetty, T. R. Kannaki, and U. Rajkumar. 2019. “Survivability, Immunity, Growth and Production Traits in Indigenous and White Leghorn Breeds of Chicken.” British Poultry Science 60 (6): 683–690. doi:https://doi.org/10.1080/00071668.2019.1639139.
- Haunshi, S., and L. L. L. Prince. 2021. “Kadaknath: A Popular Native Chicken Breed of India with Unique Black Colour Characteristics.” World’s Poultry Science Journal. doi:https://doi.org/10.1080/00439339.2021.1897918.
- ICAR-NBAGR Newsletter. 2017. Published by ICAR-National Bureau of Animal Genetic Resources. Vol. 14, 1, 6. Karnal, Haryana, India.
- Ishlam, M. A., and M. Nishibori. 2012. “Phylogenetic Analysis of Native Chicken from Bangladesh and Neighboring Asian Countries Based on Complete Sequence of Mitochondrial DNA D-loop Region.” Journal of Poultry Science 49: 237–244. doi:https://doi.org/10.2141/jpsa.0120007.
- Ishlam, M. A., S. A. M. Osman, and M. Nishibori. 2019. “Genetic Diversity of Bangladeshi Native Chickens Based on Complete Sequence of Mitochondrial DNA D-loop Region.” British Poultry Science 60 (6): 628–637. doi:https://doi.org/10.1080/00071668.2019.1655708.
- Kanakachari, M., R. N. Chatterjee, U. Rajkumar, S. Haunshi, M. R. Reddy, and T. K. Bhattacharya. 2020. “Indian Red Jungle Fowl Depicts Close Genetic Relationship with Indian Native Chicken Breeds as Evidenced through Whole Mitochondrial Genome Intersection.” BioRxiv. doi:https://doi.org/10.1101/2020.12.29.424655.
- Kannaki, T. R., M. R. Reddy, M. Shanmugam, P. C. Verma, and R. P. Sharma. 2010. “Chicken Toll-like Receptors and Their Role in Immunity.” World Poultry Science Journal 66 (4): 727–738. doi:https://doi.org/10.1017/S0043933910000693.
- Karnati, H. K., S. R. Pasupuleti, R. Kandi, R. B. Undi, I. Sahu, T. R. Kannaki, M. Subbiah, and R. K. Gutti. 2015. “TLR-4 Signalling Pathway: MyD88 Independent Pathway Up-regulation in Chicken Breeds upon LPS Treatment.” Veterinary Research Communication 39 (1): 73–78. doi:https://doi.org/10.1007/s11259-014-9621-2.
- Kumar, R., and S. Kumar. 2011. “Immunocompetence of Aseel Breed of Native Chicken.” Indian Veterinary Journal 88 (8): 23–25.
- Kumar, R., S. Kumar, D. P. Singh, and P. Gaur. 2007. “DNA Polymorphism at IL-2Rγ and IL-15Rα Genes in Aseel Native Chicken.” Journal of Applied Animal Research 32: 107–110. doi:https://doi.org/10.1080/09712119.2007.9706857.
- Meydan, H., C. P. Jang, M. A. Yildiz, and S. Weigend. 2016. “Maternal Origin of Turkish and Iranian Native Chickens Inferred from Mitochondrial DNA D-loop Sequences.” Asian Australasian Journal of Animal Sciences 29 (11): 1547–1554. doi:https://doi.org/10.5713/ajas.15.1060.
- Mindell, D. P. 1997. Avian Molecular Evolution and Systematics, 5. San Diego, California, U S A: Academic Press.
- Mobegi, V. A. 2006. “Genetic Characterization of African Chicken Using Mitochondrial DNA D-loop Sequences.” M.S. thesis, Nairobi, Kenya: University of Nairobi.
- Moore, W. S. 1995. “Inferring Phylogenies from mtDNA Variation: Mitochondrial‐gene Trees versus Nuclear‐gene Trees.” Evolution 49 (4): 718–726. doi:https://doi.org/10.1111/j.1558-5646.1995.tb02308.x.
- Nawab, A., L. An, J. Wu, G. Li, W. Liu, Y. Zhao, Q. Wu, and M. Xiao. 2019. “Chicken Toll-like Receptors and Their Significance in Immune Response and Disease Resistance.” International Review of Immunology 38 (6): 284–306. doi:https://doi.org/10.1080/08830185.2019.1659258.
- Nishibori, M., T. Shimoqiri, T. Hayashi, and H. Yasue. 2005. “Molecular Evidence for Hybridization of Species in the Genus Gallus except for Gallus Varius”. Animal Genetics 36: 367–375. doi:https://doi.org/10.1111/j.1365-2052.2005.01318.x.
- Pandey, A. K., M. S. Tantia, D. Kumar, B. Mishra, P. Chaudhary, and R. K. Vijh. 2002. “Microsatellite Analysis of Three Poultry Breeds of India.” Asian-Australasian Journal of Animal Science 15 (11): 1536–1542. doi:https://doi.org/10.5713/ajas.2002.1536.
- Pandey, A. K., R. Sharma, and S. P. S. Ahlawat. 2005. “Poultry Genetic Resources of India. Aseel.” Published by National Bureau of Animal genetic Resources (NBAGR), Karnal, Haryana, India. Monograph 15. https://nbagr.icar.gov.in/wp-content/uploads/2020/02/ASEEL-POULTRY.pdf
- Pirany, N., M. N. Romanov, S. P. Gampule, G. Devegowda, and D. T. Prasad. 2007. “Microsatellite Analysis of Genetic Diversity in Indian Chicken Populations.” Journal of Poultry Science 44: 19–28. doi:https://doi.org/10.2141/jpsa.44.19.
- Prasad, A. R., N. G. Sagar, R. N. Chatterjee, C. Paswan, S. P. Yadav, and T. K. Bhattacharya. 2019. “Expression Profile of the Myoglobin Gene in Indigenous Native Chicken.” Indian Journal of Animal Research 53 (7): 852–855. doi:https://doi.org/10.18805/ijar.B-3596.
- Prasad, A. R., T. K. Bhattacharya, R. N. Chatterjee, N. G. Sagar, M. Dange, and P. Guru Vishnu. 2018. “Tissue-specific Expression of Troponin C (TNNC1) Gene in Indigenous Native Chicken.” Indian Journal of Animal Sciences 88 (11): 1269–1271.
- Rajkumar, U., B. R. Gupta, and A. R. Reddy. 2008. “Genomic Heterogeneity of Chicken Populations of India.” Asian-Australasian Journal of Animal Science 21: 1710–1720. doi:https://doi.org/10.5713/AJAS.2008.80299.
- Rajkumar, U., B. R. Gupta, N. Ahmed, A. Venktaramaiah, and A. R. Reddy. 2007. “Genetic Variation and Genetic Diversity in Chicken Populations Using Microsatellite Assay.” Indian Journal of Animal Science 77 (11): 1194–1198.
- Rajkumar, U., M. Muthukumar, S. Haunshi, M. Niranjan, M. V. Raju, S. V. Rama Rao, and R. N. Chatterjee. 2016. “Comparative Evaluation of Carcass Traits and Meat Quality in Native Aseel Chickens and Commercial Broilers.” British Poultry Science 57 (3): 339–347. doi:https://doi.org/10.1080/00071668.2016.1162282.
- Ramasamy, K. T., M. R. Reddy, D. N. Raveendranathan, S. Murugesan, R. N. Chatterjee, R. Ullengala, and S. Haunshi. 2010. “Differential Expression of Toll-like Receptor mRNA in White Leghorn and Indigenous Chicken of India.” Veterinary Research Communication 34 (7): 633–639. doi:https://doi.org/10.1007/s11259-010-9431-0.
- Ramasamy, K. T., M. R. Reddy, K. S. Ravindra, and R. N. Chatterjee. 2018. “Chicken Mx Gene Polymorphisms in Indian Native Chicken Breeds and White Leghorn by Real Time Multiplex Allele Specific PCR.” Indian Journal of Animal Research 52 (5): 649–651. doi:https://doi.org/10.18805/ijar.B-3285.
- Ramasamy, K. T., P. Verma, M. R. Reddy, and S. Murugesan. 2011. “Molecular Characterization of Coding Sequence and mRNA Expression Pattern of Toll-like Receptor 15 in Japanese Quail (Coturnix Japonica) and Indigenous Chicken Breeds (Aseel and Kadaknath).” Journal of Poultry Science 48: 168–175. doi:https://doi.org/10.2141/jpsa.011008.
- Rashid, M., P. Manjula, S. Faruque, A. K. F. H. Bhuiyan, D. Seo, J. Alam, J. H. Lee, and M. S. A. Bhuiyan. 2020. “Genetic Diversity and Population Structure of Indigenous Chicken of Bangladesh Using Microsatellite Markers.” Animal Bioscience 33 (11): 1732–1740. doi:https://doi.org/10.5713/ajas.20.0189.
- Romanov, M. N., and S. Weigend. 2001. “Analysis of Genetic Relationships between Various Populations of Domestic and Jungle Fowl Using Microsatellite Markers.” Poultry Science 80 (8): 1057–1063. doi:https://doi.org/10.1093/ps/80.8.1057.
- Sahu, P. K., B. Das, L. Sahoo, S. Senapati, and G. D. Nayak. 2016. “Genetic Relationship and Population Structure of Three Indian Local Chicken Populations as Revealed by mtDNA D-loop.” Mitochondrial DNA 27 (4): 2986–2988. doi:https://doi.org/10.3109/19401736.2015.1060474.
- Saxena, D. P. 2014. “Molecular Characterization of Indian Breed Kadaknath Chicken.” Ph.D Thesis. Salem, Tamilnadu, India: submitted to Vinayaka Mission University.
- Sharma, A. K., J. D. Joshi, R. K. Singh, S. Kumar, and D. Sharma. 2000a. “DNA Fingerprinting Using Synthetic Oligonucleotide Probe in Native and Exotic Chicken Breeds.” Indian Journal of Poultry Science 35 (1): 24–27.
- Sharma, A. K., R. K. Singh, J. S. Kumra, and D. Sharma. 2001. “Genetic Relatedness among Chicken Breeds Using Randomly Amplified Polymorphic DNA (RAPD) Markers.” Indian Journal of Animal Science 71 (10): 941–945.
- Sharma, D., D. P. Singh, and R. V. Singh. 2000b. “Polymorphism in Indigenous Poultry Germplasm Detected through Randomly Amplified Polymorphic DNA.” Journal of Applied Animal Ressearch 18: 115–120. doi:https://doi.org/10.1080/09712119.2000.9706331.
- Soltan, M. E., A. A. Enab, E. M. Abou-Elewa, and S. A. Farrag. 2016. “Genetic Characterization of a Local Egyptian Chicken Strain Norfa Using Microsatellite Markers.” In Proceedings of 9th International Poultry Conference of the Egyptian Poultry Science Association held during November 2016 at Hurghada, Red Sea, Egypt.
- Sreenivas, D., M. G. Prakash, M. Mahender, and R. N. Chatterjee. 2018. “Molecular Genotyping of Some Poultry Populations Using Microsatellite Markers.” Indian Journal of Poultry Science 53 (3): 251–255. doi:https://doi.org/10.5958/0974-8180.2018.00047.8.
- Tantia, M. S., K. Khanna, R. K. Vijh, P. K. Vij, G. Singh, and S. P. S. Ahlawat. 2006. “Chicken Breeds of India.” Leaflet # 37. Karnal, Haryana, India: Ankleshwar. Published by National Bureau of Animal genetic Resources (NBAGR). https://nbagr.icar.gov.in/wp-content/uploads/2020/02/Ankleshwar-Chicken.pdf
- Tantia, M. S., N. Gonai, P. K. Vij, R. K. Vijh, and S. P. S. Ahlawat. 2005a. “Chicken Breeds of India.” Kashmir Favrolla. Karnal, Haryana, India: Published by National Bureau of Animal genetic Resources (NBAGR). Leaflet # 1. https://nbagr.icar.gov.in/wp-content/uploads/2020/02/KashmirFavrolla-Chicken.pdf
- Tantia, M. S., R. K. Vijh, P. K. Vij, and S. P. S. Ahlawat. 2005. “Chicken Breeds of India.” Ghagus. Leaflet # 22. Karnal, Haryana, India:Published by National Bureau of Animal genetic Resources (NBAGR). https://nbagr.icar.gov.in/wp-content/uploads/2020/02/Ghagus-Chicken.pdf
- Tixier-Boichard, M., B. Bed’Hom, and X. Rognon. 2011. “Chicken Domestication: From Archeology to Genomics.” Comptes Rendus Biologies 334: 197–204. doi:https://doi.org/10.1016/j.crvi.2010.12.012.
- Tomar, A., P. K. Shukla, J. Gupta, A. Singh, R. R. Churchil, and D. Sharma. 2007. “Genetic Polymorphism among Red Jungle Fowl and Domesticated Chicken Detected by DNA Markers.” Journal of Applied Animal Research 31 (2): 205–208. doi:https://doi.org/10.1080/09712119.2007.9706665.
- Vij, P. K., M. S. Tantia, K. Anil Kumar, R. K. Vijh, and S. P. S. Ahlawat. 2007. “Chicken Breeds of India.” Tellichery. Leaflet # 42. Karnal, Haryana, India: Published by National Bureau of Animal genetic Resources (NBAGR). https://nbagr.icar.gov.in/wp-content/uploads/2020/02/Tellichery-Chicken.pdf
- Vij, P. K., M. S. Tantia, R. K. Vijh, G. Singh, B. K. Wankhede, and S. Patil. 2007b. “Chicken Breeds of India.” Busra. Leaflet # 62. Karnal, Haryana, India: Published by National Bureau of Animal genetic Resources (NBAGR). https://nbagr.icar.gov.in/wp-content/uploads/2020/02/Busra-Chicken.pdf
- Vij, P. K., M. S. Tantia, R. K. Vijh, N. Nahardeka, and S. P. S. Ahlawat. 2006. “Chicken Breeds of India.” Daothigir. Leaflet # 35. Karnal, Haryana, India: Published by National Bureau of Animal genetic Resources (NBAGR) https://nbagr.icar.gov.in/wp-content/uploads/2020/02/Daothigir-Chicken.pdf
- Vij, P. K., M. S. Tantia, R. K. Vijh, and S. P. S. Ahlawat. 2005. “Chicken Breeds of India.” Danki. Leaflet # 23. Karnal, Haryana, India: Published by National Bureau of Animal genetic Resources (NBAGR). https://nbagr.icar.gov.in/wp-content/uploads/2020/02/Danki-Chicken.pdf
- Vij, P. K., M. S. Tantia, and S. Pan. 2015. “Performance of Harringhata Black Chicken under Field Conditions.” Indian Journal of Animal Science 85 (8): 930–932.
- Vij, P. K., R. K. Vijh, M. S. Tantia, and S. P. S. Ahlawat. 2005. “Chicken Breeds of India.” Punjab Brown. Punjab Brown. Karnal, Haryana, India: Published by National Bureau of Animal genetic Resources (NBAGR). https://nbagr.icar.gov.in/wp-content/uploads/2020/02/PunjabBrown-Chicken.pdf
- Vij, P. K., T. R. Singh, P. Sharma, R. Sharma, R. K. Vijh, and M. S. Tantia. 2016. “Kaunayen Chicken of Manipur.” Publication No. 96/2016. Karnal, Haryana, India: Published by National Bureau of Animal genetic Resources (NBAGR).
- Vij, P.K., M.S. Tantia, K. Anil Kumar, R.K. Vijh, and S.P.S. Ahlawat. 2007a. Chicken breeds of India. Tellichery. Published by National Bureau of Animal genetic Resources (NBAGR), Karnal, Haryana, India. Leaflet # 42, 2007. (https://nbagr.icar.gov.in/wp-content/uploads/2020/02/Tellichery-Chicken.pdf)
- Vij, P.K., M.S. Tantia, R.K. Vijh, G. Singh, B.K. Wankhede, and S. Patil. 2007b. Chicken breeds of India. Busra. Published by National Bureau of Animal genetic Resources (NBAGR), Karnal, Haryana, India. Published by National Bureau of Animal genetic Resources (NBAGR), 2007b. (https://nbagr.icar.gov.in/wp-content/uploads/2020/02/Busra-Chicken.pdf)
- Vijh, R. K., P. K. Vij, M. S. Tantia, and S. P. S. Ahlawat. 2005. “Chicken Breeds of India.” Kalasthi. Leaflet # 21. Karnal, Haryana, India: Published by National Bureau of Animal genetic Resources (NBAGR). https://nbagr.icar.gov.in/wp-content/uploads/2020/02/Kalasthi-Chicken.pdf
- Vijh, R. K., R. N. Chatterjee, P. K. Vij, M. S. Tantia, and S. P. S. Ahlawat. 2006. Chicken Breeds of India. Vol. 36. Leaflet #. Nicobari, Karnal, Haryana, India: Published by National Bureau of Animal genetic Resources (NBAGR). https://nbagr.icar.gov.in/wp-content/uploads/2020/02/Nicobari-Chicken.pdf
- Vijh, R. K., T. C. Roy, P. K. Vij, M. S. Tantia, and S. P. S. Ahlawat. 2005. “Chicken Breeds of India.” Miri. Miri. Karnal, Haryana, India: Published by National Bureau of Animal genetic Resources (NBAGR). https://nbagr.icar.gov.in/wp-content/uploads/2020/02/Miri-Chicken.pdf
- Yadav, S. P., T. R. Kannaki, R. K. Mahapatra, C. Paswan, T. K. Bhattacharya, S. K. Sarkar, and R. N. Chatterjee. 2018. “In Vivo Cell-mediated Immune, Hemagglutination Inhibition Response, Hematological and Biochemical Values in Native Vs. Exotic Chicken Breeds.” Poultry Science 97 (9): 3063–3071. doi:https://doi.org/10.3382/ps/pey182.
- Zhou, H., N. Deeb, C. M. Evock-Clover, C. M. Ashwell, and S. J. Lamont. 2006. “Genome-wide Linkage Analysis to Identify Chromosomal Regions Affecting Phenotypic Traits in the Chicken. II. Body Composition.” Poultry Science 85 (10): 1712–1721. doi:https://doi.org/10.1093/ps/85.10.1712.